Wall clock time and date at job start Wed Apr 1 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47466 * 2 1 4 4 O 1.21254 * 119.99604 * 0.02562 * 3 2 1 5 5 C 1.47176 * 120.00007 * 180.02562 * 3 2 1 6 6 C 1.39904 * 120.13780 * 359.72199 * 5 3 2 7 7 C 1.37919 * 119.98035 * 179.72825 * 6 5 3 8 8 C 1.38287 * 120.25390 * 0.57117 * 7 6 5 9 9 C 1.39045 * 120.27184 * 359.70805 * 8 7 6 10 10 N 1.39770 * 119.98695 * 180.02562 * 9 8 7 11 11 C 1.34770 * 119.99698 * 213.38353 * 10 9 8 12 12 O 1.21372 * 120.00362 * 5.27500 * 11 10 9 13 13 C 1.49357 * 119.99967 * 185.28179 * 11 10 9 14 14 O 1.21357 * 120.00100 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00149 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99852 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47044 * 179.97438 * 16 15 13 18 18 O 1.21297 * 120.00046 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00422 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00652 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00458 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99923 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00143 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46886 * 60.00376 * 24 22 20 26 26 H 1.48501 * 109.46758 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47173 * 299.99786 * 24 22 20 28 28 C 1.38625 * 120.02308 * 359.97438 * 9 8 7 29 29 H 1.09007 * 109.46297 * 299.99844 * 1 2 3 30 30 H 1.08993 * 109.47029 * 59.99460 * 1 2 3 31 31 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47440 * 120.00440 * 2 1 3 33 33 H 1.09007 * 109.46815 * 240.00060 * 2 1 3 34 34 H 1.07996 * 120.00781 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.87332 * 180.29922 * 7 6 5 36 36 H 1.07999 * 119.86290 * 179.72317 * 8 7 6 37 37 H 0.97000 * 119.99877 * 33.38591 * 10 9 8 38 38 H 0.97000 * 120.00135 * 359.97438 * 15 13 11 39 39 H 1.09001 * 109.47198 * 299.99736 * 16 15 13 40 40 H 1.08994 * 109.47320 * 59.99889 * 16 15 13 41 41 H 0.97005 * 119.99981 * 0.02562 * 19 17 16 42 42 H 0.97000 * 120.00059 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.12913 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2445 2.3424 0.0005 5 6 3.4794 1.6897 -0.0006 6 6 4.3911 0.6284 0.0048 7 6 5.7464 0.8841 -0.0015 8 6 6.2096 2.1870 -0.0011 9 6 5.3130 3.2497 -0.0005 10 7 5.7878 4.5643 -0.0006 11 6 5.1003 5.5291 0.6421 12 8 4.1221 5.2413 1.3004 13 6 5.5422 6.9524 0.5441 14 8 6.5205 7.2402 -0.1139 15 7 4.8550 7.9172 1.1872 16 6 5.2888 9.3132 1.0915 17 6 4.3579 10.1846 1.8946 18 8 3.4242 9.6883 2.4888 19 7 4.5633 11.5153 1.9534 20 6 3.7167 12.3080 2.6844 21 1 2.8848 11.8662 3.2129 22 6 3.9282 13.6800 2.7446 23 7 4.9401 14.2177 2.1012 24 14 2.7742 14.7602 3.7401 25 1 2.7974 14.3310 5.1615 26 1 3.2136 16.1754 3.6426 27 1 1.3941 14.6331 3.2070 28 6 3.9483 3.0059 -0.0009 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 4.0336 -0.3907 0.0089 35 1 6.4485 0.0635 -0.0022 36 1 7.2722 2.3799 -0.0014 37 1 6.6120 4.7823 -0.4633 38 1 4.0733 7.6872 1.7134 39 1 6.3020 9.4065 1.4824 40 1 5.2714 9.6284 0.0483 41 1 5.3102 11.9122 1.4785 42 1 5.0875 15.1755 2.1429 43 1 3.2504 3.8300 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323053469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:50 Heat of formation + Delta-G solvation = -114.458652 kcal Electronic energy + Delta-G solvation = -28457.468269 eV Core-core repulsion = 24081.992000 eV Total energy + Delta-G solvation = -4375.476269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29749 -40.21864 -39.22698 -38.34615 -37.95095 -35.50860 -34.50005 -33.77442 -33.25289 -31.58640 -31.43201 -30.30315 -28.30599 -26.04399 -25.35740 -24.20929 -23.10444 -22.41439 -20.39363 -20.04942 -19.79571 -18.77581 -18.11366 -17.78045 -16.98436 -16.43268 -16.30930 -15.94018 -15.79663 -15.68362 -15.37882 -15.23228 -14.93601 -14.56125 -14.41990 -14.15071 -14.03503 -13.75928 -13.55138 -13.49438 -12.90447 -12.65470 -12.47064 -12.30575 -12.21955 -12.07972 -11.98305 -11.66514 -11.55102 -11.53670 -11.12280 -10.86706 -10.51896 -10.33689 -10.00863 -9.77583 -9.66065 -9.37544 -9.13512 -8.70184 -8.62385 -8.14071 -6.54670 -3.96761 0.25432 0.78487 1.38379 2.04811 2.14660 3.05575 3.12748 3.20858 3.24539 3.39034 3.44354 3.66229 3.67973 4.07890 4.36754 4.40601 4.51565 4.61233 4.68968 4.72369 4.75656 4.81549 5.00167 5.05725 5.12964 5.27703 5.44204 5.46181 5.56149 5.69152 5.78709 5.78874 5.83722 5.85380 5.93154 5.94510 5.97532 6.30794 6.47317 6.72369 7.24438 7.28704 7.43526 7.59408 7.85275 7.97781 8.40529 9.01154 9.33843 9.81741 10.61901 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.001853 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.075757 B =15104.420925 C =16613.885590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.391 3.609 4 O -0.441 6.441 5 C -0.151 4.151 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.111 4.111 9 C 0.136 3.864 10 N -0.650 5.650 11 C 0.509 3.491 12 O -0.487 6.487 13 C 0.508 3.492 14 O -0.527 6.527 15 N -0.668 5.668 16 C 0.106 3.894 17 C 0.424 3.576 18 O -0.592 6.592 19 N -0.546 5.546 20 C -0.306 4.306 21 H 0.106 0.894 22 C 0.027 3.973 23 N -0.894 5.894 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 C -0.065 4.065 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.425 0.575 38 H 0.425 0.575 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -28.991 -7.462 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.268 3.732 4 O -0.315 6.315 5 C -0.153 4.153 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.132 4.132 9 C 0.042 3.958 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.359 6.359 13 C 0.287 3.713 14 O -0.405 6.405 15 N -0.323 5.323 16 C -0.021 4.021 17 C 0.209 3.791 18 O -0.478 6.478 19 N -0.180 5.180 20 C -0.435 4.435 21 H 0.124 0.876 22 C -0.176 4.176 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.263 0.737 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.699 -28.470 -7.045 29.452 hybrid contribution 0.260 0.884 0.195 0.942 sum 2.959 -27.586 -6.850 28.577 Atomic orbital electron populations 1.21611 0.93510 1.01855 1.03350 1.21977 0.98492 0.95438 1.04579 1.22544 0.87635 0.91424 0.71646 1.90576 1.58164 1.47739 1.35018 1.20413 0.95314 0.93556 1.06010 1.21421 0.92922 0.98616 0.97882 1.20925 0.95547 0.96108 1.00436 1.21196 0.99590 0.91809 1.00572 1.17638 0.92810 0.83573 1.01736 1.43145 1.28036 1.05640 1.52934 1.20439 0.83807 0.87012 0.79623 1.90851 1.25066 1.82748 1.37202 1.19621 0.84316 0.85864 0.81533 1.90767 1.26124 1.82967 1.40653 1.45519 1.31593 1.06304 1.48906 1.21150 0.99032 0.80026 1.01918 1.19621 0.88370 0.83689 0.87372 1.90546 1.33758 1.73324 1.50185 1.41759 1.27683 1.04647 1.43961 1.19702 1.09131 0.88343 1.26349 0.87622 1.25335 0.97363 0.97334 0.97607 1.69604 1.28747 1.13295 1.41750 0.85852 0.79925 0.78185 0.79909 1.19724 1.20835 1.19720 1.21491 0.94358 0.97386 0.95236 0.91946 0.92031 0.91966 0.88256 0.88293 0.84817 0.84706 0.84790 0.73662 0.73487 0.88980 0.88990 0.77000 0.91489 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.20 37.16 0.34 -0.65 16 2 C -0.17 -0.99 5.03 -27.88 -0.14 -1.13 16 3 C 0.39 3.97 7.12 -30.68 -0.22 3.75 16 4 O -0.44 -6.31 15.97 5.58 0.09 -6.22 16 5 C -0.15 -1.48 5.87 -105.09 -0.62 -2.09 16 6 C -0.09 -0.57 9.47 -39.07 -0.37 -0.94 16 7 C -0.11 -0.65 10.02 -39.68 -0.40 -1.05 16 8 C -0.11 -0.81 9.96 -39.26 -0.39 -1.20 16 9 C 0.14 1.42 6.27 -83.80 -0.53 0.89 16 10 N -0.65 -7.00 5.32 -10.33 -0.05 -7.06 16 11 C 0.51 7.17 7.62 -11.63 -0.09 7.08 16 12 O -0.49 -8.11 14.16 5.48 0.08 -8.03 16 13 C 0.51 7.80 7.89 -11.63 -0.09 7.71 16 14 O -0.53 -8.47 16.48 5.49 0.09 -8.38 16 15 N -0.67 -11.38 5.52 -61.94 -0.34 -11.72 16 16 C 0.11 1.87 6.15 -5.20 -0.03 1.84 16 17 C 0.42 9.65 7.85 -10.99 -0.09 9.57 16 18 O -0.59 -15.42 15.24 5.54 0.08 -15.33 16 19 N -0.55 -13.34 5.29 -10.97 -0.06 -13.39 16 20 C -0.31 -8.28 9.68 -14.94 -0.14 -8.42 16 21 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 23 N -0.89 -23.58 13.05 55.50 0.72 -22.85 16 24 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 C -0.06 -0.78 8.20 -38.88 -0.32 -1.10 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.10 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.13 0.43 7.04 -52.49 -0.37 0.06 16 35 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.42 3.62 8.30 -40.82 -0.34 3.28 16 38 H 0.42 7.77 6.91 -40.82 -0.28 7.49 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 9.19 7.90 -40.82 -0.32 8.86 16 42 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.15 2.20 6.00 -52.49 -0.32 1.89 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -33.88 382.26 -6.76 -40.64 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -4.93 Total: 16.24 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -3.18 Total: 14.84 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.27 Total: -55.03 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: 0.34 Total: -37.97 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.88 -6.76 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323053469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.824 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds