Wall clock time and date at job start Wed Apr 1 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.50700 * 109.46968 * 240.00052 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00047 * 4 2 1 6 6 C 1.37876 * 120.00258 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99755 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00034 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46875 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47081 * 120.00328 * 8 6 4 11 11 H 1.48503 * 109.46982 * 240.00216 * 8 6 4 12 12 N 1.46499 * 109.47126 * 119.99811 * 2 1 3 13 13 C 1.46502 * 119.99644 * 59.99879 * 12 2 1 14 14 S 1.65598 * 119.99847 * 240.00002 * 12 2 1 15 15 O 1.42107 * 106.40054 * 156.46133 * 14 12 2 16 16 O 1.42098 * 106.40446 * 23.53856 * 14 12 2 17 17 N 1.65601 * 107.21727 * 269.99487 * 14 12 2 18 18 C 1.47670 * 134.44762 * 90.00568 * 17 14 12 19 19 C 1.53475 * 85.98202 * 155.66758 * 18 17 14 20 20 C 1.47657 * 134.46379 * 269.97363 * 17 14 12 21 21 C 1.52820 * 113.55792 * 137.63295 * 19 18 17 22 22 C 1.53486 * 108.02383 * 176.79713 * 21 19 18 23 23 H 1.08997 * 109.56334 * 54.95798 * 22 21 19 24 24 O 1.42901 * 109.55688 * 175.28833 * 22 21 19 25 25 C 1.52797 * 108.94104 * 295.12118 * 22 21 19 26 26 N 1.45678 * 111.10023 * 52.53859 * 25 22 21 27 27 C 1.33711 * 123.83035 * 338.25344 * 26 25 22 28 28 O 1.21277 * 118.95174 * 182.49182 * 27 26 25 29 29 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46902 * 300.00351 * 1 2 3 31 31 H 1.09000 * 109.46951 * 59.99733 * 1 2 3 32 32 H 0.97001 * 119.99749 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47309 * 269.99743 * 13 12 2 34 34 H 1.08990 * 109.47485 * 30.00157 * 13 12 2 35 35 H 1.09000 * 109.46486 * 150.00372 * 13 12 2 36 36 H 1.08997 * 113.79680 * 41.40283 * 18 17 14 37 37 H 1.09003 * 113.89647 * 269.93882 * 18 17 14 38 38 H 1.09000 * 113.79410 * 90.06130 * 20 17 14 39 39 H 1.08999 * 113.78845 * 318.59752 * 20 17 14 40 40 H 1.08997 * 109.74862 * 57.16235 * 21 19 18 41 41 H 1.08993 * 109.79068 * 296.45143 * 21 19 18 42 42 H 0.96697 * 113.99947 * 179.46004 * 24 22 21 43 43 H 1.09002 * 109.14373 * 172.93988 * 25 22 21 44 44 H 1.09002 * 109.14404 * 292.13608 * 25 22 21 45 45 H 0.97001 * 118.11120 * 158.32089 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1143 2.2862 15 8 2.8228 -0.5645 3.5259 16 8 2.6904 1.4974 2.1192 17 7 4.5438 -0.1042 1.8180 18 6 5.4705 0.6289 0.9324 19 6 6.5948 -0.0150 1.7551 20 6 5.5823 -1.1097 2.1191 21 6 7.7603 -0.5207 0.9059 22 6 8.8390 -1.0620 1.8541 23 1 8.4033 -1.8152 2.5106 24 8 9.8981 -1.6439 1.0914 25 6 9.3868 0.0920 2.6925 26 7 8.3094 0.8234 3.3456 27 6 7.0401 0.8117 2.9252 28 8 6.2219 1.4900 3.5094 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1617 -3.4844 33 1 0.7375 -2.1443 1.9994 34 1 1.5295 -2.5968 0.4709 35 1 2.4628 -2.5818 1.9864 36 1 5.4142 1.7124 1.0371 37 1 5.4419 0.2997 -0.1063 38 1 5.5857 -1.9573 1.4338 39 1 5.6149 -1.4079 3.1670 40 1 8.1677 0.2990 0.3140 41 1 7.4174 -1.3169 0.2453 42 1 10.6197 -1.9995 1.6279 43 1 10.0602 -0.3059 3.4517 44 1 9.9400 0.7728 2.0455 45 1 8.5251 1.3505 4.1307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364926871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:51 Heat of formation + Delta-G solvation = -114.211990 kcal Electronic energy + Delta-G solvation = -30809.051674 eV Core-core repulsion = 26569.030053 eV Total energy + Delta-G solvation = -4240.021621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36534 -38.11129 -37.82089 -36.53148 -36.07639 -35.23844 -35.09250 -32.58079 -31.75948 -29.05404 -28.77661 -26.34510 -25.81702 -25.37642 -25.16802 -23.44282 -22.04846 -20.66608 -18.62263 -18.35988 -18.05884 -17.28671 -17.18480 -16.64381 -16.44089 -16.16383 -15.71187 -15.25050 -15.06400 -14.78262 -14.41386 -14.18078 -13.74786 -13.66917 -13.47465 -13.22023 -13.16480 -12.67241 -12.47935 -12.37343 -12.18017 -11.92692 -11.72324 -11.52193 -11.41030 -11.32227 -11.17770 -10.94697 -10.86761 -10.81821 -10.65040 -10.54069 -10.39140 -10.19598 -10.06920 -9.93710 -9.35559 -9.29861 -8.78184 -8.48460 -7.90695 -6.09042 -4.17819 1.25471 2.38799 2.89169 3.22553 3.30872 3.32639 3.40223 3.61967 4.09574 4.12973 4.24064 4.35197 4.37198 4.53958 4.58480 4.76857 4.81319 4.91896 5.12809 5.21171 5.25616 5.39694 5.54030 5.60831 5.67924 5.74995 5.80315 5.95708 6.18280 6.20760 6.34748 6.51489 6.59821 6.71212 6.91531 6.93457 6.98331 7.15211 7.15415 7.53560 7.64107 7.80167 8.04151 8.06880 8.27433 8.85569 9.48357 10.95989 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.004308 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.174875 B = 6497.629084 C = 7912.944505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.994 5.994 13 C 0.108 3.892 14 S 2.798 3.202 15 O -0.993 6.993 16 O -0.970 6.970 17 N -1.030 6.030 18 C 0.163 3.837 19 C -0.120 4.120 20 C 0.153 3.847 21 C -0.103 4.103 22 C 0.092 3.908 23 H 0.069 0.931 24 O -0.554 6.554 25 C 0.080 3.920 26 N -0.721 5.721 27 C 0.540 3.460 28 O -0.520 6.520 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.092 0.908 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.380 0.620 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.649 -5.921 7.763 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.836 5.836 13 C -0.038 4.038 14 S 2.810 3.190 15 O -0.978 6.978 16 O -0.955 6.955 17 N -0.868 5.868 18 C 0.037 3.963 19 C -0.126 4.126 20 C 0.026 3.974 21 C -0.142 4.142 22 C 0.032 3.968 23 H 0.087 0.913 24 O -0.359 6.359 25 C -0.045 4.045 26 N -0.376 5.376 27 C 0.326 3.674 28 O -0.394 6.394 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.228 0.772 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 17.131 -4.861 8.065 19.548 hybrid contribution 0.944 -0.707 -0.470 1.270 sum 18.075 -5.568 7.594 20.381 Atomic orbital electron populations 1.22051 0.98013 0.99607 1.00742 1.18731 0.91891 0.92763 0.80310 0.92426 1.21406 1.31822 1.13034 0.90132 0.91896 1.24935 0.94994 0.94971 0.98966 1.69900 1.36236 1.22582 1.23667 0.86490 0.78637 0.79555 0.82943 1.19827 1.21035 1.20973 1.57915 1.64228 1.21393 1.40032 1.21148 0.98837 0.82196 1.01666 1.01391 0.71293 0.73379 0.72931 1.93517 1.85643 1.76569 1.42022 1.93571 1.83137 1.32041 1.86708 1.60771 1.27754 1.37396 1.60891 1.22485 0.81496 0.98346 0.94021 1.22343 0.95680 0.98752 0.95798 1.22525 0.82193 0.90906 1.01809 1.21666 0.92650 1.02482 0.97392 1.21998 0.88394 0.93412 0.92946 0.91337 1.86604 1.33305 1.79084 1.36877 1.22055 0.89814 0.95205 0.97413 1.45339 1.07816 1.51425 1.33014 1.19374 0.81676 0.81742 0.84608 1.90822 1.51000 1.41414 1.56194 0.94910 0.96920 0.88919 0.92700 0.93984 0.90267 0.93443 0.89210 0.87934 0.88524 0.89993 0.89584 0.88619 0.77245 0.90416 0.90789 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.97 37.16 0.33 -3.21 16 2 C 0.27 6.66 2.62 -69.08 -0.18 6.48 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 4 C -0.52 -13.36 7.99 -34.44 -0.28 -13.64 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.99 -21.68 3.12 -115.85 -0.36 -22.04 16 13 C 0.11 2.01 9.28 59.85 0.56 2.56 16 14 S 2.80 61.19 6.60 -107.50 -0.71 60.48 16 15 O -0.99 -22.63 17.18 -57.17 -0.98 -23.62 16 16 O -0.97 -24.66 16.67 -57.17 -0.95 -25.61 16 17 N -1.03 -18.19 3.75 -120.65 -0.45 -18.64 16 18 C 0.16 2.48 7.83 -3.16 -0.02 2.45 16 19 C -0.12 -1.44 0.99 -155.67 -0.15 -1.59 16 20 C 0.15 1.98 8.08 -3.16 -0.03 1.95 16 21 C -0.10 -0.90 4.89 -26.57 -0.13 -1.03 16 22 C 0.09 0.60 3.55 -26.58 -0.09 0.51 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 O -0.55 -3.44 13.33 -35.23 -0.47 -3.91 16 25 C 0.08 0.45 6.74 -4.59 -0.03 0.42 16 26 N -0.72 -6.35 5.47 -61.47 -0.34 -6.68 16 27 C 0.54 7.13 7.03 -11.78 -0.08 7.05 16 28 O -0.52 -9.47 16.88 5.56 0.09 -9.38 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 35 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 36 H 0.09 1.47 7.97 -51.93 -0.41 1.06 16 37 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 38 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 39 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.82 7.86 -51.93 -0.41 0.41 16 42 H 0.38 0.64 9.08 45.56 0.41 1.05 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.40 3.10 8.83 -40.82 -0.36 2.74 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -36.77 376.22 -9.01 -45.78 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.92 Total: 3.10 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.20 Total: 3.52 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -0.52 Total: -71.07 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -2.31 Total: -62.52 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 61.19 SS G_CDS: -0.71 Total: 60.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.77 -9.01 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364926871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.427 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds