Wall clock time and date at job start Wed Apr 1 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 S 1.81400 * 109.47256 * 180.02562 * 7 5 4 9 9 C 1.81400 * 101.91926 * 179.97438 * 8 7 5 10 10 O 1.42105 * 108.57573 * 294.48302 * 8 7 5 11 11 O 1.42097 * 108.57982 * 65.50882 * 8 7 5 12 12 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 13 13 C 1.53933 * 113.73180 * 156.72553 * 12 2 1 14 14 N 1.47956 * 86.17748 * 221.91791 * 13 12 2 15 15 C 1.46898 * 111.00087 * 137.58506 * 14 13 12 16 16 C 1.50698 * 109.47401 * 90.63869 * 15 14 13 17 17 O 1.21295 * 119.99575 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00194 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00014 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00089 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99745 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00314 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46657 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47144 * 119.99724 * 23 21 19 26 26 H 1.48493 * 109.46815 * 239.99782 * 23 21 19 27 27 C 1.47954 * 90.76797 * 24.69196 * 14 13 12 28 28 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 29 29 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 31 31 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 32 32 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 33 33 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 34 34 H 1.08999 * 109.47161 * 60.00125 * 9 8 7 35 35 H 1.09002 * 109.46710 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47050 * 299.99596 * 9 8 7 37 37 H 1.09001 * 112.93115 * 288.43284 * 12 2 1 38 38 H 1.08999 * 113.75804 * 336.23805 * 13 12 2 39 39 H 1.09003 * 113.75753 * 107.60487 * 13 12 2 40 40 H 1.09004 * 109.47401 * 210.63849 * 15 14 13 41 41 H 1.09008 * 109.47233 * 330.63724 * 15 14 13 42 42 H 0.97007 * 120.00054 * 359.97438 * 18 16 15 43 43 H 0.97002 * 119.99854 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.76592 * 220.99493 * 27 14 13 45 45 H 1.08997 * 113.76130 * 89.62267 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 16 2.7104 0.4363 4.9762 9 6 3.3295 -0.6138 6.3196 10 8 3.6855 1.4300 4.6915 11 8 1.3833 0.8362 5.2896 12 6 2.0400 -0.7211 -1.2495 13 6 3.4669 -0.3152 -1.6600 14 7 2.9603 -0.3143 -3.0501 15 6 3.4680 0.8457 -3.7948 16 6 4.7623 0.4794 -4.4741 17 8 5.2169 -0.6383 -4.3505 18 7 5.4148 1.3937 -5.2189 19 6 6.5921 1.0602 -5.8374 20 1 6.9968 0.0650 -5.7273 21 6 7.2649 2.0030 -6.6048 22 7 6.7727 3.2141 -6.7383 23 14 8.8695 1.5489 -7.4469 24 1 9.2062 0.1353 -7.1409 25 1 8.7227 1.7167 -8.9151 26 1 9.9550 2.4339 -6.9536 27 6 1.5821 -0.0736 -2.5688 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.2491 -1.6319 1.1524 32 1 1.9779 -1.5512 3.8323 33 1 3.6494 -1.1208 3.3976 34 1 4.3089 -1.0088 6.0500 35 1 3.4148 -0.0236 7.2321 36 1 2.6372 -1.4395 6.4838 37 1 1.8822 -1.7990 -1.2118 38 1 3.7639 0.6699 -1.3002 39 1 4.2151 -1.0837 -1.4658 40 1 2.7359 1.1447 -4.5450 41 1 3.6406 1.6726 -3.1058 42 1 5.0510 2.2875 -5.3181 43 1 7.2427 3.8724 -7.2738 44 1 0.8243 -0.6490 -3.1006 45 1 1.3279 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276351617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:30 Heat of formation + Delta-G solvation = -97.756652 kcal Electronic energy + Delta-G solvation = -28083.566205 eV Core-core repulsion = 23844.258141 eV Total energy + Delta-G solvation = -4239.308064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.70455 -39.67890 -37.77926 -37.33945 -36.35440 -35.63726 -33.86697 -32.40565 -31.24160 -30.58410 -29.84778 -29.19278 -26.28772 -25.58565 -24.20933 -22.34171 -21.05117 -19.85626 -19.28856 -19.12822 -17.99319 -17.75938 -17.37147 -16.75489 -16.38788 -16.18274 -16.06220 -15.53681 -15.23989 -14.99322 -14.76125 -14.37724 -14.05788 -13.80665 -13.75634 -13.73684 -13.62879 -13.23493 -13.06380 -12.68624 -12.58717 -12.39198 -12.37082 -12.32206 -11.94685 -11.64841 -11.57709 -11.39401 -11.27584 -11.09659 -11.02141 -10.77133 -10.71620 -10.45780 -10.32862 -10.19748 -9.53386 -9.48818 -8.72328 -8.16102 -7.93632 -6.39273 -3.80030 -0.57867 2.04247 2.26123 2.51594 3.17714 3.27854 3.35023 3.37005 3.52804 3.86874 3.94553 4.00291 4.12613 4.22521 4.25269 4.30050 4.47544 4.54212 4.57956 4.91717 4.97380 5.09210 5.10788 5.15736 5.22293 5.34510 5.41213 5.46823 5.61006 5.68350 5.69379 5.75139 5.87592 5.96891 6.00426 6.22136 6.29342 6.57561 6.93461 7.16184 7.57454 7.64023 8.08752 8.64720 9.20937 9.57505 10.09764 10.78699 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.001961 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.427073 B =14276.887082 C =15359.188288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.094 0.906 4 N -0.710 5.710 5 C 0.542 3.458 6 O -0.527 6.527 7 C -0.663 4.663 8 S 2.455 3.545 9 C -0.663 4.663 10 O -0.918 6.918 11 O -0.922 6.922 12 C -0.126 4.126 13 C 0.016 3.984 14 N -0.449 5.449 15 C 0.009 3.991 16 C 0.447 3.553 17 O -0.577 6.577 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.010 3.990 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.405 0.595 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.695 -9.764 23.779 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.112 0.888 4 N -0.360 5.360 5 C 0.325 3.675 6 O -0.404 6.404 7 C -0.790 4.790 8 S 2.631 3.369 9 C -0.812 4.812 10 O -0.915 6.915 11 O -0.919 6.919 12 C -0.145 4.145 13 C -0.113 4.113 14 N -0.171 5.171 15 C -0.123 4.123 16 C 0.232 3.768 17 O -0.460 6.460 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.119 4.119 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.240 0.760 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.585 -9.185 23.312 28.039 hybrid contribution 0.896 -0.307 -0.171 0.962 sum -11.689 -9.492 23.141 27.608 Atomic orbital electron populations 1.22162 0.94548 1.02430 1.03034 1.21216 0.94538 0.97499 0.82599 0.88800 1.45910 1.66670 1.14245 1.09219 1.19112 0.77847 0.86705 0.83808 1.90887 1.49899 1.15075 1.84536 1.30918 1.12374 1.19855 1.15815 1.07212 0.75979 0.76653 0.77100 1.30399 1.13434 1.17315 1.20061 1.93623 1.62255 1.52383 1.83286 1.93600 1.36743 1.78921 1.82654 1.23337 0.97159 1.01173 0.92865 1.24013 0.96088 1.01670 0.89520 1.68374 1.01849 1.36128 1.10739 1.22491 0.98086 0.92693 0.99020 1.19682 0.86550 0.86363 0.84226 1.90512 1.68821 1.21470 1.65233 1.41892 1.21750 1.12979 1.43842 1.19735 0.98056 0.99399 1.25495 0.87939 1.25263 0.99878 0.95009 0.97929 1.69621 1.40144 1.03786 1.40847 0.85804 0.81102 0.78768 0.78679 1.19259 1.20767 1.20779 1.23964 0.94294 1.00022 0.93639 0.90970 0.92206 0.91896 0.76046 0.82263 0.82068 0.85128 0.84818 0.85246 0.87689 0.91257 0.89098 0.89374 0.92370 0.77539 0.91954 0.88999 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.29 37.16 0.35 -1.00 16 2 C 0.15 1.35 2.41 -67.93 -0.16 1.18 16 3 H 0.09 1.08 7.37 -51.93 -0.38 0.69 16 4 N -0.71 -5.49 5.08 -53.80 -0.27 -5.76 16 5 C 0.54 5.22 7.81 -10.98 -0.09 5.13 16 6 O -0.53 -7.59 15.29 2.55 0.04 -7.55 16 7 C -0.66 -2.90 6.29 36.01 0.23 -2.67 16 8 S 2.45 17.38 4.60 -107.50 -0.49 16.89 16 9 C -0.66 -1.32 10.62 101.05 1.07 -0.24 16 10 O -0.92 -11.04 17.95 -59.53 -1.07 -12.11 16 11 O -0.92 -10.39 17.95 -59.52 -1.07 -11.46 16 12 C -0.13 -1.23 3.49 -89.68 -0.31 -1.55 16 13 C 0.02 0.22 7.51 -2.77 -0.02 0.20 16 14 N -0.45 -7.21 5.65 -239.78 -1.35 -8.56 16 15 C 0.01 0.16 5.28 -4.98 -0.03 0.14 16 16 C 0.45 10.78 7.83 -10.99 -0.09 10.70 16 17 O -0.58 -16.02 16.01 5.54 0.09 -15.94 16 18 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.01 0.12 6.57 -2.77 -0.02 0.10 16 28 H 0.07 0.54 7.43 -51.93 -0.39 0.16 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 1.85 8.60 -40.82 -0.35 1.50 16 32 H 0.16 0.05 8.14 -51.92 -0.42 -0.38 16 33 H 0.16 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.13 0.01 8.14 -51.92 -0.42 -0.41 16 35 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.13 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.97 7.29 -51.93 -0.38 0.59 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 41 H 0.06 0.95 7.38 -51.92 -0.38 0.57 16 42 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -42.34 392.79 -8.65 -50.98 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.77 Total: 6.34 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.69 Total: 3.89 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.96 Total: -53.26 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -2.01 Total: -47.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 17.38 SS G_CDS: -0.49 Total: 16.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -42.34 -8.65 -50.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276351617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.772 kcal (2) G-P(sol) polarization free energy of solvation -42.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds