Wall clock time and date at job start Wed Apr 1 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46878 * 2 1 4 4 C 1.50702 * 109.46886 * 119.99591 * 2 1 3 5 5 H 1.07998 * 119.99813 * 114.62949 * 4 2 1 6 6 C 1.37880 * 119.99966 * 294.90358 * 4 2 1 7 7 N 1.31512 * 120.00124 * 359.72524 * 6 4 2 8 8 Si 1.86804 * 119.99763 * 179.72827 * 6 4 2 9 9 H 1.48500 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46913 * 120.00142 * 8 6 4 11 11 H 1.48501 * 109.46596 * 239.99601 * 8 6 4 12 12 N 1.46496 * 109.47072 * 239.99516 * 2 1 3 13 13 C 1.46496 * 120.00281 * 304.97863 * 12 2 1 14 14 S 1.65598 * 119.99681 * 124.97991 * 12 2 1 15 15 O 1.42105 * 106.40251 * 208.49566 * 14 12 2 16 16 O 1.42102 * 106.40564 * 341.41845 * 14 12 2 17 17 N 1.65601 * 107.21768 * 94.96025 * 14 12 2 18 18 C 1.47172 * 136.00149 * 84.63767 * 17 14 12 19 19 C 1.53212 * 87.74280 * 153.40001 * 18 17 14 20 20 C 1.47168 * 135.99673 * 265.00131 * 17 14 12 21 21 C 1.52710 * 113.90669 * 139.47272 * 19 18 17 22 22 C 1.53497 * 108.04069 * 178.12101 * 21 19 18 23 23 H 1.09001 * 109.56277 * 55.18953 * 22 21 19 24 24 O 1.42899 * 109.55450 * 175.51221 * 22 21 19 25 25 C 1.52796 * 108.94935 * 295.34741 * 22 21 19 26 26 N 1.45677 * 111.18416 * 52.60785 * 25 22 21 27 27 C 1.33827 * 123.71712 * 338.12116 * 26 25 22 28 28 O 1.21283 * 118.95650 * 182.49881 * 27 26 25 29 29 H 1.08996 * 109.47161 * 60.00417 * 1 2 3 30 30 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47324 * 300.00469 * 1 2 3 32 32 H 0.96994 * 120.00048 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.47122 * 90.00090 * 13 12 2 34 34 H 1.08998 * 109.47207 * 210.00249 * 13 12 2 35 35 H 1.09003 * 109.47034 * 330.00014 * 13 12 2 36 36 H 1.09001 * 113.48570 * 268.09494 * 18 17 14 37 37 H 1.09002 * 113.48659 * 38.59489 * 18 17 14 38 38 H 1.09004 * 113.49172 * 321.39133 * 20 17 14 39 39 H 1.08999 * 113.49065 * 91.84280 * 20 17 14 40 40 H 1.09000 * 109.74518 * 297.76324 * 21 19 18 41 41 H 1.08997 * 109.75155 * 58.49917 * 21 19 18 42 42 H 0.96709 * 113.99478 * 179.46798 * 24 22 21 43 43 H 1.08999 * 109.14016 * 292.16663 * 25 22 21 44 44 H 1.09003 * 109.13762 * 173.04623 * 25 22 21 45 45 H 0.97000 * 118.14414 * 158.14294 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5798 -1.6362 1.1339 6 6 1.7880 -0.1811 2.4801 7 7 1.1214 0.9464 2.5978 8 14 2.4041 -1.0656 4.0057 9 1 3.1198 -2.3035 3.6051 10 1 3.3304 -0.1773 4.7526 11 1 1.2511 -1.4192 4.8722 12 7 2.0184 -0.6907 -1.1961 13 6 1.5768 -2.0575 -1.4843 14 16 3.0695 0.0736 -2.2223 15 8 2.8439 -0.4785 -3.5121 16 8 2.9648 1.4629 -1.9425 17 7 4.6005 -0.3782 -1.7816 18 6 5.4939 -1.5118 -2.0693 19 6 6.6736 -0.5733 -1.7953 20 6 5.6622 0.1747 -0.9254 21 6 7.8105 -1.2217 -1.0087 22 6 8.9321 -0.1854 -0.8526 23 1 8.5324 0.7184 -0.3927 24 8 9.9699 -0.7239 -0.0311 25 6 9.4944 0.1490 -2.2334 26 7 8.4335 0.5335 -3.1548 27 6 7.1488 0.1964 -2.9908 28 8 6.3432 0.5244 -3.8361 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.9498 1.3189 3.4767 33 1 0.6734 -2.0266 -2.0935 34 1 2.3617 -2.5865 -2.0248 35 1 1.3668 -2.5763 -0.5489 36 1 5.4094 -2.3252 -1.3486 37 1 5.4408 -1.8555 -3.1023 38 1 5.7518 1.2591 -0.9899 39 1 5.6223 -0.1847 0.1028 40 1 7.4513 -1.5266 -0.0258 41 1 8.1848 -2.0903 -1.5505 42 1 10.7164 -0.1239 0.1033 43 1 10.0125 -0.7244 -2.6294 44 1 10.2030 0.9721 -2.1409 45 1 8.6719 1.0636 -3.9314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364926873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:01 Heat of formation + Delta-G solvation = -112.364706 kcal Electronic energy + Delta-G solvation = -30828.487441 eV Core-core repulsion = 26588.545924 eV Total energy + Delta-G solvation = -4239.941517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42360 -38.19336 -37.83608 -36.51506 -36.08046 -35.21549 -35.08576 -32.56814 -31.80006 -29.10693 -28.77808 -26.15358 -25.82857 -25.50367 -25.10341 -23.48827 -22.08453 -20.65521 -18.65009 -18.34319 -18.02948 -17.25289 -17.19937 -16.63005 -16.42872 -16.21175 -15.63718 -15.33442 -14.97352 -14.78358 -14.41124 -14.17304 -13.79946 -13.70718 -13.44002 -13.27052 -13.16049 -12.67505 -12.47344 -12.36528 -12.14313 -11.95621 -11.72638 -11.49558 -11.38327 -11.33369 -11.17199 -10.99134 -10.86266 -10.80700 -10.66176 -10.45725 -10.39413 -10.26271 -10.06294 -9.94224 -9.33960 -9.33005 -8.79195 -8.48951 -7.92161 -6.10080 -4.17829 1.25432 2.39003 2.90317 3.21920 3.30520 3.32238 3.43877 3.64254 4.06675 4.15767 4.27238 4.35329 4.38919 4.54934 4.60847 4.78223 4.83798 4.92974 5.14332 5.21390 5.26615 5.49853 5.58013 5.62519 5.64906 5.70071 5.75854 5.89770 6.16312 6.18545 6.33382 6.52098 6.60300 6.69114 6.86047 6.87682 6.99564 7.12896 7.18034 7.49920 7.62427 7.80578 8.00632 8.05287 8.25367 8.86068 9.48085 10.96233 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.004526 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.109065 B = 6184.846238 C = 7872.297454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.262 3.738 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.993 5.993 13 C 0.108 3.892 14 S 2.805 3.195 15 O -0.986 6.986 16 O -0.973 6.973 17 N -1.033 6.033 18 C 0.158 3.842 19 C -0.128 4.128 20 C 0.159 3.841 21 C -0.099 4.099 22 C 0.091 3.909 23 H 0.071 0.929 24 O -0.555 6.555 25 C 0.081 3.919 26 N -0.721 5.721 27 C 0.543 3.457 28 O -0.520 6.520 29 H 0.014 0.986 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.381 0.619 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.147 -4.433 -5.622 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.836 5.836 13 C -0.039 4.039 14 S 2.817 3.183 15 O -0.970 6.970 16 O -0.958 6.958 17 N -0.870 5.870 18 C 0.031 3.969 19 C -0.134 4.134 20 C 0.032 3.968 21 C -0.138 4.138 22 C 0.032 3.968 23 H 0.089 0.911 24 O -0.359 6.359 25 C -0.044 4.044 26 N -0.376 5.376 27 C 0.329 3.671 28 O -0.395 6.395 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.228 0.772 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 16.680 -4.112 -6.512 18.372 hybrid contribution 0.946 0.009 1.008 1.382 sum 17.626 -4.102 -5.504 18.916 Atomic orbital electron populations 1.21994 0.98052 0.99560 1.00323 1.18789 0.91760 0.93285 0.80250 0.91715 1.21420 1.35826 1.08864 0.90363 0.91946 1.24945 0.95070 0.94903 0.98951 1.69926 1.39771 1.18825 1.23869 0.86512 0.78618 0.79629 0.83011 1.19797 1.20986 1.21014 1.57924 1.59589 1.24799 1.41241 1.21149 0.98471 0.83110 1.01139 1.01222 0.70976 0.73252 0.72887 1.93537 1.84470 1.80684 1.38347 1.93558 1.85522 1.30900 1.85780 1.60692 1.30565 1.34217 1.61537 1.22224 0.83074 0.89221 1.02362 1.22082 0.95540 0.99856 0.95910 1.22275 0.80927 0.99352 0.94231 1.21571 0.92506 0.97771 1.01932 1.21999 0.88586 0.97364 0.88896 0.91099 1.86588 1.32517 1.46196 1.70622 1.22047 0.90111 1.01322 0.90967 1.45342 1.07044 1.56910 1.28301 1.19278 0.81699 0.79383 0.86756 1.90822 1.52413 1.53332 1.42891 0.96725 0.94725 0.89788 0.92701 0.93856 0.93475 0.90427 0.88708 0.89732 0.90170 0.87912 0.88586 0.89764 0.77171 0.90888 0.90390 0.76120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.94 37.16 0.33 -3.03 16 2 C 0.26 6.56 2.57 -69.08 -0.18 6.38 16 3 H 0.07 1.83 6.73 -51.93 -0.35 1.48 16 4 C -0.53 -13.42 8.08 -34.44 -0.28 -13.70 16 5 H 0.06 1.54 7.49 -52.49 -0.39 1.15 16 6 C 0.06 1.68 5.32 -17.82 -0.09 1.58 16 7 N -0.89 -24.44 11.72 55.43 0.65 -23.79 16 8 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.99 -21.69 3.12 -115.85 -0.36 -22.05 16 13 C 0.11 1.99 9.12 59.84 0.55 2.53 16 14 S 2.81 61.82 6.63 -107.50 -0.71 61.11 16 15 O -0.99 -23.02 17.39 -57.17 -0.99 -24.01 16 16 O -0.97 -24.66 16.53 -57.17 -0.94 -25.61 16 17 N -1.03 -18.38 3.78 -124.93 -0.47 -18.85 16 18 C 0.16 2.13 7.63 -8.06 -0.06 2.07 16 19 C -0.13 -1.53 1.09 -156.11 -0.17 -1.70 16 20 C 0.16 2.33 7.85 -8.20 -0.06 2.27 16 21 C -0.10 -0.86 4.94 -26.62 -0.13 -0.99 16 22 C 0.09 0.64 3.55 -26.58 -0.09 0.55 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 O -0.55 -3.67 13.33 -35.23 -0.47 -4.14 16 25 C 0.08 0.47 6.73 -4.59 -0.03 0.44 16 26 N -0.72 -6.49 5.47 -61.48 -0.34 -6.82 16 27 C 0.54 7.23 7.11 -11.78 -0.08 7.14 16 28 O -0.52 -9.49 16.87 5.55 0.09 -9.40 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.03 0.77 7.56 -51.93 -0.39 0.37 16 31 H 0.08 2.18 6.50 -51.93 -0.34 1.84 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.08 1.41 7.29 -51.93 -0.38 1.03 16 36 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 38 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.10 1.37 7.89 -51.93 -0.41 0.96 16 40 H 0.10 0.82 7.85 -51.93 -0.41 0.42 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.38 0.84 9.08 45.56 0.41 1.26 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.40 3.18 8.83 -40.82 -0.36 2.82 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -36.94 377.20 -9.15 -46.09 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.96 Total: 3.19 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.31 Total: 3.55 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -0.52 Total: -71.52 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -2.32 Total: -63.15 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 61.82 SS G_CDS: -0.71 Total: 61.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.94 -9.15 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364926873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.272 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds