Wall clock time and date at job start Wed Apr 1 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47131 * 2 1 4 4 C 1.50708 * 109.47376 * 119.99535 * 2 1 3 5 5 H 1.07996 * 119.99722 * 94.34820 * 4 2 1 6 6 C 1.37870 * 120.00266 * 274.35131 * 4 2 1 7 7 N 1.31509 * 120.00444 * 174.64489 * 6 4 2 8 8 Si 1.86808 * 119.99932 * 354.64979 * 6 4 2 9 9 H 1.48504 * 109.46669 * 275.13703 * 8 6 4 10 10 H 1.48498 * 109.47137 * 35.13545 * 8 6 4 11 11 H 1.48498 * 109.47266 * 155.14095 * 8 6 4 12 12 N 1.46502 * 109.47372 * 239.99977 * 2 1 3 13 13 C 1.46503 * 119.99528 * 300.00033 * 12 2 1 14 14 C 1.34775 * 120.00276 * 119.99709 * 12 2 1 15 15 O 1.21357 * 119.99781 * 5.52213 * 14 12 2 16 16 C 1.49333 * 119.99672 * 185.52362 * 14 12 2 17 17 O 1.21385 * 120.00015 * 5.61342 * 16 14 12 18 18 N 1.34779 * 119.99705 * 185.61632 * 16 14 12 19 19 C 1.39842 * 120.00069 * 184.69813 * 18 16 14 20 20 C 1.38961 * 119.97715 * 144.17878 * 19 18 16 21 21 C 1.38095 * 120.09340 * 180.02562 * 20 19 18 22 22 C 1.38662 * 119.83022 * 359.96995 * 21 20 19 23 23 C 1.39096 * 120.05627 * 359.96664 * 22 21 20 24 24 C 1.37744 * 120.19170 * 359.82876 * 23 22 21 25 25 C 1.50819 * 118.89230 * 180.13650 * 23 22 21 26 26 O 1.45389 * 108.73726 * 331.29589 * 25 23 22 27 27 C 1.34543 * 117.35884 * 45.65042 * 26 25 23 28 28 O 1.21517 * 119.62780 * 145.73360 * 27 26 25 29 29 N 1.34850 * 120.74303 * 325.75780 * 27 26 25 30 30 H 1.08998 * 109.47012 * 175.14124 * 1 2 3 31 31 H 1.09006 * 109.46652 * 295.13475 * 1 2 3 32 32 H 1.08994 * 109.47060 * 55.13731 * 1 2 3 33 33 H 0.97004 * 120.00695 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47142 * 95.53180 * 13 12 2 35 35 H 1.08996 * 109.47082 * 215.53641 * 13 12 2 36 36 H 1.09003 * 109.47340 * 335.53383 * 13 12 2 37 37 H 0.97000 * 119.99849 * 4.70326 * 18 16 14 38 38 H 1.08003 * 119.94994 * 0.04114 * 20 19 18 39 39 H 1.08003 * 120.08273 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.10649 * 180.20146 * 24 23 22 41 41 H 1.08997 * 109.59219 * 211.51577 * 25 23 22 42 42 H 1.09003 * 109.59310 * 91.07232 * 25 23 22 43 43 H 0.97002 * 120.21495 * 181.39877 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.2793 -1.7607 1.1847 6 6 2.1768 -0.0193 2.4148 7 7 2.5137 -0.6596 3.5130 8 14 1.8938 1.8267 2.4595 9 1 3.1402 2.5283 2.0598 10 1 0.8017 2.1830 1.5186 11 1 1.5149 2.2362 3.8357 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0834 15 8 3.1691 1.0930 -1.8435 16 6 3.1890 -0.6989 -3.3615 17 8 2.7314 -1.7860 -3.6482 18 7 4.0544 -0.0903 -4.1965 19 6 4.3496 -0.6640 -5.4372 20 6 4.5682 0.1481 -6.5434 21 6 4.8594 -0.4159 -7.7698 22 6 4.9336 -1.7948 -7.8947 23 6 4.7160 -2.6074 -6.7869 24 6 4.4296 -2.0464 -5.5619 25 6 4.8063 -4.1038 -6.9518 26 8 4.4449 -4.4458 -8.3179 27 6 4.9860 -3.7074 -9.3039 28 8 5.2623 -4.2319 -10.3647 29 7 5.2255 -2.3921 -9.1281 30 1 -0.3633 -1.0240 -0.0870 31 1 -0.3633 0.4365 0.9304 32 1 -0.3633 0.5874 -0.8432 33 1 2.6157 -0.1734 4.3461 34 1 0.7934 -2.1450 -2.0812 35 1 2.5028 -2.6065 -1.8987 36 1 1.4336 -2.5718 -0.4761 37 1 4.4725 0.7455 -3.9369 38 1 4.5106 1.2220 -6.4436 39 1 5.0289 0.2155 -8.6295 40 1 4.2641 -2.6785 -4.7020 41 1 4.1192 -4.5900 -6.2592 42 1 5.8257 -4.4329 -6.7500 43 1 5.5971 -1.8626 -9.8510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351580499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:17 Heat of formation + Delta-G solvation = -93.275036 kcal Electronic energy + Delta-G solvation = -29981.393474 eV Core-core repulsion = 25606.835796 eV Total energy + Delta-G solvation = -4374.557678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89364 -40.91787 -39.38628 -38.22132 -37.44308 -36.32604 -35.65966 -34.10862 -32.74320 -32.39175 -30.50120 -29.38223 -27.17977 -26.48159 -25.46377 -24.98233 -23.98909 -23.06685 -20.99543 -20.60919 -19.48990 -19.26267 -18.40176 -17.78357 -17.42463 -16.98407 -16.94332 -16.30306 -16.17824 -15.74810 -15.36497 -15.00447 -14.88388 -14.46618 -14.36804 -14.17506 -13.94264 -13.54774 -13.42668 -13.29358 -13.01587 -12.71018 -12.49678 -12.42263 -12.15022 -12.03329 -11.63947 -11.59969 -11.23183 -11.21959 -10.99335 -10.95942 -10.81567 -10.53591 -10.08151 -9.90469 -9.44474 -9.41194 -9.08071 -8.71445 -8.16494 -7.96475 -6.26906 -4.30022 0.51963 0.79545 1.58573 1.95175 2.23590 2.44079 2.97917 3.17212 3.21782 3.28999 3.33515 3.48122 3.70672 3.94006 4.21146 4.27351 4.53874 4.56644 4.70183 4.75604 4.84022 4.97674 5.09409 5.15997 5.37388 5.56327 5.76334 5.81430 5.82296 5.92286 6.04351 6.11118 6.20885 6.28534 6.35897 6.41898 6.49748 6.74494 6.79260 6.97036 6.98692 7.17486 7.43867 7.46388 7.61404 7.89553 8.25345 8.43243 8.74367 9.33215 10.84748 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.002249 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.200905 B =12449.505488 C =13019.388239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.286 1.286 12 N -0.546 5.546 13 C 0.080 3.920 14 C 0.494 3.506 15 O -0.537 6.537 16 C 0.511 3.489 17 O -0.498 6.498 18 N -0.651 5.651 19 C 0.133 3.867 20 C -0.101 4.101 21 C -0.125 4.125 22 C 0.142 3.858 23 C -0.155 4.155 24 C -0.070 4.070 25 C 0.117 3.883 26 O -0.341 6.341 27 C 0.662 3.338 28 O -0.510 6.510 29 N -0.667 5.667 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.268 0.732 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.425 0.575 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -0.225 -20.923 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 H 0.082 0.918 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.276 5.276 13 C -0.062 4.062 14 C 0.275 3.725 15 O -0.416 6.416 16 C 0.294 3.706 17 O -0.372 6.372 18 N -0.299 5.299 19 C 0.038 3.962 20 C -0.122 4.122 21 C -0.146 4.146 22 C 0.046 3.954 23 C -0.158 4.158 24 C -0.090 4.090 25 C 0.043 3.957 26 O -0.253 6.253 27 C 0.415 3.585 28 O -0.393 6.393 29 N -0.326 5.326 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.150 0.850 42 H 0.110 0.890 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.783 -1.094 -21.137 21.699 hybrid contribution 0.254 1.828 0.139 1.850 sum 5.037 0.733 -20.997 21.605 Atomic orbital electron populations 1.22302 0.97694 1.00786 1.00086 1.19472 0.91116 0.94814 0.82232 0.91825 1.21055 1.45693 0.98339 0.91777 0.90060 1.24892 0.93788 0.98341 0.95283 1.69873 1.46481 1.36335 0.99717 0.86976 0.79857 0.85968 0.77454 1.19609 1.18527 1.21159 1.48191 1.45674 1.12549 1.21216 1.21997 1.00985 0.81221 1.02027 1.19617 0.81858 0.86684 0.84339 1.90726 1.54857 1.18855 1.77130 1.20873 0.78521 0.85487 0.85678 1.90707 1.52870 1.19353 1.74276 1.43245 1.43839 1.27589 1.15182 1.17673 1.01031 0.92127 0.85350 1.20881 1.00593 1.00306 0.90444 1.20446 1.04075 0.91813 0.98312 1.17637 1.00564 0.92683 0.84539 1.19843 1.07259 0.95434 0.93282 1.20844 0.97007 0.93989 0.97183 1.22270 1.03421 0.91094 0.78889 1.86690 1.67196 1.54920 1.16520 1.18251 0.75587 0.80394 0.84231 1.91060 1.51645 1.71613 1.24939 1.43478 1.64865 1.09411 1.14799 0.92885 0.91886 0.95408 0.92213 0.92961 0.90506 0.90070 0.73699 0.84279 0.84365 0.82922 0.85004 0.89015 0.73140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.91 37.16 0.33 -2.67 16 2 C 0.22 5.06 2.18 -69.08 -0.15 4.91 16 3 H 0.06 1.55 4.63 -51.93 -0.24 1.31 16 4 C -0.53 -13.83 8.66 -34.44 -0.30 -14.13 16 5 H 0.08 2.26 6.98 -52.49 -0.37 1.90 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 8 Si 0.87 20.63 26.23 -169.99 -4.46 16.17 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.26 -5.86 6.20 56.52 0.35 -5.50 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.55 -10.77 2.75 -175.81 -0.48 -11.25 16 13 C 0.08 1.35 8.10 59.85 0.48 1.83 16 14 C 0.49 9.12 7.72 -11.64 -0.09 9.03 16 15 O -0.54 -11.03 15.84 5.49 0.09 -10.94 16 16 C 0.51 7.48 7.54 -11.64 -0.09 7.39 16 17 O -0.50 -7.44 10.87 5.47 0.06 -7.38 16 18 N -0.65 -7.38 5.31 -10.24 -0.05 -7.44 16 19 C 0.13 1.31 6.28 -83.64 -0.53 0.79 16 20 C -0.10 -0.75 9.96 -39.37 -0.39 -1.14 16 21 C -0.13 -0.82 9.96 -39.48 -0.39 -1.21 16 22 C 0.14 1.14 6.58 -83.60 -0.55 0.59 16 23 C -0.15 -1.36 5.81 -104.43 -0.61 -1.96 16 24 C -0.07 -0.69 8.39 -39.47 -0.33 -1.02 16 25 C 0.12 0.90 7.19 36.06 0.26 1.16 16 26 O -0.34 -3.69 10.50 -40.08 -0.42 -4.11 16 27 C 0.66 7.33 8.59 54.09 0.46 7.80 16 28 O -0.51 -7.22 18.02 -19.32 -0.35 -7.56 16 29 N -0.67 -5.24 5.44 -14.23 -0.08 -5.32 16 30 H 0.05 0.98 7.51 -51.93 -0.39 0.59 16 31 H 0.06 1.29 6.84 -51.93 -0.35 0.93 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.08 1.21 5.97 -51.93 -0.31 0.90 16 36 H 0.08 1.43 6.71 -51.93 -0.35 1.08 16 37 H 0.42 4.25 8.32 -40.82 -0.34 3.92 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.15 1.60 6.30 -52.49 -0.33 1.27 16 41 H 0.13 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.43 2.28 8.87 -40.82 -0.36 1.92 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.25 359.73 -6.25 -39.50 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.76 Total: 4.23 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -1.98 Total: 13.48 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.16 Total: -48.80 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.62 Total: -30.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.46 Total: 16.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.25 -6.25 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351580499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.776 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds