Wall clock time and date at job start Wed Apr 1 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.05746 * 2 1 4 4 C 1.50766 * 109.91947 * 121.50063 * 2 1 3 5 5 O 1.21288 * 125.42751 * 299.35655 * 4 2 1 6 6 N 1.34298 * 109.15051 * 119.63072 * 4 2 1 7 7 C 1.46498 * 124.85919 * 179.75971 * 6 4 2 8 8 C 1.46229 * 110.28898 * 359.74468 * 6 4 2 9 9 N 1.46796 * 108.05338 * 359.97438 * 8 6 4 10 10 C 1.34773 * 127.02443 * 180.02562 * 9 8 6 11 11 O 1.21375 * 119.99834 * 180.02562 * 10 9 8 12 12 C 1.49315 * 120.00655 * 0.29672 * 10 9 8 13 13 O 1.21395 * 119.99920 * 359.72644 * 12 10 9 14 14 N 1.34770 * 120.00565 * 179.72504 * 12 10 9 15 15 C 1.39747 * 120.00519 * 175.49700 * 14 12 10 16 16 C 1.38989 * 120.00993 * 214.86957 * 15 14 12 17 17 C 1.37965 * 119.99334 * 179.76902 * 16 15 14 18 18 C 1.38939 * 120.00788 * 0.52768 * 17 16 15 19 19 O 1.35754 * 119.99589 * 179.72520 * 18 17 16 20 20 C 1.34808 * 116.99695 * 185.32369 * 19 18 17 21 21 H 1.07997 * 120.00397 * 354.96060 * 20 19 18 22 22 C 1.38655 * 119.99789 * 174.96320 * 20 19 18 23 23 N 1.31556 * 120.00222 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47371 * 90.00154 * 24 22 20 26 26 H 1.48497 * 109.47282 * 210.00126 * 24 22 20 27 27 H 1.48499 * 109.47446 * 329.99991 * 24 22 20 28 28 C 1.38939 * 120.01100 * 359.70189 * 18 17 16 29 29 C 1.37973 * 120.00735 * 0.04578 * 28 18 17 30 30 H 1.08997 * 109.46965 * 181.43193 * 1 2 3 31 31 H 1.08997 * 109.47394 * 301.43996 * 1 2 3 32 32 H 1.09001 * 109.46781 * 61.43686 * 1 2 3 33 33 H 1.09007 * 109.47400 * 269.98464 * 7 6 4 34 34 H 1.08998 * 109.47080 * 29.97957 * 7 6 4 35 35 H 1.09000 * 109.47437 * 149.97719 * 7 6 4 36 36 H 1.08998 * 109.74999 * 240.33562 * 8 6 4 37 37 H 1.09006 * 109.75228 * 119.65334 * 8 6 4 38 38 H 0.97004 * 120.00310 * 355.49997 * 14 12 10 39 39 H 1.07998 * 120.00348 * 359.97438 * 16 15 14 40 40 H 1.08001 * 120.00366 * 180.25181 * 17 16 15 41 41 H 0.96995 * 120.00144 * 179.97438 * 23 22 20 42 42 H 1.07999 * 119.99689 * 180.02562 * 28 18 17 43 43 H 1.08003 * 120.00162 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0437 -0.7406 1.2086 5 8 1.8277 -0.4378 2.3630 6 7 2.7835 -1.7857 0.8033 7 6 3.4525 -2.7346 1.6968 8 6 2.8256 -1.8411 -0.6573 9 7 2.0333 -0.7204 -1.1781 10 6 1.8167 -0.4118 -2.4720 11 8 1.1364 0.5510 -2.7606 12 6 2.4087 -1.2578 -3.5506 13 8 3.0892 -2.2208 -3.2621 14 7 2.1875 -0.9524 -4.8445 15 6 2.8171 -1.6865 -5.8533 16 6 3.2169 -1.0559 -7.0256 17 6 3.8427 -1.7800 -8.0193 18 6 4.0635 -3.1416 -7.8529 19 8 4.6743 -3.8549 -8.8332 20 6 4.7592 -5.1888 -8.6571 21 1 4.4249 -5.6337 -7.7316 22 6 5.2758 -5.9895 -9.6644 23 7 5.3582 -7.2912 -9.4928 24 14 5.8548 -5.2198 -11.2649 25 1 7.2920 -4.8638 -11.1516 26 1 5.6710 -6.1888 -12.3751 27 1 5.0617 -3.9950 -11.5407 28 6 3.6596 -3.7732 -6.6831 29 6 3.0384 -3.0486 -5.6868 30 1 -0.3633 -1.0273 0.0257 31 1 -0.3634 0.5360 0.8768 32 1 -0.3633 0.4914 -0.9026 33 1 4.4577 -2.3768 1.9200 34 1 2.8847 -2.8239 2.6228 35 1 3.5129 -3.7091 1.2123 36 1 2.4012 -2.7839 -1.0025 37 1 3.8568 -1.7543 -0.9997 38 1 1.5913 -0.2230 -5.0757 39 1 3.0407 0.0014 -7.1573 40 1 4.1572 -1.2893 -8.9286 41 1 5.7193 -7.8514 -10.1976 42 1 3.8316 -4.8315 -6.5538 43 1 2.7241 -3.5397 -4.7777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328235507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:45 Heat of formation + Delta-G solvation = -58.914447 kcal Electronic energy + Delta-G solvation = -29587.629128 eV Core-core repulsion = 25214.561437 eV Total energy + Delta-G solvation = -4373.067691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81148 -40.59414 -39.34515 -38.58990 -37.29467 -36.79512 -34.98921 -34.17865 -32.42649 -31.72455 -30.44086 -28.82998 -28.52334 -26.34473 -25.80042 -24.92565 -23.39160 -22.50361 -21.21721 -20.60717 -20.13715 -18.65510 -17.88598 -17.60495 -17.36168 -17.16777 -16.75485 -16.25928 -15.96268 -15.78930 -15.48573 -14.86571 -14.56656 -14.43604 -14.23094 -14.03446 -13.92334 -13.89219 -13.68229 -13.41061 -12.95020 -12.83781 -12.77128 -12.65305 -12.55024 -12.38055 -12.16732 -11.99007 -11.84170 -11.59737 -11.04982 -10.84102 -10.52574 -10.31487 -9.94625 -9.89493 -9.76404 -9.38246 -9.08727 -8.87645 -8.43154 -7.23655 -6.50243 -4.16125 0.97551 1.59372 1.93262 1.96278 2.05561 2.31240 2.92220 3.07879 3.17647 3.20437 3.34055 3.60853 4.02504 4.16250 4.33254 4.38431 4.54453 4.72772 4.73741 4.82202 4.83441 5.01866 5.03486 5.07197 5.26682 5.29061 5.37342 5.42794 5.49567 5.68926 5.72979 5.84282 5.94510 6.04507 6.38238 6.40495 6.53083 6.62209 6.71172 6.86660 7.06080 7.15579 7.39168 7.43724 7.50159 7.67679 7.84040 7.94476 8.84121 9.44476 10.56867 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002116 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.561971 B =13227.053730 C =14284.582277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 H 0.118 0.882 4 C 0.522 3.478 5 O -0.510 6.510 6 N -0.630 5.630 7 C 0.101 3.899 8 C 0.334 3.666 9 N -0.602 5.602 10 C 0.544 3.456 11 O -0.504 6.504 12 C 0.501 3.499 13 O -0.503 6.503 14 N -0.620 5.620 15 C 0.029 3.971 16 C -0.085 4.085 17 C -0.177 4.177 18 C 0.156 3.844 19 O -0.212 6.212 20 C -0.390 4.390 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.875 5.875 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.209 4.209 29 C -0.061 4.061 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.416 0.584 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.281 0.719 42 H 0.139 0.861 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 12.252 16.990 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 H 0.136 0.864 4 C 0.308 3.692 5 O -0.384 6.384 6 N -0.366 5.366 7 C -0.039 4.039 8 C 0.126 3.874 9 N -0.340 5.340 10 C 0.327 3.673 11 O -0.377 6.377 12 C 0.282 3.718 13 O -0.378 6.378 14 N -0.266 5.266 15 C -0.064 4.064 16 C -0.105 4.105 17 C -0.197 4.197 18 C 0.103 3.897 19 O -0.116 6.116 20 C -0.466 4.466 21 H 0.126 0.874 22 C -0.140 4.140 23 N -0.512 5.512 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.183 1.183 28 C -0.229 4.229 29 C -0.080 4.080 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.252 0.748 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.511 12.050 17.299 22.065 hybrid contribution 0.123 0.335 -0.721 0.805 sum -6.389 12.385 16.577 21.657 Atomic orbital electron populations 1.21976 0.91005 1.03499 1.04643 1.21619 0.97751 0.97893 0.82991 0.86411 1.20400 0.78088 0.80942 0.89768 1.90787 1.59417 1.69100 1.19108 1.48390 1.51476 1.29550 1.07179 1.21624 0.97251 0.91680 0.93393 1.21662 0.97625 0.90437 0.77717 1.47958 1.51408 1.29930 1.04697 1.19768 0.81177 0.85200 0.81117 1.90795 1.37667 1.27894 1.81358 1.19687 0.82451 0.85806 0.83834 1.90780 1.37739 1.27075 1.82195 1.42788 1.45207 1.34965 1.03602 1.17265 1.07809 0.91165 0.90122 1.20378 0.98790 0.98572 0.92759 1.20003 1.07027 0.91946 1.00745 1.19194 0.90959 0.91183 0.88326 1.83561 1.66260 1.21368 1.40395 1.20793 1.43468 0.77543 1.04758 0.87444 1.24491 0.96047 0.94495 0.98947 1.69640 1.43365 1.03232 1.34968 0.86168 0.79750 0.79594 0.81336 1.19810 1.20744 1.18280 1.21211 1.05875 1.01620 0.94161 1.20878 0.97180 0.91410 0.98565 0.91844 0.90014 0.89688 0.91706 0.90013 0.89991 0.88645 0.88580 0.74770 0.86197 0.85804 0.90901 0.84389 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.29 37.16 0.35 -0.89 16 2 C 0.10 0.92 3.63 -68.79 -0.25 0.67 16 3 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.52 5.22 7.41 -11.17 -0.08 5.14 16 5 O -0.51 -6.54 17.67 5.55 0.10 -6.44 16 6 N -0.63 -5.20 3.33 -185.49 -0.62 -5.81 16 7 C 0.10 0.59 11.01 59.85 0.66 1.25 16 8 C 0.33 2.81 6.17 -63.72 -0.39 2.42 16 9 N -0.60 -5.71 3.10 -171.17 -0.53 -6.25 16 10 C 0.54 5.96 7.75 -11.65 -0.09 5.87 16 11 O -0.50 -6.07 15.62 5.48 0.09 -5.99 16 12 C 0.50 6.22 7.70 -11.65 -0.09 6.13 16 13 O -0.50 -7.06 11.75 5.46 0.06 -7.00 16 14 N -0.62 -7.71 5.32 -10.27 -0.05 -7.77 16 15 C 0.03 0.44 6.30 -83.69 -0.53 -0.08 16 16 C -0.08 -1.29 9.96 -39.40 -0.39 -1.68 16 17 C -0.18 -3.19 9.98 -39.42 -0.39 -3.58 16 18 C 0.16 3.38 6.65 -39.06 -0.26 3.12 16 19 O -0.21 -5.29 8.58 0.10 0.00 -5.29 16 20 C -0.39 -10.54 9.94 30.89 0.31 -10.23 16 21 H 0.11 2.96 5.43 -52.49 -0.28 2.68 16 22 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 23 N -0.87 -24.49 13.96 55.48 0.77 -23.71 16 24 Si 0.91 20.85 28.62 -169.99 -4.86 15.99 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 28 C -0.21 -4.28 9.16 -39.42 -0.36 -4.64 16 29 C -0.06 -1.07 8.69 -39.40 -0.34 -1.41 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.74 6.91 -51.93 -0.36 0.38 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 38 H 0.42 4.21 8.30 -40.82 -0.34 3.87 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.14 2.99 5.63 -52.49 -0.30 2.70 16 43 H 0.13 2.17 6.22 -52.48 -0.33 1.85 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -31.32 369.41 -6.36 -37.68 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.91 Total: 5.32 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.97 Total: 3.71 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.43 Total: -43.54 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.25 Total: -24.72 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.32 -6.36 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328235507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.234 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds