Wall clock time and date at job start Wed Apr 1 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.06311 * 2 1 4 4 C 1.50779 * 110.15637 * 238.63449 * 2 1 3 5 5 O 1.21276 * 125.42365 * 60.80624 * 4 2 1 6 6 N 1.34297 * 109.15071 * 241.08210 * 4 2 1 7 7 C 1.46493 * 124.85552 * 179.72016 * 6 4 2 8 8 C 1.46226 * 110.29228 * 359.74342 * 6 4 2 9 9 N 1.46797 * 108.05430 * 359.97438 * 8 6 4 10 10 C 1.34783 * 127.02832 * 180.02562 * 9 8 6 11 11 O 1.21363 * 119.99498 * 180.02562 * 10 9 8 12 12 C 1.49313 * 120.00331 * 0.02562 * 10 9 8 13 13 O 1.21390 * 119.99796 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00323 * 179.97438 * 12 10 9 15 15 C 1.39739 * 120.00216 * 174.78312 * 14 12 10 16 16 C 1.39001 * 120.00770 * 146.29079 * 15 14 12 17 17 C 1.37966 * 119.98939 * 179.97438 * 16 15 14 18 18 C 1.38931 * 120.01069 * 359.97438 * 17 16 15 19 19 O 1.35756 * 119.99653 * 179.97438 * 18 17 16 20 20 C 1.34811 * 116.99671 * 5.91453 * 19 18 17 21 21 H 1.07994 * 119.99803 * 5.40399 * 20 19 18 22 22 C 1.38649 * 119.99833 * 185.13244 * 20 19 18 23 23 N 1.31564 * 120.00049 * 0.27026 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 180.27474 * 22 20 19 25 25 H 1.48504 * 109.47169 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47439 * 119.99536 * 24 22 20 27 27 H 1.48503 * 109.47213 * 239.99827 * 24 22 20 28 28 C 1.38938 * 120.01765 * 0.27648 * 18 17 16 29 29 C 1.37980 * 120.00200 * 359.45006 * 28 18 17 30 30 H 1.09000 * 109.47246 * 298.56909 * 1 2 3 31 31 H 1.09006 * 109.47221 * 58.56584 * 1 2 3 32 32 H 1.08997 * 109.47568 * 178.56125 * 1 2 3 33 33 H 1.08999 * 109.47130 * 270.02664 * 7 6 4 34 34 H 1.09002 * 109.47249 * 30.02730 * 7 6 4 35 35 H 1.09001 * 109.47494 * 150.02016 * 7 6 4 36 36 H 1.08998 * 109.75243 * 240.34600 * 8 6 4 37 37 H 1.08997 * 109.75143 * 119.65272 * 8 6 4 38 38 H 0.97004 * 120.00004 * 354.78014 * 14 12 10 39 39 H 1.07994 * 120.00046 * 359.95768 * 16 15 14 40 40 H 1.07997 * 119.99524 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99786 * 180.02562 * 23 22 20 42 42 H 1.07993 * 120.00367 * 179.70263 * 28 18 17 43 43 H 1.07998 * 120.00142 * 180.26882 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0495 -0.7367 -1.2086 5 8 1.8392 -0.4300 -2.3629 6 7 2.7772 -1.7902 -0.8033 7 6 3.4384 -2.7446 -1.6966 8 6 2.8149 -1.8487 0.6574 9 7 2.0341 -0.7199 1.1781 10 6 1.8184 -0.4105 2.4721 11 8 1.1475 0.5588 2.7605 12 6 2.4049 -1.2602 3.5508 13 8 3.0763 -2.2295 3.2622 14 7 2.1897 -0.9506 4.8446 15 6 2.6453 -1.8044 5.8526 16 6 3.0792 -1.2799 7.0645 17 6 3.5285 -2.1234 8.0596 18 6 3.5468 -3.4968 7.8508 19 8 3.9894 -4.3264 8.8299 20 6 4.2806 -3.7664 10.0212 21 1 4.0760 -2.7196 10.1901 22 6 4.8376 -4.5358 11.0312 23 7 5.0868 -5.8111 10.8253 24 14 5.2340 -3.7618 12.6843 25 1 4.8618 -2.3243 12.6599 26 1 4.4677 -4.4538 13.7516 27 1 6.6883 -3.8914 12.9557 28 6 3.1180 -4.0211 6.6376 29 6 2.6633 -3.1785 5.6440 30 1 -0.3634 0.4914 0.9025 31 1 -0.3634 0.5360 -0.8769 32 1 -0.3634 -1.0273 -0.0258 33 1 2.7569 -3.5654 -1.9198 34 1 3.7175 -2.2420 -2.6227 35 1 4.3328 -3.1363 -1.2121 36 1 3.8460 -1.7733 1.0026 37 1 2.3795 -2.7874 0.9997 38 1 1.7185 -0.1349 5.0762 39 1 3.0649 -0.2124 7.2270 40 1 3.8661 -1.7159 9.0011 41 1 5.4761 -6.3495 11.5321 42 1 3.1368 -5.0883 6.4738 43 1 2.3260 -3.5864 4.7027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328235547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:49 Heat of formation + Delta-G solvation = -84.664371 kcal Electronic energy + Delta-G solvation = -29479.030584 eV Core-core repulsion = 25104.846292 eV Total energy + Delta-G solvation = -4374.184292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.65005 -41.62052 -40.62348 -39.71119 -38.29074 -37.98926 -35.82180 -35.31354 -34.15221 -32.48635 -31.89237 -29.91801 -29.25355 -27.46431 -27.04770 -26.20578 -24.30410 -23.87428 -22.61246 -21.41848 -21.21080 -19.88260 -19.41498 -18.92832 -18.32992 -18.02844 -17.75454 -17.11714 -16.78897 -16.62760 -16.48305 -16.34030 -16.02151 -15.62403 -15.43223 -15.27520 -15.07735 -14.97098 -14.56332 -14.48755 -14.21304 -14.04781 -13.60355 -13.50366 -13.38075 -13.33960 -13.26478 -13.23349 -12.86874 -12.76886 -12.67515 -12.35704 -12.07013 -11.44737 -11.36945 -11.08823 -10.76520 -10.65346 -10.59325 -9.85423 -9.79149 -8.66698 -8.45350 -6.11889 -0.04349 0.53443 0.63369 0.81261 1.16697 1.38995 1.46170 1.56723 1.62240 1.94079 2.14188 2.19863 2.82011 2.88549 3.06491 3.17260 3.50871 3.63934 3.85926 4.04880 4.05349 4.11450 4.20094 4.30676 4.37627 4.49125 4.55403 4.59523 4.63586 4.67322 4.73613 4.84422 5.02424 5.06318 5.07561 5.14162 5.24894 5.38401 5.48098 5.65933 5.69033 5.77120 5.98294 6.03585 6.15420 6.43388 6.75819 6.79744 6.99650 7.79207 8.77757 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001949 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.571150 B =14365.155560 C =15109.643823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.104 3.896 3 H 0.126 0.874 4 C 0.521 3.479 5 O -0.542 6.542 6 N -0.625 5.625 7 C 0.095 3.905 8 C 0.333 3.667 9 N -0.598 5.598 10 C 0.553 3.447 11 O -0.513 6.513 12 C 0.507 3.493 13 O -0.515 6.515 14 N -0.616 5.616 15 C 0.054 3.946 16 C -0.072 4.072 17 C -0.221 4.221 18 C 0.113 3.887 19 O -0.228 6.228 20 C -0.410 4.410 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.920 5.920 24 Si 1.018 2.982 25 H -0.248 1.248 26 H -0.271 1.271 27 H -0.271 1.271 28 C -0.185 4.185 29 C -0.062 4.062 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.430 0.570 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 11.607 -20.267 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.002 4.002 3 H 0.144 0.856 4 C 0.307 3.693 5 O -0.419 6.419 6 N -0.360 5.360 7 C -0.045 4.045 8 C 0.125 3.875 9 N -0.335 5.335 10 C 0.336 3.664 11 O -0.388 6.388 12 C 0.289 3.711 13 O -0.391 6.391 14 N -0.263 5.263 15 C -0.039 4.039 16 C -0.092 4.092 17 C -0.241 4.241 18 C 0.062 3.938 19 O -0.134 6.134 20 C -0.486 4.486 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.558 5.558 24 Si 0.838 3.162 25 H -0.171 1.171 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.205 4.205 29 C -0.082 4.082 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.269 0.731 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.889 11.149 -20.805 24.328 hybrid contribution 0.187 0.138 0.917 0.946 sum -5.702 11.286 -19.888 23.568 Atomic orbital electron populations 1.21920 0.90329 1.03528 1.04730 1.21690 0.98174 0.98137 0.82189 0.85609 1.20491 0.78112 0.81200 0.89453 1.90770 1.60472 1.70386 1.20317 1.48512 1.51541 1.28557 1.07353 1.21838 0.98305 0.91221 0.93094 1.21756 0.98009 0.90000 0.77692 1.47914 1.51367 1.29779 1.04415 1.19270 0.81095 0.84848 0.81153 1.90808 1.38599 1.27822 1.81527 1.19899 0.81568 0.85721 0.83914 1.90791 1.37468 1.28347 1.82480 1.42730 1.55103 1.25297 1.03143 1.17269 1.07640 0.89304 0.89722 1.20822 0.96601 1.00423 0.91350 1.21118 1.08895 0.92257 1.01834 1.19953 0.93586 0.90760 0.89546 1.83962 1.73852 1.35505 1.20055 1.21880 1.42593 0.97186 0.86921 0.87593 1.26586 0.95897 0.95978 1.03698 1.70195 1.42495 1.07613 1.35455 0.84527 0.78250 0.78836 0.74618 1.17096 1.19632 1.19643 1.20260 1.07654 1.00284 0.92330 1.20729 0.97862 0.91428 0.98178 0.90122 0.89310 0.91884 0.90769 0.90361 0.87962 0.87994 0.88082 0.73097 0.82631 0.85104 0.91883 0.86344 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.30 71.98 0.67 -1.44 16 2 C 0.10 1.63 3.61 44.18 0.16 1.79 16 3 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.52 9.48 7.43 87.76 0.65 10.13 16 5 O -0.54 -13.29 17.67 -3.02 -0.05 -13.34 16 6 N -0.62 -8.81 3.33 -859.44 -2.86 -11.67 16 7 C 0.10 0.86 11.01 127.77 1.41 2.27 16 8 C 0.33 4.66 6.17 170.95 1.05 5.72 16 9 N -0.60 -9.77 3.10 -813.80 -2.52 -12.29 16 10 C 0.55 10.59 7.75 87.23 0.68 11.26 16 11 O -0.51 -11.04 15.65 -3.29 -0.05 -11.09 16 12 C 0.51 11.10 7.59 87.23 0.66 11.76 16 13 O -0.52 -12.92 12.02 -3.37 -0.04 -12.96 16 14 N -0.62 -13.61 5.32 -304.75 -1.62 -15.23 16 15 C 0.05 1.57 6.27 38.25 0.24 1.81 16 16 C -0.07 -2.18 9.96 22.39 0.22 -1.96 16 17 C -0.22 -8.73 9.12 22.37 0.20 -8.52 16 18 C 0.11 5.27 6.65 22.60 0.15 5.42 16 19 O -0.23 -13.08 9.75 -22.62 -0.22 -13.30 16 20 C -0.41 -22.71 9.44 67.92 0.64 -22.07 16 21 H 0.11 5.29 5.29 -2.91 -0.02 5.27 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -55.00 13.67 21.61 0.30 -54.71 16 24 Si 1.02 41.21 29.55 68.60 2.03 43.23 16 25 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 26 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 28 C -0.19 -7.56 9.98 22.38 0.22 -7.34 16 29 C -0.06 -2.07 8.65 22.39 0.19 -1.88 16 30 H 0.08 1.26 6.94 -2.39 -0.02 1.24 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.80 7.98 -2.39 -0.02 0.78 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 1.38 7.70 -2.39 -0.02 1.36 16 37 H 0.10 1.36 7.71 -2.39 -0.02 1.34 16 38 H 0.43 7.42 8.30 -92.71 -0.77 6.65 16 39 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.13 5.17 5.71 -2.91 -0.02 5.16 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 42 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.14 4.23 6.44 -2.91 -0.02 4.21 16 Total: -1.00 -73.21 371.01 2.89 -70.32 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.31 Total: 24.94 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 7.62 Total: 6.11 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -6.71 Total: -93.90 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.37 Total: -50.70 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -73.21 2.89 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328235547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.344 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds