Wall clock time and date at job start Wed Apr 1 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.06311 * 2 1 4 4 C 1.50779 * 110.15637 * 238.63449 * 2 1 3 5 5 O 1.21276 * 125.42365 * 60.80624 * 4 2 1 6 6 N 1.34297 * 109.15071 * 241.08210 * 4 2 1 7 7 C 1.46493 * 124.85552 * 179.72016 * 6 4 2 8 8 C 1.46226 * 110.29228 * 359.74342 * 6 4 2 9 9 N 1.46797 * 108.05430 * 359.97438 * 8 6 4 10 10 C 1.34783 * 127.02832 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99498 * 180.02562 * 10 9 8 12 12 C 1.49313 * 120.00331 * 0.02562 * 10 9 8 13 13 O 1.21390 * 119.99796 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00323 * 179.97438 * 12 10 9 15 15 C 1.39739 * 120.00216 * 174.78312 * 14 12 10 16 16 C 1.39001 * 120.00770 * 146.29079 * 15 14 12 17 17 C 1.37966 * 119.98939 * 179.97438 * 16 15 14 18 18 C 1.38931 * 120.01069 * 359.97438 * 17 16 15 19 19 O 1.35756 * 119.99653 * 179.97438 * 18 17 16 20 20 C 1.34811 * 116.99671 * 5.91453 * 19 18 17 21 21 H 1.07994 * 119.99803 * 5.40399 * 20 19 18 22 22 C 1.38649 * 119.99833 * 185.13244 * 20 19 18 23 23 N 1.31564 * 120.00049 * 0.27026 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 180.27474 * 22 20 19 25 25 H 1.48504 * 109.47169 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47439 * 119.99536 * 24 22 20 27 27 H 1.48503 * 109.47213 * 239.99827 * 24 22 20 28 28 C 1.38938 * 120.01765 * 0.27648 * 18 17 16 29 29 C 1.37980 * 120.00200 * 359.45006 * 28 18 17 30 30 H 1.09000 * 109.47246 * 298.56909 * 1 2 3 31 31 H 1.09006 * 109.47221 * 58.56584 * 1 2 3 32 32 H 1.08997 * 109.47568 * 178.56125 * 1 2 3 33 33 H 1.08999 * 109.47130 * 270.02664 * 7 6 4 34 34 H 1.09002 * 109.47249 * 30.02730 * 7 6 4 35 35 H 1.09001 * 109.47494 * 150.02016 * 7 6 4 36 36 H 1.08998 * 109.75243 * 240.34600 * 8 6 4 37 37 H 1.08997 * 109.75143 * 119.65272 * 8 6 4 38 38 H 0.97004 * 120.00004 * 354.78014 * 14 12 10 39 39 H 1.07994 * 120.00046 * 359.95768 * 16 15 14 40 40 H 1.07997 * 119.99524 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99786 * 180.02562 * 23 22 20 42 42 H 1.07993 * 120.00367 * 179.70263 * 28 18 17 43 43 H 1.07998 * 120.00142 * 180.26882 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0495 -0.7367 -1.2086 5 8 1.8392 -0.4300 -2.3629 6 7 2.7772 -1.7902 -0.8033 7 6 3.4384 -2.7446 -1.6966 8 6 2.8149 -1.8487 0.6574 9 7 2.0341 -0.7199 1.1781 10 6 1.8184 -0.4105 2.4721 11 8 1.1475 0.5588 2.7605 12 6 2.4049 -1.2602 3.5508 13 8 3.0763 -2.2295 3.2622 14 7 2.1897 -0.9506 4.8446 15 6 2.6453 -1.8044 5.8526 16 6 3.0792 -1.2799 7.0645 17 6 3.5285 -2.1234 8.0596 18 6 3.5468 -3.4968 7.8508 19 8 3.9894 -4.3264 8.8299 20 6 4.2806 -3.7664 10.0212 21 1 4.0760 -2.7196 10.1901 22 6 4.8376 -4.5358 11.0312 23 7 5.0868 -5.8111 10.8253 24 14 5.2340 -3.7618 12.6843 25 1 4.8618 -2.3243 12.6599 26 1 4.4677 -4.4538 13.7516 27 1 6.6883 -3.8914 12.9557 28 6 3.1180 -4.0211 6.6376 29 6 2.6633 -3.1785 5.6440 30 1 -0.3634 0.4914 0.9025 31 1 -0.3634 0.5360 -0.8769 32 1 -0.3634 -1.0273 -0.0258 33 1 2.7569 -3.5654 -1.9198 34 1 3.7175 -2.2420 -2.6227 35 1 4.3328 -3.1363 -1.2121 36 1 3.8460 -1.7733 1.0026 37 1 2.3795 -2.7874 0.9997 38 1 1.7185 -0.1349 5.0762 39 1 3.0649 -0.2124 7.2270 40 1 3.8661 -1.7159 9.0011 41 1 5.4761 -6.3495 11.5321 42 1 3.1368 -5.0883 6.4738 43 1 2.3260 -3.5864 4.7027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328235547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:50 Heat of formation + Delta-G solvation = -62.099392 kcal Electronic energy + Delta-G solvation = -29478.052093 eV Core-core repulsion = 25104.846292 eV Total energy + Delta-G solvation = -4373.205801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79405 -40.54748 -39.24760 -38.48998 -37.27819 -36.66029 -34.97246 -34.11872 -32.29338 -31.70565 -30.36986 -28.76151 -28.34208 -26.33876 -25.75378 -25.07796 -23.34301 -22.40354 -21.26609 -20.60094 -20.14114 -18.46800 -18.12445 -17.48096 -17.38620 -17.05132 -16.49075 -16.27885 -15.82890 -15.80510 -15.50822 -14.68908 -14.64284 -14.47423 -14.38193 -14.16098 -13.74340 -13.66756 -13.61619 -13.37696 -12.95342 -12.83137 -12.80445 -12.65751 -12.62435 -12.17118 -12.00877 -11.77450 -11.73312 -11.58737 -11.15716 -10.78028 -10.53087 -10.47769 -9.94603 -9.88495 -9.73776 -9.38734 -9.08147 -8.83175 -8.35361 -7.09297 -6.54598 -4.12174 1.00490 1.62734 1.93444 2.05798 2.13954 2.32076 2.96721 3.07753 3.08453 3.11940 3.14206 3.61424 3.88934 4.07232 4.36963 4.44693 4.55031 4.74833 4.82001 4.83352 5.00980 5.04256 5.06599 5.17624 5.25684 5.29862 5.38177 5.43262 5.61043 5.69590 5.73712 5.91588 6.04670 6.07610 6.40487 6.54543 6.62225 6.67824 6.74295 6.95737 7.06968 7.13631 7.29917 7.46192 7.50693 7.58957 7.89212 7.91797 8.90643 9.58911 10.62902 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001949 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.571150 B =14365.155560 C =15109.643823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 H 0.118 0.882 4 C 0.522 3.478 5 O -0.510 6.510 6 N -0.630 5.630 7 C 0.102 3.898 8 C 0.334 3.666 9 N -0.602 5.602 10 C 0.543 3.457 11 O -0.503 6.503 12 C 0.500 3.500 13 O -0.505 6.505 14 N -0.619 5.619 15 C 0.022 3.978 16 C -0.079 4.079 17 C -0.219 4.219 18 C 0.151 3.849 19 O -0.172 6.172 20 C -0.392 4.392 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.858 5.858 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.178 4.178 29 C -0.062 4.062 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.415 0.585 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.271 0.729 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 9.094 -19.033 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 H 0.135 0.865 4 C 0.308 3.692 5 O -0.384 6.384 6 N -0.366 5.366 7 C -0.039 4.039 8 C 0.126 3.874 9 N -0.341 5.341 10 C 0.327 3.673 11 O -0.377 6.377 12 C 0.281 3.719 13 O -0.380 6.380 14 N -0.264 5.264 15 C -0.070 4.070 16 C -0.099 4.099 17 C -0.239 4.239 18 C 0.096 3.904 19 O -0.074 6.074 20 C -0.468 4.468 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.492 5.492 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.198 4.198 29 C -0.082 4.082 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.254 8.600 -19.505 21.954 hybrid contribution 0.124 0.780 0.970 1.251 sum -5.130 9.380 -18.535 21.397 Atomic orbital electron populations 1.21971 0.90997 1.03490 1.04643 1.21613 0.97687 0.97956 0.83005 0.86453 1.20405 0.78142 0.80873 0.89770 1.90782 1.59083 1.69433 1.19126 1.48389 1.52242 1.28794 1.07198 1.21617 0.97381 0.91534 0.93401 1.21650 0.97830 0.90238 0.77668 1.47968 1.51814 1.29574 1.04698 1.19803 0.81118 0.85258 0.81119 1.90793 1.38034 1.27502 1.81355 1.19658 0.82325 0.86068 0.83849 1.90780 1.37222 1.27801 1.82201 1.42820 1.54779 1.25148 1.03634 1.17184 1.11093 0.89385 0.89331 1.20499 0.98274 0.98746 0.92396 1.20995 1.08960 0.93011 1.00935 1.19458 0.92208 0.89518 0.89204 1.83996 1.70758 1.33698 1.18967 1.21390 1.42586 0.96488 0.86357 0.88869 1.25326 0.96112 0.95512 0.99599 1.70049 1.39616 1.05674 1.33876 0.85627 0.78524 0.79028 0.80138 1.19027 1.20076 1.20085 1.20099 1.07534 0.99804 0.92373 1.20557 0.98382 0.90894 0.98352 0.89679 0.90024 0.91853 0.91732 0.90024 0.90017 0.88593 0.88699 0.74868 0.86796 0.84859 0.91907 0.85908 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.30 37.16 0.35 -0.91 16 2 C 0.10 0.93 3.61 -68.78 -0.25 0.68 16 3 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.52 5.22 7.43 -11.16 -0.08 5.13 16 5 O -0.51 -6.53 17.67 5.56 0.10 -6.43 16 6 N -0.63 -5.15 3.33 -185.50 -0.62 -5.77 16 7 C 0.10 0.57 11.01 59.84 0.66 1.23 16 8 C 0.33 2.80 6.17 -63.72 -0.39 2.41 16 9 N -0.60 -5.77 3.10 -171.17 -0.53 -6.31 16 10 C 0.54 6.08 7.75 -11.65 -0.09 5.99 16 11 O -0.50 -6.24 15.65 5.49 0.09 -6.15 16 12 C 0.50 6.35 7.59 -11.65 -0.09 6.26 16 13 O -0.50 -7.15 12.02 5.46 0.07 -7.09 16 14 N -0.62 -8.05 5.32 -10.27 -0.05 -8.11 16 15 C 0.02 0.36 6.27 -83.69 -0.52 -0.17 16 16 C -0.08 -1.32 9.96 -39.40 -0.39 -1.71 16 17 C -0.22 -4.40 9.12 -39.42 -0.36 -4.76 16 18 C 0.15 3.44 6.65 -39.07 -0.26 3.18 16 19 O -0.17 -4.67 9.75 0.08 0.00 -4.67 16 20 C -0.39 -10.45 9.44 30.88 0.29 -10.15 16 21 H 0.09 2.27 5.29 -52.49 -0.28 2.00 16 22 C 0.04 1.04 5.49 -17.51 -0.10 0.95 16 23 N -0.86 -24.32 13.67 55.48 0.76 -23.56 16 24 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 28 C -0.18 -3.59 9.98 -39.42 -0.39 -3.99 16 29 C -0.06 -1.09 8.65 -39.39 -0.34 -1.43 16 30 H 0.08 0.76 6.94 -51.93 -0.36 0.40 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.48 7.98 -51.93 -0.41 0.07 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16 37 H 0.10 0.78 7.71 -51.93 -0.40 0.38 16 38 H 0.41 4.50 8.30 -40.82 -0.34 4.16 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.13 2.66 5.71 -52.49 -0.30 2.36 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 43 H 0.12 2.02 6.44 -52.49 -0.34 1.69 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -32.17 371.01 -6.52 -38.69 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.92 Total: 6.42 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.97 Total: 2.71 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.44 Total: -43.74 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.25 Total: -24.34 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.17 -6.52 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328235547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.406 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds