Wall clock time and date at job start Wed Apr 1 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47466 * 2 1 4 4 O 1.21254 * 119.99604 * 0.02562 * 3 2 1 5 5 C 1.47176 * 120.00007 * 180.02562 * 3 2 1 6 6 C 1.39904 * 120.13780 * 359.72199 * 5 3 2 7 7 C 1.37919 * 119.98035 * 179.72825 * 6 5 3 8 8 C 1.38287 * 120.25390 * 0.57117 * 7 6 5 9 9 C 1.39045 * 120.27184 * 359.70805 * 8 7 6 10 10 N 1.39770 * 119.98695 * 180.02562 * 9 8 7 11 11 C 1.34770 * 119.99698 * 213.38353 * 10 9 8 12 12 O 1.21372 * 120.00362 * 5.27500 * 11 10 9 13 13 C 1.49357 * 119.99967 * 185.28179 * 11 10 9 14 14 O 1.21357 * 120.00100 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00149 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99852 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47044 * 179.97438 * 16 15 13 18 18 O 1.21297 * 120.00046 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00422 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00652 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00458 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99923 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00143 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46886 * 60.00376 * 24 22 20 26 26 H 1.48501 * 109.46758 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47173 * 299.99786 * 24 22 20 28 28 C 1.38625 * 120.02308 * 359.97438 * 9 8 7 29 29 H 1.09007 * 109.46297 * 299.99844 * 1 2 3 30 30 H 1.08993 * 109.47029 * 59.99460 * 1 2 3 31 31 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47440 * 120.00440 * 2 1 3 33 33 H 1.09007 * 109.46815 * 240.00060 * 2 1 3 34 34 H 1.07996 * 120.00781 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.87332 * 180.29922 * 7 6 5 36 36 H 1.07999 * 119.86290 * 179.72317 * 8 7 6 37 37 H 0.97000 * 119.99877 * 33.38591 * 10 9 8 38 38 H 0.97000 * 120.00135 * 359.97438 * 15 13 11 39 39 H 1.09001 * 109.47198 * 299.99736 * 16 15 13 40 40 H 1.08994 * 109.47320 * 59.99889 * 16 15 13 41 41 H 0.97005 * 119.99981 * 0.02562 * 19 17 16 42 42 H 0.97000 * 120.00059 * 179.97438 * 23 22 20 43 43 H 1.07997 * 120.12913 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2445 2.3424 0.0005 5 6 3.4794 1.6897 -0.0006 6 6 4.3911 0.6284 0.0048 7 6 5.7464 0.8841 -0.0015 8 6 6.2096 2.1870 -0.0011 9 6 5.3130 3.2497 -0.0005 10 7 5.7878 4.5643 -0.0006 11 6 5.1003 5.5291 0.6421 12 8 4.1221 5.2413 1.3004 13 6 5.5422 6.9524 0.5441 14 8 6.5205 7.2402 -0.1139 15 7 4.8550 7.9172 1.1872 16 6 5.2888 9.3132 1.0915 17 6 4.3579 10.1846 1.8946 18 8 3.4242 9.6883 2.4888 19 7 4.5633 11.5153 1.9534 20 6 3.7167 12.3080 2.6844 21 1 2.8848 11.8662 3.2129 22 6 3.9282 13.6800 2.7446 23 7 4.9401 14.2177 2.1012 24 14 2.7742 14.7602 3.7401 25 1 2.7974 14.3310 5.1615 26 1 3.2136 16.1754 3.6426 27 1 1.3941 14.6331 3.2070 28 6 3.9483 3.0059 -0.0009 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 4.0336 -0.3907 0.0089 35 1 6.4485 0.0635 -0.0022 36 1 7.2722 2.3799 -0.0014 37 1 6.6120 4.7823 -0.4633 38 1 4.0733 7.6872 1.7134 39 1 6.3020 9.4065 1.4824 40 1 5.2714 9.6284 0.0483 41 1 5.3102 11.9122 1.4785 42 1 5.0875 15.1755 2.1429 43 1 3.2504 3.8300 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323053469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:49 Heat of formation + Delta-G solvation = -140.849171 kcal Electronic energy + Delta-G solvation = -28458.612647 eV Core-core repulsion = 24081.992000 eV Total energy + Delta-G solvation = -4376.620647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32814 -41.14504 -40.50742 -39.80845 -39.00805 -36.62498 -36.12712 -35.33370 -33.85958 -33.42200 -32.21417 -31.08746 -29.80048 -27.05752 -26.62496 -25.56503 -23.73130 -23.27205 -21.54812 -21.45517 -20.82919 -20.25384 -19.74631 -18.68513 -18.14054 -17.50650 -17.34566 -17.02989 -16.96067 -16.68505 -16.48808 -16.45173 -16.26178 -16.03512 -15.67555 -15.37375 -15.13728 -14.97170 -14.59687 -14.34574 -14.06797 -13.74677 -13.61907 -13.57250 -13.22363 -13.14510 -12.93593 -12.87697 -12.72959 -12.50013 -12.36698 -12.14855 -12.03195 -11.70408 -11.60497 -10.95928 -10.74614 -10.63455 -10.50781 -10.13027 -10.03520 -9.36915 -8.54046 -6.04254 -0.42582 -0.12315 0.46523 0.99963 1.35542 1.39439 1.41544 1.52122 1.84592 1.91963 2.21928 2.37841 2.77029 2.94638 3.01386 3.12754 3.20510 3.82946 3.94235 4.05685 4.12592 4.17429 4.25479 4.28142 4.31702 4.33138 4.38047 4.42633 4.74074 4.87867 4.92316 4.98271 5.05194 5.13915 5.14358 5.28051 5.34342 5.35498 5.35907 5.69774 5.85568 5.88001 6.11584 6.44249 6.48997 6.54545 6.68077 7.00553 7.38897 7.90907 8.62211 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.001853 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.075757 B =15104.420925 C =16613.885590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 C 0.385 3.615 4 O -0.503 6.503 5 C -0.174 4.174 6 C -0.067 4.067 7 C -0.103 4.103 8 C -0.098 4.098 9 C 0.108 3.892 10 N -0.630 5.630 11 C 0.511 3.489 12 O -0.522 6.522 13 C 0.515 3.485 14 O -0.530 6.530 15 N -0.678 5.678 16 C 0.119 3.881 17 C 0.426 3.574 18 O -0.628 6.628 19 N -0.553 5.553 20 C -0.340 4.340 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.912 5.912 24 Si 0.996 3.004 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C -0.097 4.097 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.164 0.836 37 H 0.436 0.564 38 H 0.418 0.582 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.401 0.599 42 H 0.281 0.719 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -32.234 -8.031 33.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.266 3.734 4 O -0.382 6.382 5 C -0.175 4.175 6 C -0.086 4.086 7 C -0.121 4.121 8 C -0.118 4.118 9 C 0.014 3.986 10 N -0.278 5.278 11 C 0.292 3.708 12 O -0.396 6.396 13 C 0.295 3.705 14 O -0.408 6.408 15 N -0.333 5.333 16 C -0.008 4.008 17 C 0.213 3.787 18 O -0.516 6.516 19 N -0.189 5.189 20 C -0.470 4.470 21 H 0.101 0.899 22 C -0.209 4.209 23 N -0.551 5.551 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.197 1.197 28 C -0.118 4.118 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.277 0.723 38 H 0.257 0.743 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.236 0.764 42 H 0.091 0.909 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.069 -31.753 -7.663 33.056 hybrid contribution -0.385 1.720 0.312 1.789 sum 4.684 -30.034 -7.351 31.273 Atomic orbital electron populations 1.21639 0.94644 1.02915 1.01427 1.22075 0.97496 0.92582 1.07428 1.23399 0.87716 0.92886 0.69390 1.90560 1.59488 1.49862 1.38242 1.20596 0.95905 0.93614 1.07434 1.21918 0.92686 0.99366 0.94603 1.21506 0.96006 0.96508 0.98035 1.21615 1.00480 0.91453 0.98233 1.17863 0.92761 0.83812 1.04119 1.42990 1.27639 1.05578 1.51616 1.20182 0.83723 0.86907 0.79955 1.90852 1.26623 1.83000 1.39172 1.19764 0.83801 0.86175 0.80753 1.90755 1.26161 1.83218 1.40652 1.45553 1.31784 1.06365 1.49567 1.21040 0.98306 0.79472 1.01937 1.20420 0.88188 0.83556 0.86503 1.90525 1.35516 1.73996 1.51561 1.41776 1.27731 1.05182 1.44208 1.19680 1.09811 0.89462 1.28012 0.89869 1.26096 0.98679 0.97880 0.98195 1.69658 1.29478 1.13874 1.42106 0.84948 0.77902 0.76931 0.78327 1.19590 1.19320 1.19718 1.21345 0.94764 0.97625 0.98028 0.94196 0.93838 0.89197 0.85259 0.84835 0.80529 0.80254 0.81839 0.72343 0.74322 0.86813 0.87084 0.76391 0.90940 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.20 71.98 0.66 -1.29 16 2 C -0.16 -1.51 5.03 29.85 0.15 -1.36 16 3 C 0.39 8.01 7.12 28.04 0.20 8.21 16 4 O -0.50 -16.05 15.97 -2.95 -0.05 -16.09 16 5 C -0.17 -3.31 5.87 -20.17 -0.12 -3.42 16 6 C -0.07 -0.58 9.47 22.60 0.21 -0.37 16 7 C -0.10 -0.66 10.02 22.21 0.22 -0.44 16 8 C -0.10 -1.09 9.96 22.48 0.22 -0.86 16 9 C 0.11 2.19 6.27 38.16 0.24 2.43 16 10 N -0.63 -13.62 5.32 -304.95 -1.62 -15.25 16 11 C 0.51 15.07 7.62 87.24 0.66 15.73 16 12 O -0.52 -18.90 14.16 -3.31 -0.05 -18.94 16 13 C 0.52 16.08 7.89 87.24 0.69 16.77 16 14 O -0.53 -16.65 16.48 -3.27 -0.05 -16.70 16 15 N -0.68 -23.76 5.52 -468.25 -2.59 -26.34 16 16 C 0.12 4.21 6.15 85.63 0.53 4.74 16 17 C 0.43 19.95 7.85 87.66 0.69 20.64 16 18 O -0.63 -34.11 15.24 -3.08 -0.05 -34.16 16 19 N -0.55 -27.73 5.29 -306.99 -1.62 -29.35 16 20 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.38 5.50 84.92 0.47 0.09 16 23 N -0.91 -48.00 13.05 21.66 0.28 -47.72 16 24 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C -0.10 -2.51 8.20 22.72 0.19 -2.32 16 29 H 0.04 0.69 8.10 -2.38 -0.02 0.67 16 30 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.13 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.13 0.40 8.09 -2.38 -0.02 0.38 16 34 H 0.18 -0.02 7.04 -2.91 -0.02 -0.04 16 35 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.44 7.00 8.30 -92.71 -0.77 6.23 16 38 H 0.42 16.19 6.91 -92.71 -0.64 15.55 16 39 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.40 18.91 7.90 -92.70 -0.73 18.17 16 42 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.10 3.55 6.00 -2.91 -0.02 3.53 16 Total: -1.00 -80.54 382.26 1.08 -79.46 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.03 Total: 40.44 kcal Atomic # 6 Polarization: 34.58 SS G_CDS: 5.83 Total: 40.41 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -5.55 Total: -118.65 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -0.19 Total: -85.90 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -80.54 1.08 -79.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323053469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.384 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds