Wall clock time and date at job start Wed Apr 1 2020 06:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 N 1.46497 * 109.47346 * 239.99484 * 2 1 3 5 5 C 1.34779 * 119.99814 * 85.00462 * 4 2 1 6 6 O 1.21277 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99947 * 180.02562 * 5 4 2 8 8 S 1.81401 * 109.46988 * 179.97438 * 7 5 4 9 9 C 1.81396 * 101.92078 * 179.97438 * 8 7 5 10 10 O 1.42100 * 108.57868 * 294.48497 * 8 7 5 11 11 O 1.42104 * 108.57836 * 65.51207 * 8 7 5 12 12 C 1.53000 * 109.46551 * 119.99697 * 2 1 3 13 13 C 1.53936 * 113.73551 * 281.72763 * 12 2 1 14 14 N 1.47964 * 86.18197 * 221.92392 * 13 12 2 15 15 C 1.46896 * 110.99673 * 137.58280 * 14 13 12 16 16 C 1.50704 * 109.47130 * 90.64197 * 15 14 13 17 17 O 1.21298 * 119.99829 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99890 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99888 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99685 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00176 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47212 * 89.99912 * 23 21 19 25 25 H 1.48503 * 109.46748 * 210.00073 * 23 21 19 26 26 H 1.48497 * 109.47262 * 329.99586 * 23 21 19 27 27 C 1.47960 * 90.76026 * 24.68966 * 14 13 12 28 28 H 1.08992 * 109.47477 * 300.05459 * 1 2 3 29 29 H 1.09001 * 109.46779 * 60.05173 * 1 2 3 30 30 H 1.09007 * 109.47194 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00174 * 265.00412 * 4 2 1 32 32 H 1.09002 * 109.46965 * 299.99524 * 7 5 4 33 33 H 1.08999 * 109.47385 * 59.99500 * 7 5 4 34 34 H 1.08999 * 109.47161 * 60.00171 * 9 8 7 35 35 H 1.09000 * 109.47106 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.47256 * 300.00129 * 9 8 7 37 37 H 1.09003 * 112.94304 * 53.44233 * 12 2 1 38 38 H 1.08999 * 113.76013 * 336.24225 * 13 12 2 39 39 H 1.09003 * 113.75580 * 107.60586 * 13 12 2 40 40 H 1.08997 * 109.47205 * 210.63788 * 15 14 13 41 41 H 1.08998 * 109.47782 * 330.64145 * 15 14 13 42 42 H 0.97000 * 120.00248 * 0.02562 * 18 16 15 43 43 H 0.96999 * 120.00080 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.75898 * 220.98755 * 27 14 13 45 45 H 1.09003 * 113.86036 * 89.64385 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6490 -0.7290 -3.5876 8 16 2.7096 0.4364 -4.9764 9 6 3.3288 -0.6135 -6.3199 10 8 1.3827 0.8373 -5.2893 11 8 3.6855 1.4294 -4.6920 12 6 2.0398 -0.7212 1.2493 13 6 1.9763 0.1339 2.5277 14 7 3.3108 -0.4202 2.8461 15 6 4.2037 0.6237 3.3664 16 6 4.0861 0.6829 4.8677 17 8 3.3322 -0.0703 5.4471 18 7 4.8187 1.5725 5.5665 19 6 4.7113 1.6267 6.9322 20 1 4.0394 0.9567 7.4481 21 6 5.4661 2.5443 7.6526 22 7 5.3629 2.5965 8.9616 23 14 6.6266 3.7046 6.7602 24 1 5.9035 4.9523 6.4059 25 1 7.7751 4.0316 7.6429 26 1 7.1239 3.0522 5.5223 27 6 3.5699 -0.6729 1.4115 28 1 -0.3634 0.5146 0.8894 29 1 -0.3633 0.5130 -0.8905 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 3.6482 -1.1215 -3.3984 33 1 1.9762 -1.5508 -3.8325 34 1 2.6364 -1.4391 -6.4843 35 1 3.4134 -0.0235 -7.2325 36 1 4.3082 -1.0088 -6.0502 37 1 1.6177 -1.7194 1.3657 38 1 1.9802 1.2074 2.3387 39 1 1.1956 -0.1738 3.2235 40 1 5.2326 0.3919 3.0915 41 1 3.9224 1.5874 2.9418 42 1 5.4213 2.1751 5.1031 43 1 5.8900 3.2368 9.4645 44 1 4.0626 -1.6253 1.2153 45 1 4.0401 0.1635 0.8943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276351618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:36 Heat of formation + Delta-G solvation = -90.753164 kcal Electronic energy + Delta-G solvation = -28125.509003 eV Core-core repulsion = 23886.504633 eV Total energy + Delta-G solvation = -4239.004370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -40.79246 -39.75074 -37.96899 -37.41064 -36.42464 -35.70572 -33.91762 -32.48197 -31.65467 -30.68344 -29.95847 -29.32909 -26.16664 -25.90802 -24.09360 -22.27833 -21.09614 -19.96378 -19.39010 -19.25988 -18.39568 -17.93281 -17.40633 -16.82752 -16.45293 -16.22874 -16.02130 -15.65190 -15.47533 -15.15793 -14.80348 -14.51538 -14.08712 -13.90309 -13.83502 -13.77407 -13.41095 -13.32132 -13.00566 -12.74369 -12.68877 -12.48498 -12.46054 -12.39325 -12.21431 -12.07615 -11.66783 -11.46547 -11.34588 -11.19064 -11.08784 -10.99626 -10.70483 -10.58061 -10.53795 -9.95709 -9.60267 -9.54197 -8.83897 -8.29432 -8.15434 -6.29067 -3.80347 -0.65086 1.96808 2.19000 2.43704 3.04245 3.08529 3.16571 3.29857 3.45484 3.75049 3.80002 3.92636 4.05225 4.12054 4.18627 4.24463 4.40231 4.47260 4.49433 4.71661 4.87262 5.01719 5.02784 5.10226 5.18027 5.30372 5.31987 5.40776 5.53702 5.54360 5.58502 5.63244 5.81424 5.92876 5.95025 5.99951 6.14516 6.45238 6.86616 7.03324 7.56888 7.60277 8.16351 8.62709 8.97628 9.44821 9.86553 10.84161 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001950 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.027019 B =14353.217209 C =15250.885670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.093 0.907 4 N -0.710 5.710 5 C 0.541 3.459 6 O -0.527 6.527 7 C -0.663 4.663 8 S 2.454 3.546 9 C -0.663 4.663 10 O -0.921 6.921 11 O -0.920 6.920 12 C -0.127 4.127 13 C 0.023 3.977 14 N -0.448 5.448 15 C 0.006 3.994 16 C 0.455 3.545 17 O -0.557 6.557 18 N -0.594 5.594 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.405 0.595 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.088 0.912 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -10.211 -32.420 34.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.112 0.888 4 N -0.361 5.361 5 C 0.325 3.675 6 O -0.403 6.403 7 C -0.790 4.790 8 S 2.630 3.370 9 C -0.812 4.812 10 O -0.918 6.918 11 O -0.917 6.917 12 C -0.146 4.146 13 C -0.107 4.107 14 N -0.170 5.170 15 C -0.126 4.126 16 C 0.241 3.759 17 O -0.438 6.438 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.126 4.126 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.808 -9.429 -31.327 33.067 hybrid contribution 1.525 0.194 -0.996 1.832 sum -3.282 -9.235 -32.323 33.776 Atomic orbital electron populations 1.22162 0.94414 1.02495 1.03160 1.21208 0.94757 0.97358 0.82477 0.88849 1.45904 1.66670 1.14238 1.09242 1.19117 0.77909 0.86720 0.83789 1.90893 1.49828 1.15115 1.84496 1.30919 1.12309 1.19893 1.15830 1.07219 0.75987 0.76647 0.77109 1.30401 1.13404 1.17337 1.20068 1.93607 1.36712 1.78854 1.82630 1.93616 1.62246 1.52462 1.83335 1.23361 0.96466 1.01125 0.93660 1.23949 0.94585 0.97492 0.94655 1.68385 1.01852 1.33374 1.13365 1.22529 0.98912 0.94743 0.96401 1.19577 0.84722 0.83940 0.87708 1.90561 1.40033 1.42617 1.70617 1.42232 1.39477 1.33783 1.07905 1.19420 1.24624 1.19559 0.79623 0.86322 1.25034 0.97953 0.97791 0.95458 1.69622 1.41024 1.36421 1.05194 0.86672 0.81371 0.81684 0.79656 1.19644 1.20182 1.19542 1.24007 0.95546 1.02239 0.90831 0.90811 0.91894 0.92173 0.76086 0.82145 0.82224 0.85215 0.84798 0.85157 0.87484 0.91045 0.88489 0.89336 0.92237 0.79785 0.91653 0.89334 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.44 37.16 0.35 -1.02 16 2 C 0.15 1.27 2.29 -67.93 -0.16 1.11 16 3 H 0.09 1.00 7.48 -51.93 -0.39 0.62 16 4 N -0.71 -4.75 4.94 -53.81 -0.27 -5.02 16 5 C 0.54 4.67 7.81 -10.98 -0.09 4.58 16 6 O -0.53 -7.14 15.29 2.56 0.04 -7.10 16 7 C -0.66 -2.22 6.29 36.01 0.23 -1.99 16 8 S 2.45 15.28 4.60 -107.50 -0.49 14.78 16 9 C -0.66 -0.78 10.62 101.05 1.07 0.29 16 10 O -0.92 -9.82 17.95 -59.53 -1.07 -10.89 16 11 O -0.92 -10.10 17.95 -59.52 -1.07 -11.17 16 12 C -0.13 -1.16 3.35 -89.69 -0.30 -1.46 16 13 C 0.02 0.29 7.41 -2.76 -0.02 0.27 16 14 N -0.45 -6.80 5.65 -239.71 -1.35 -8.16 16 15 C 0.01 0.11 5.28 -4.98 -0.03 0.08 16 16 C 0.46 10.51 7.83 -10.99 -0.09 10.42 16 17 O -0.56 -15.23 16.01 5.54 0.09 -15.14 16 18 N -0.59 -14.38 5.09 -10.96 -0.06 -14.44 16 19 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 20 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -26.03 13.96 55.50 0.77 -25.26 16 23 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 27 C 0.00 0.03 7.38 -2.77 -0.02 0.01 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.40 1.39 8.60 -40.82 -0.35 1.04 16 32 H 0.16 -0.04 8.14 -51.92 -0.42 -0.46 16 33 H 0.16 -0.09 8.14 -51.92 -0.42 -0.51 16 34 H 0.13 -0.13 8.14 -51.92 -0.42 -0.56 16 35 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 36 H 0.13 -0.11 8.14 -51.92 -0.42 -0.53 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.89 7.36 -51.93 -0.38 0.50 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 42 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -43.38 391.02 -8.29 -51.67 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.77 Total: 5.40 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 0.71 Total: 4.47 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.90 Total: -52.87 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -2.01 Total: -44.30 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Atomic # 16 Polarization: 15.28 SS G_CDS: -0.49 Total: 14.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -43.38 -8.29 -51.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276351618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.080 kcal (2) G-P(sol) polarization free energy of solvation -43.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds