Wall clock time and date at job start Wed Apr 1 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46859 * 2 1 4 4 C 1.50695 * 109.47118 * 240.00282 * 2 1 3 5 5 H 1.08001 * 120.00027 * 240.00191 * 4 2 1 6 6 C 1.37881 * 120.00229 * 59.99382 * 4 2 1 7 7 N 1.31511 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99794 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46725 * 90.00491 * 8 6 4 10 10 H 1.48499 * 109.47062 * 210.00137 * 8 6 4 11 11 H 1.48493 * 109.47378 * 330.00527 * 8 6 4 12 12 N 1.46499 * 109.47110 * 119.99767 * 2 1 3 13 13 C 1.46506 * 119.99669 * 60.00302 * 12 2 1 14 14 C 1.34770 * 120.00277 * 240.00114 * 12 2 1 15 15 O 1.21372 * 119.99949 * 354.39072 * 14 12 2 16 16 C 1.49335 * 120.00473 * 174.39526 * 14 12 2 17 17 O 1.21381 * 119.99532 * 0.68368 * 16 14 12 18 18 N 1.34767 * 119.99882 * 180.68215 * 16 14 12 19 19 C 1.39850 * 119.99684 * 185.63116 * 18 16 14 20 20 C 1.38956 * 119.98047 * 209.10138 * 19 18 16 21 21 C 1.38102 * 120.09525 * 179.78373 * 20 19 18 22 22 C 1.38656 * 119.82613 * 0.22899 * 21 20 19 23 23 C 1.39099 * 120.06291 * 359.96905 * 22 21 20 24 24 C 1.37744 * 120.18758 * 0.07583 * 23 22 21 25 25 C 1.50812 * 118.89444 * 180.13446 * 23 22 21 26 26 O 1.45393 * 108.73888 * 331.29507 * 25 23 22 27 27 C 1.34537 * 117.35481 * 45.65068 * 26 25 23 28 28 O 1.21516 * 119.62698 * 145.73401 * 27 26 25 29 29 N 1.34853 * 120.74871 * 325.75696 * 27 26 25 30 30 H 1.09000 * 109.47463 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46993 * 300.00070 * 1 2 3 32 32 H 1.09002 * 109.47291 * 59.99550 * 1 2 3 33 33 H 0.96996 * 120.00200 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46685 * 263.75466 * 13 12 2 35 35 H 1.08991 * 109.47349 * 23.76001 * 13 12 2 36 36 H 1.09003 * 109.46824 * 143.76146 * 13 12 2 37 37 H 0.96996 * 120.00820 * 5.63663 * 18 16 14 38 38 H 1.08002 * 119.94805 * 0.06789 * 20 19 18 39 39 H 1.08000 * 120.08508 * 180.24822 * 21 20 19 40 40 H 1.07997 * 120.10361 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.59107 * 211.51419 * 25 23 22 42 42 H 1.09002 * 109.58943 * 91.07257 * 25 23 22 43 43 H 0.97002 * 120.21241 * 181.39412 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0833 15 8 3.1705 1.0926 1.8427 16 6 3.1875 -0.6979 3.3624 17 8 2.8205 -1.8308 3.5974 18 7 3.9509 -0.0378 4.2555 19 6 4.4182 -0.6960 5.3975 20 6 4.6540 0.0206 6.5644 21 6 5.1112 -0.6277 7.6949 22 6 5.3390 -1.9950 7.6611 23 6 5.1067 -2.7114 6.4916 24 6 4.6516 -2.0662 5.3630 25 6 5.3603 -4.1980 6.4852 26 8 6.4055 -4.4977 7.4504 27 6 6.3141 -3.9176 8.6608 28 8 6.6947 -4.5191 9.6456 29 7 5.8045 -2.6761 8.7936 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.7093 1.1618 -3.4844 34 1 0.8011 -2.1452 2.0914 35 1 1.4216 -2.5685 0.4777 36 1 2.5074 -2.6094 1.8875 37 1 4.1762 0.8937 4.1065 38 1 4.4751 1.0855 6.5887 39 1 5.2906 -0.0711 8.6029 40 1 4.4721 -2.6237 4.4556 41 1 5.6803 -4.5100 5.4910 42 1 4.4469 -4.7258 6.7598 43 1 5.7609 -2.2573 9.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351580495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:14 Heat of formation + Delta-G solvation = -94.082720 kcal Electronic energy + Delta-G solvation = -29904.808836 eV Core-core repulsion = 25530.216134 eV Total energy + Delta-G solvation = -4374.592702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87638 -40.89324 -39.32188 -38.14294 -37.42595 -36.27490 -35.56211 -34.09461 -32.86515 -32.36820 -29.71821 -29.27429 -27.16972 -26.38489 -25.38877 -24.94221 -23.98765 -23.02437 -20.98445 -20.61907 -19.48708 -19.29987 -18.38548 -17.69266 -17.34451 -16.88393 -16.50392 -16.25790 -16.02868 -15.78579 -15.31317 -14.91427 -14.81426 -14.46444 -14.41878 -14.20109 -13.93157 -13.68297 -13.31179 -13.23286 -12.94645 -12.62084 -12.48684 -12.22484 -11.89936 -11.72092 -11.54133 -11.22873 -11.18210 -11.04877 -10.92649 -10.86130 -10.80901 -10.38985 -10.27257 -10.07308 -9.39800 -9.31728 -8.96761 -8.54743 -8.09070 -7.85250 -6.19028 -4.27639 0.54196 0.81566 1.63639 1.99083 2.25423 2.48884 2.99401 3.20482 3.21318 3.28304 3.31116 3.57111 3.76783 3.98368 4.22575 4.30604 4.57983 4.63767 4.71836 4.77327 4.86280 5.00023 5.13027 5.16411 5.38864 5.58509 5.78831 5.82398 5.86529 5.97688 6.11087 6.23180 6.39257 6.50975 6.60233 6.65792 6.85832 6.94138 7.00458 7.14111 7.28584 7.48351 7.57303 7.68312 7.86553 8.00377 8.23365 8.47051 8.76754 9.38841 10.86466 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002201 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.628080 B =12716.754950 C =13407.958786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.550 5.550 13 C 0.078 3.922 14 C 0.492 3.508 15 O -0.534 6.534 16 C 0.509 3.491 17 O -0.499 6.499 18 N -0.650 5.650 19 C 0.140 3.860 20 C -0.107 4.107 21 C -0.122 4.122 22 C 0.137 3.863 23 C -0.151 4.151 24 C -0.076 4.076 25 C 0.117 3.883 26 O -0.343 6.343 27 C 0.662 3.338 28 O -0.511 6.511 29 N -0.666 5.666 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.425 0.575 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -3.514 19.026 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.281 5.281 13 C -0.065 4.065 14 C 0.273 3.727 15 O -0.413 6.413 16 C 0.293 3.707 17 O -0.373 6.373 18 N -0.296 5.296 19 C 0.044 3.956 20 C -0.128 4.128 21 C -0.143 4.143 22 C 0.041 3.959 23 C -0.154 4.154 24 C -0.097 4.097 25 C 0.044 3.956 26 O -0.254 6.254 27 C 0.415 3.585 28 O -0.393 6.393 29 N -0.325 5.325 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.263 0.737 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.901 -4.286 19.055 20.403 hybrid contribution 0.141 0.440 -0.606 0.763 sum 6.042 -3.846 18.449 19.790 Atomic orbital electron populations 1.22110 0.97473 0.99897 1.01082 1.19194 0.91277 0.94575 0.79413 0.91558 1.21252 1.32314 1.13245 0.89956 0.91963 1.24888 0.94802 0.94929 0.99042 1.69863 1.36089 1.22420 1.24030 0.86438 0.79259 0.79288 0.82109 1.20495 1.21028 1.19843 1.48290 1.45294 1.12513 1.21957 1.22012 1.00932 0.81633 1.01885 1.19554 0.82040 0.86721 0.84430 1.90740 1.54532 1.18662 1.77322 1.21013 0.77821 0.86348 0.85496 1.90681 1.52232 1.18027 1.76356 1.43306 1.49845 1.16453 1.20007 1.17707 0.98824 0.92199 0.86890 1.20804 1.00980 1.00683 0.90354 1.20428 1.03221 0.91260 0.99381 1.17614 0.99554 0.92134 0.86615 1.19816 1.05850 0.96007 0.93769 1.20806 0.97103 0.93357 0.98446 1.22263 0.89863 0.91104 0.92410 1.86681 1.49456 1.66701 1.22609 1.18239 0.76880 0.80281 0.83052 1.91058 1.51155 1.63769 1.33346 1.43462 1.62284 1.16137 1.10634 0.94752 0.96850 0.88425 0.92500 0.93268 0.90273 0.90364 0.73661 0.84283 0.84376 0.82909 0.85159 0.88895 0.73162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.25 6.13 2.62 -69.08 -0.18 5.95 16 3 H 0.07 1.82 6.91 -51.92 -0.36 1.46 16 4 C -0.53 -13.60 7.95 -34.44 -0.27 -13.88 16 5 H 0.06 1.58 7.44 -52.49 -0.39 1.19 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.55 -11.21 2.75 -175.81 -0.48 -11.69 16 13 C 0.08 1.35 8.20 59.85 0.49 1.84 16 14 C 0.49 9.34 7.72 -11.64 -0.09 9.25 16 15 O -0.53 -11.36 15.83 5.48 0.09 -11.28 16 16 C 0.51 7.60 7.53 -11.64 -0.09 7.51 16 17 O -0.50 -7.53 10.69 5.47 0.06 -7.47 16 18 N -0.65 -7.55 5.34 -10.24 -0.05 -7.61 16 19 C 0.14 1.41 6.36 -83.64 -0.53 0.88 16 20 C -0.11 -0.81 9.94 -39.37 -0.39 -1.20 16 21 C -0.12 -0.82 9.96 -39.48 -0.39 -1.21 16 22 C 0.14 1.13 6.58 -83.60 -0.55 0.58 16 23 C -0.15 -1.37 5.81 -104.43 -0.61 -1.97 16 24 C -0.08 -0.78 8.38 -39.47 -0.33 -1.11 16 25 C 0.12 0.93 7.19 36.06 0.26 1.19 16 26 O -0.34 -3.71 10.50 -40.07 -0.42 -4.13 16 27 C 0.66 7.41 8.59 54.09 0.46 7.87 16 28 O -0.51 -7.28 18.02 -19.32 -0.35 -7.63 16 29 N -0.67 -5.35 5.44 -14.23 -0.08 -5.43 16 30 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 35 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 36 H 0.08 1.24 5.84 -51.93 -0.30 0.94 16 37 H 0.42 4.39 8.28 -40.82 -0.34 4.05 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.15 1.67 6.13 -52.49 -0.32 1.35 16 41 H 0.13 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.43 2.37 8.87 -40.82 -0.36 2.01 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -31.85 363.15 -6.97 -38.82 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.83 Total: 4.67 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -1.98 Total: 14.34 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.01 Total: -48.01 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.62 Total: -30.51 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.85 -6.97 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351580495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.262 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds