Wall clock time and date at job start Wed Apr 1 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 N 1.46497 * 109.47346 * 239.99484 * 2 1 3 5 5 C 1.34779 * 119.99814 * 85.00462 * 4 2 1 6 6 O 1.21277 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99947 * 180.02562 * 5 4 2 8 8 S 1.81401 * 109.46988 * 179.97438 * 7 5 4 9 9 C 1.81396 * 101.92078 * 179.97438 * 8 7 5 10 10 O 1.42100 * 108.57868 * 294.48497 * 8 7 5 11 11 O 1.42104 * 108.57836 * 65.51207 * 8 7 5 12 12 C 1.53000 * 109.46551 * 119.99697 * 2 1 3 13 13 C 1.53936 * 113.73551 * 281.72763 * 12 2 1 14 14 N 1.47964 * 86.18197 * 221.92392 * 13 12 2 15 15 C 1.46896 * 110.99673 * 137.58280 * 14 13 12 16 16 C 1.50704 * 109.47130 * 90.64197 * 15 14 13 17 17 O 1.21298 * 119.99829 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99890 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99888 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99685 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00176 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47212 * 89.99912 * 23 21 19 25 25 H 1.48503 * 109.46748 * 210.00073 * 23 21 19 26 26 H 1.48497 * 109.47262 * 329.99586 * 23 21 19 27 27 C 1.47960 * 90.76026 * 24.68966 * 14 13 12 28 28 H 1.08992 * 109.47477 * 300.05459 * 1 2 3 29 29 H 1.09001 * 109.46779 * 60.05173 * 1 2 3 30 30 H 1.09007 * 109.47194 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00174 * 265.00412 * 4 2 1 32 32 H 1.09002 * 109.46965 * 299.99524 * 7 5 4 33 33 H 1.08999 * 109.47385 * 59.99500 * 7 5 4 34 34 H 1.08999 * 109.47161 * 60.00171 * 9 8 7 35 35 H 1.09000 * 109.47106 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.47256 * 300.00129 * 9 8 7 37 37 H 1.09003 * 112.94304 * 53.44233 * 12 2 1 38 38 H 1.08999 * 113.76013 * 336.24225 * 13 12 2 39 39 H 1.09003 * 113.75580 * 107.60586 * 13 12 2 40 40 H 1.08997 * 109.47205 * 210.63788 * 15 14 13 41 41 H 1.08998 * 109.47782 * 330.64145 * 15 14 13 42 42 H 0.97000 * 120.00248 * 0.02562 * 18 16 15 43 43 H 0.96999 * 120.00080 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.75898 * 220.98755 * 27 14 13 45 45 H 1.09003 * 113.86036 * 89.64385 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6490 -0.7290 -3.5876 8 16 2.7096 0.4364 -4.9764 9 6 3.3288 -0.6135 -6.3199 10 8 1.3827 0.8373 -5.2893 11 8 3.6855 1.4294 -4.6920 12 6 2.0398 -0.7212 1.2493 13 6 1.9763 0.1339 2.5277 14 7 3.3108 -0.4202 2.8461 15 6 4.2037 0.6237 3.3664 16 6 4.0861 0.6829 4.8677 17 8 3.3322 -0.0703 5.4471 18 7 4.8187 1.5725 5.5665 19 6 4.7113 1.6267 6.9322 20 1 4.0394 0.9567 7.4481 21 6 5.4661 2.5443 7.6526 22 7 5.3629 2.5965 8.9616 23 14 6.6266 3.7046 6.7602 24 1 5.9035 4.9523 6.4059 25 1 7.7751 4.0316 7.6429 26 1 7.1239 3.0522 5.5223 27 6 3.5699 -0.6729 1.4115 28 1 -0.3634 0.5146 0.8894 29 1 -0.3633 0.5130 -0.8905 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 3.6482 -1.1215 -3.3984 33 1 1.9762 -1.5508 -3.8325 34 1 2.6364 -1.4391 -6.4843 35 1 3.4134 -0.0235 -7.2325 36 1 4.3082 -1.0088 -6.0502 37 1 1.6177 -1.7194 1.3657 38 1 1.9802 1.2074 2.3387 39 1 1.1956 -0.1738 3.2235 40 1 5.2326 0.3919 3.0915 41 1 3.9224 1.5874 2.9418 42 1 5.4213 2.1751 5.1031 43 1 5.8900 3.2368 9.4645 44 1 4.0626 -1.6253 1.2153 45 1 4.0401 0.1635 0.8943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276351618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:37:35 Heat of formation + Delta-G solvation = -132.536262 kcal Electronic energy + Delta-G solvation = -28127.320854 eV Core-core repulsion = 23886.504633 eV Total energy + Delta-G solvation = -4240.816221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.65371 -40.69280 -39.69624 -37.96905 -36.98268 -36.52261 -35.94871 -33.77942 -33.15240 -31.40651 -30.50594 -29.84597 -27.51272 -27.03024 -25.54351 -23.23244 -21.79028 -21.25679 -20.79891 -20.26442 -19.74257 -18.57128 -18.04554 -17.77431 -17.25914 -16.97358 -16.92993 -16.75713 -16.60726 -16.17596 -16.10790 -15.64024 -15.19599 -14.94577 -14.78573 -14.45763 -14.22299 -14.00909 -13.93953 -13.86209 -13.76601 -13.67838 -13.33843 -13.06774 -13.04186 -12.98228 -12.95186 -12.48996 -12.43024 -12.13238 -12.02191 -11.94127 -11.86996 -11.63870 -11.62929 -11.51898 -11.25359 -10.47093 -10.27183 -10.25731 -9.65143 -8.42712 -6.03354 -1.00465 1.28286 1.33684 1.39559 1.42327 1.85860 1.93148 1.95040 2.21099 2.61633 2.92472 3.12807 3.13970 3.19340 3.35759 3.55062 3.67614 4.00557 4.04366 4.12022 4.15420 4.17460 4.27018 4.34809 4.36118 4.37866 4.42007 4.47482 4.48660 4.73827 4.77394 4.82955 4.94840 5.02953 5.17349 5.28686 5.39643 5.42477 5.52270 5.89719 6.01508 6.34491 6.58558 6.87250 7.07365 7.38737 7.96482 8.75011 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001950 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.027019 B =14353.217209 C =15250.885670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.070 0.930 4 N -0.694 5.694 5 C 0.526 3.474 6 O -0.587 6.587 7 C -0.642 4.642 8 S 2.429 3.571 9 C -0.629 4.629 10 O -0.986 6.986 11 O -0.987 6.987 12 C -0.098 4.098 13 C 0.010 3.990 14 N -0.484 5.484 15 C 0.019 3.981 16 C 0.452 3.548 17 O -0.608 6.608 18 N -0.595 5.595 19 C -0.328 4.328 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.232 1.232 27 C 0.012 3.988 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.425 0.575 32 H 0.208 0.792 33 H 0.208 0.792 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.388 0.612 43 H 0.279 0.721 44 H 0.111 0.889 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -12.157 -36.396 38.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.088 0.912 4 N -0.346 5.346 5 C 0.312 3.688 6 O -0.468 6.468 7 C -0.771 4.771 8 S 2.615 3.385 9 C -0.782 4.782 10 O -0.984 6.984 11 O -0.984 6.984 12 C -0.117 4.117 13 C -0.119 4.119 14 N -0.206 5.206 15 C -0.113 4.113 16 C 0.240 3.760 17 O -0.492 6.492 18 N -0.237 5.237 19 C -0.457 4.457 20 H 0.073 0.927 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.156 1.156 27 C -0.116 4.116 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.182 0.818 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.552 -11.378 -35.323 37.198 hybrid contribution 0.725 0.603 0.289 0.986 sum -1.826 -10.776 -35.034 36.699 Atomic orbital electron populations 1.22127 0.94343 1.03377 1.02116 1.20955 0.94767 0.96435 0.83191 0.91183 1.45726 1.65768 1.15023 1.08101 1.19993 0.77090 0.86326 0.85406 1.90886 1.52311 1.18019 1.85542 1.30759 1.15962 1.19234 1.11165 1.07305 0.74241 0.77967 0.79026 1.30109 1.15480 1.16439 1.16194 1.93530 1.39450 1.81429 1.83949 1.93537 1.62955 1.56989 1.84951 1.23139 0.95974 1.00889 0.91748 1.23992 0.93344 0.98265 0.96299 1.68344 1.02426 1.33200 1.16670 1.22456 1.01132 0.96875 0.90837 1.20909 0.82575 0.81942 0.90576 1.90533 1.41768 1.44296 1.72580 1.42083 1.40517 1.34851 1.06241 1.18994 1.24960 1.19786 0.81946 0.92718 1.26109 0.99653 0.99420 0.96262 1.69802 1.42407 1.37689 1.07571 0.85370 0.78081 0.78674 0.79427 1.18333 1.19808 1.15574 1.24105 0.96309 1.03641 0.87515 0.91303 0.93568 0.90271 0.73688 0.77523 0.77473 0.81820 0.84517 0.81908 0.85825 0.90947 0.90696 0.86522 0.89792 0.77627 0.91141 0.87062 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.44 71.98 0.68 -1.89 16 2 C 0.15 2.39 2.29 44.99 0.10 2.49 16 3 H 0.07 1.48 7.48 -2.39 -0.02 1.47 16 4 N -0.69 -7.16 4.94 -442.54 -2.19 -9.35 16 5 C 0.53 8.03 7.81 87.66 0.68 8.72 16 6 O -0.59 -16.31 15.29 -0.16 0.00 -16.31 16 7 C -0.64 -1.70 6.29 71.24 0.45 -1.25 16 8 S 2.43 27.51 4.60 -56.49 -0.26 27.25 16 9 C -0.63 1.36 10.62 113.37 1.20 2.56 16 10 O -0.99 -21.93 17.95 -125.75 -2.26 -24.19 16 11 O -0.99 -22.40 17.95 -125.76 -2.26 -24.66 16 12 C -0.10 -1.56 3.35 -10.15 -0.03 -1.60 16 13 C 0.01 0.26 7.41 86.41 0.64 0.90 16 14 N -0.48 -13.87 5.65 -912.31 -5.15 -19.02 16 15 C 0.02 0.59 5.28 85.56 0.45 1.04 16 16 C 0.45 21.05 7.83 87.66 0.69 21.74 16 17 O -0.61 -34.69 16.01 -3.09 -0.05 -34.74 16 18 N -0.59 -28.86 5.09 -306.97 -1.56 -30.42 16 19 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 20 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 23 Si 0.96 39.73 27.74 68.60 1.90 41.64 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 27 C 0.01 0.21 7.38 86.41 0.64 0.85 16 28 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.42 0.86 8.60 -92.71 -0.80 0.06 16 32 H 0.21 -1.40 8.14 -2.39 -0.02 -1.42 16 33 H 0.21 -1.47 8.14 -2.39 -0.02 -1.49 16 34 H 0.16 -1.34 8.14 -2.39 -0.02 -1.36 16 35 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.16 -1.28 8.14 -2.39 -0.02 -1.30 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.78 7.36 -2.39 -0.02 1.77 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.12 3.01 8.08 -2.39 -0.02 3.00 16 41 H 0.08 2.24 7.38 -2.39 -0.02 2.22 16 42 H 0.39 15.69 5.76 -92.71 -0.53 15.15 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 Total: -1.00 -108.52 391.02 -5.07 -113.59 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.37 Total: 18.66 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.82 Total: 14.37 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -8.60 Total: -115.61 kcal Atomic # 8 Polarization: -95.33 SS G_CDS: -4.57 Total: -99.89 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.64 kcal Atomic # 16 Polarization: 27.51 SS G_CDS: -0.26 Total: 27.25 kcal Total: -108.52 -5.07 -113.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276351618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.949 kcal (2) G-P(sol) polarization free energy of solvation -108.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds