Wall clock time and date at job start Wed Apr 1 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 S 1.81400 * 109.47256 * 180.02562 * 7 5 4 9 9 C 1.81400 * 101.91926 * 179.97438 * 8 7 5 10 10 O 1.42105 * 108.57573 * 294.48302 * 8 7 5 11 11 O 1.42097 * 108.57982 * 65.50882 * 8 7 5 12 12 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 13 13 C 1.53933 * 113.73180 * 156.72553 * 12 2 1 14 14 N 1.47956 * 86.17748 * 221.91791 * 13 12 2 15 15 C 1.46898 * 111.00087 * 137.58506 * 14 13 12 16 16 C 1.50698 * 109.47401 * 90.63869 * 15 14 13 17 17 O 1.21295 * 119.99575 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00194 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00014 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00089 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99745 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00314 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46657 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47144 * 119.99724 * 23 21 19 26 26 H 1.48493 * 109.46815 * 239.99782 * 23 21 19 27 27 C 1.47954 * 90.76797 * 24.69196 * 14 13 12 28 28 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 29 29 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 31 31 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 32 32 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 33 33 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 34 34 H 1.08999 * 109.47161 * 60.00125 * 9 8 7 35 35 H 1.09002 * 109.46710 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.47050 * 299.99596 * 9 8 7 37 37 H 1.09001 * 112.93115 * 288.43284 * 12 2 1 38 38 H 1.08999 * 113.75804 * 336.23805 * 13 12 2 39 39 H 1.09003 * 113.75753 * 107.60487 * 13 12 2 40 40 H 1.09004 * 109.47401 * 210.63849 * 15 14 13 41 41 H 1.09008 * 109.47233 * 330.63724 * 15 14 13 42 42 H 0.97007 * 120.00054 * 359.97438 * 18 16 15 43 43 H 0.97002 * 119.99854 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.76592 * 220.99493 * 27 14 13 45 45 H 1.08997 * 113.76130 * 89.62267 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 16 2.7104 0.4363 4.9762 9 6 3.3295 -0.6138 6.3196 10 8 3.6855 1.4300 4.6915 11 8 1.3833 0.8362 5.2896 12 6 2.0400 -0.7211 -1.2495 13 6 3.4669 -0.3152 -1.6600 14 7 2.9603 -0.3143 -3.0501 15 6 3.4680 0.8457 -3.7948 16 6 4.7623 0.4794 -4.4741 17 8 5.2169 -0.6383 -4.3505 18 7 5.4148 1.3937 -5.2189 19 6 6.5921 1.0602 -5.8374 20 1 6.9968 0.0650 -5.7273 21 6 7.2649 2.0030 -6.6048 22 7 6.7727 3.2141 -6.7383 23 14 8.8695 1.5489 -7.4469 24 1 9.2062 0.1353 -7.1409 25 1 8.7227 1.7167 -8.9151 26 1 9.9550 2.4339 -6.9536 27 6 1.5821 -0.0736 -2.5688 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.2491 -1.6319 1.1524 32 1 1.9779 -1.5512 3.8323 33 1 3.6494 -1.1208 3.3976 34 1 4.3089 -1.0088 6.0500 35 1 3.4148 -0.0236 7.2321 36 1 2.6372 -1.4395 6.4838 37 1 1.8822 -1.7990 -1.2118 38 1 3.7639 0.6699 -1.3002 39 1 4.2151 -1.0837 -1.4658 40 1 2.7359 1.1447 -4.5450 41 1 3.6406 1.6726 -3.1058 42 1 5.0510 2.2875 -5.3181 43 1 7.2427 3.8724 -7.2738 44 1 0.8243 -0.6490 -3.1006 45 1 1.3279 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276351617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:29 Heat of formation + Delta-G solvation = -137.430835 kcal Electronic energy + Delta-G solvation = -28085.286607 eV Core-core repulsion = 23844.258141 eV Total energy + Delta-G solvation = -4241.028466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63785 -40.68346 -39.59113 -37.98999 -37.00437 -36.52627 -35.91232 -33.37638 -33.09255 -31.36278 -30.45849 -29.84043 -27.59429 -26.91675 -25.63904 -23.37634 -21.82148 -21.01303 -20.75349 -19.92761 -19.75234 -18.57470 -18.07462 -17.80741 -17.28028 -17.05106 -16.87939 -16.59905 -16.48695 -16.28313 -16.06316 -15.74531 -15.39968 -14.95503 -14.78379 -14.32824 -14.05627 -13.95112 -13.88381 -13.76215 -13.69763 -13.53672 -13.29832 -13.06294 -13.00432 -13.00248 -12.79014 -12.68415 -12.42646 -12.13921 -12.12258 -11.88107 -11.85436 -11.68172 -11.65580 -11.51765 -11.26065 -10.40252 -10.27461 -10.02767 -9.63947 -8.48037 -5.97154 -1.02507 1.35390 1.36935 1.40008 1.54707 1.84359 1.92896 2.03909 2.27377 2.76436 2.90751 3.11742 3.17827 3.27582 3.42959 3.54326 3.63870 3.98605 4.09781 4.13594 4.15493 4.21700 4.28721 4.32828 4.35123 4.41113 4.44827 4.48966 4.51699 4.75033 4.78250 4.82825 4.96443 5.00754 5.16284 5.28818 5.38849 5.41558 5.45124 5.88374 6.06988 6.31438 6.58862 7.04161 7.11420 7.54820 8.10816 8.69729 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.001961 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.427073 B =14276.887082 C =15359.188288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.066 0.934 4 N -0.698 5.698 5 C 0.525 3.475 6 O -0.586 6.586 7 C -0.644 4.644 8 S 2.430 3.570 9 C -0.628 4.628 10 O -0.989 6.989 11 O -0.983 6.983 12 C -0.095 4.095 13 C 0.007 3.993 14 N -0.481 5.481 15 C 0.022 3.978 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.578 5.578 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.014 3.986 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.423 0.577 32 H 0.210 0.790 33 H 0.202 0.798 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.110 0.890 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 -12.330 24.685 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.084 0.916 4 N -0.350 5.350 5 C 0.311 3.689 6 O -0.467 6.467 7 C -0.773 4.773 8 S 2.615 3.385 9 C -0.781 4.781 10 O -0.986 6.986 11 O -0.980 6.980 12 C -0.114 4.114 13 C -0.122 4.122 14 N -0.203 5.203 15 C -0.110 4.110 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.215 5.215 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.114 4.114 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.227 0.773 33 H 0.219 0.781 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.183 0.817 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.129 0.871 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.990 -11.719 24.206 29.866 hybrid contribution 1.011 0.377 -0.414 1.156 sum -11.979 -11.342 23.792 28.951 Atomic orbital electron populations 1.22108 0.93309 1.03622 1.02529 1.21046 0.95374 0.96233 0.83031 0.91597 1.45815 1.65816 1.15005 1.08331 1.19994 0.77106 0.86359 0.85484 1.90873 1.52373 1.17858 1.85599 1.30777 1.15725 1.19417 1.11410 1.07290 0.74289 0.77912 0.78960 1.30101 1.15421 1.16466 1.16145 1.93541 1.63100 1.57032 1.84954 1.93525 1.39250 1.81387 1.83863 1.23139 0.93646 1.02228 0.92423 1.24035 0.98193 1.00988 0.88986 1.68342 1.04680 1.35531 1.11759 1.22362 0.95017 0.93980 0.99618 1.20796 0.87887 0.85359 0.83012 1.90471 1.70355 1.23150 1.66362 1.41990 1.21605 1.13495 1.44435 1.19692 0.99839 0.98999 1.27639 0.90367 1.26085 1.02852 0.94745 0.97861 1.69685 1.41311 1.04346 1.40969 0.84847 0.77086 0.78254 0.77990 1.19709 1.19494 1.19606 1.24094 0.92084 1.01296 0.93945 0.90228 0.90070 0.93739 0.73855 0.77277 0.78056 0.82123 0.84348 0.81654 0.85468 0.92124 0.90544 0.87385 0.90917 0.77128 0.91314 0.87137 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.29 71.98 0.67 -1.65 16 2 C 0.15 2.57 2.41 45.00 0.11 2.68 16 3 H 0.07 1.55 7.37 -2.39 -0.02 1.54 16 4 N -0.70 -9.52 5.08 -442.52 -2.25 -11.77 16 5 C 0.52 9.73 7.81 87.66 0.68 10.42 16 6 O -0.59 -17.88 15.29 -0.15 0.00 -17.89 16 7 C -0.64 -3.84 6.29 71.24 0.45 -3.39 16 8 S 2.43 33.76 4.60 -56.49 -0.26 33.50 16 9 C -0.63 -0.08 10.62 113.37 1.20 1.13 16 10 O -0.99 -25.63 17.95 -125.74 -2.26 -27.88 16 11 O -0.98 -23.48 17.95 -125.75 -2.26 -25.73 16 12 C -0.10 -1.67 3.49 -10.14 -0.04 -1.70 16 13 C 0.01 0.19 7.51 86.41 0.65 0.84 16 14 N -0.48 -14.99 5.65 -912.53 -5.15 -20.14 16 15 C 0.02 0.78 5.28 85.56 0.45 1.23 16 16 C 0.44 21.81 7.83 87.66 0.69 22.50 16 17 O -0.62 -35.30 16.01 -3.08 -0.05 -35.35 16 18 N -0.58 -30.65 5.29 -306.99 -1.62 -32.27 16 19 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.92 -50.91 13.05 21.66 0.28 -50.63 16 23 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.01 0.29 6.57 86.41 0.57 0.86 16 28 H 0.08 1.04 7.43 -2.39 -0.02 1.03 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.42 2.45 8.60 -92.71 -0.80 1.66 16 32 H 0.21 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.20 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.16 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.14 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.17 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.73 7.29 -2.39 -0.02 1.72 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.11 3.37 8.08 -2.38 -0.02 3.35 16 41 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 42 H 0.40 19.97 7.90 -92.70 -0.73 19.23 16 43 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.51 7.85 -2.39 -0.02 1.50 16 Total: -1.00 -100.84 392.79 -5.33 -106.17 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.50 Total: 22.28 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.71 Total: 13.97 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -8.74 Total: -114.82 kcal Atomic # 8 Polarization: -102.29 SS G_CDS: -4.56 Total: -106.85 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 33.76 SS G_CDS: -0.26 Total: 33.50 kcal Total: -100.84 -5.33 -106.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276351617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.265 kcal (2) G-P(sol) polarization free energy of solvation -100.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds