Wall clock time and date at job start Wed Apr 1 2020 06:48:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47565 * 2 1
4 4 C 1.50701 * 109.47113 * 239.99947 * 2 1 3
5 5 H 1.08003 * 120.00201 * 240.00054 * 4 2 1
6 6 C 1.37879 * 120.00095 * 60.00348 * 4 2 1
7 7 N 1.31522 * 119.99611 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 120.00300 * 179.97438 * 6 4 2
9 9 H 1.48498 * 109.46827 * 89.99911 * 8 6 4
10 10 H 1.48498 * 109.47249 * 210.00106 * 8 6 4
11 11 H 1.48497 * 109.47113 * 330.00395 * 8 6 4
12 12 N 1.46500 * 109.46978 * 120.00261 * 2 1 3
13 13 C 1.46500 * 120.00132 * 54.68016 * 12 2 1
14 14 S 1.65602 * 120.00238 * 234.67821 * 12 2 1
15 15 O 1.42093 * 106.40191 * 148.45853 * 14 12 2
16 16 O 1.42099 * 106.39994 * 15.53884 * 14 12 2
17 17 N 1.65596 * 107.22020 * 262.00290 * 14 12 2
18 18 C 1.47988 * 121.29180 * 272.41539 * 17 14 12
19 19 C 1.53290 * 107.85595 * 236.56711 * 18 17 14
20 20 C 1.49519 * 111.51206 * 278.09872 * 19 18 17
21 21 O 1.21272 * 115.66627 * 213.00863 * 20 19 18
22 22 N 1.32411 * 128.66637 * 33.02983 * 20 19 18
23 23 C 1.46199 * 123.78604 * 349.14858 * 22 20 19
24 24 C 1.45917 * 121.29888 * 92.39265 * 17 14 12
25 25 C 1.53195 * 114.49998 * 342.93839 * 24 17 14
26 26 O 1.44334 * 85.30056 * 93.08052 * 25 24 17
27 27 C 1.44324 * 93.45902 * 23.60481 * 26 25 24
28 28 H 1.09002 * 109.46932 * 59.99833 * 1 2 3
29 29 H 1.09000 * 109.47131 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47309 * 299.99920 * 1 2 3
31 31 H 0.96995 * 119.99805 * 180.02562 * 7 6 4
32 32 H 1.08995 * 109.47259 * 270.00147 * 13 12 2
33 33 H 1.09002 * 109.47114 * 30.00159 * 13 12 2
34 34 H 1.09000 * 109.47399 * 149.99591 * 13 12 2
35 35 H 1.08997 * 109.78867 * 356.15521 * 18 17 14
36 36 H 1.09005 * 109.78628 * 116.92292 * 18 17 14
37 37 H 1.09005 * 109.07346 * 38.61722 * 19 18 17
38 38 H 1.09001 * 109.07401 * 157.57484 * 19 18 17
39 39 H 0.97000 * 118.10390 * 169.14633 * 22 20 19
40 40 H 1.09002 * 109.50124 * 291.62061 * 23 22 20
41 41 H 1.08994 * 109.50340 * 171.51894 * 23 22 20
42 42 H 1.09002 * 113.89581 * 207.17254 * 25 24 17
43 43 H 1.08996 * 113.89945 * 338.98947 * 25 24 17
44 44 H 1.09008 * 113.90193 * 222.32533 * 27 26 25
45 45 H 1.08994 * 114.03452 * 90.50983 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2394 -2.4828
7 7 0.9428 0.8297 -2.6034
8 14 2.3225 -1.1195 -4.0080
9 1 1.3448 -2.1614 -4.4124
10 1 2.4874 -0.1401 -5.1120
11 1 3.6308 -1.7566 -3.7120
12 7 2.0183 -0.6907 1.1961
13 6 1.5709 -2.0547 1.4883
14 16 3.0760 0.0705 2.2180
15 8 2.8024 -0.4258 3.5211
16 8 3.0302 1.4516 1.8869
17 7 4.5976 -0.4537 1.8279
18 6 5.1683 -1.6769 2.4345
19 6 6.4879 -1.2931 3.1136
20 6 7.6131 -1.2333 2.1308
21 8 8.7014 -1.5556 2.5580
22 7 7.5804 -0.8751 0.8565
23 6 6.3456 -0.6749 0.0997
24 6 5.4276 0.2723 0.8722
25 6 4.6614 1.2612 -0.0120
26 8 5.0006 2.2397 0.9934
27 6 6.1447 1.4933 1.4589
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 0.7082 1.1609 -3.4843
32 1 0.6694 -2.0183 2.0999
33 1 1.3557 -2.5744 0.5546
34 1 2.3546 -2.5865 2.0278
35 1 4.4763 -2.0794 3.1742
36 1 5.3539 -2.4210 1.6598
37 1 6.3750 -0.3170 3.5855
38 1 6.7228 -2.0325 3.8792
39 1 8.4244 -0.7375 0.3986
40 1 5.8451 -1.6331 -0.0401
41 1 6.5807 -0.2416 -0.8724
42 1 5.1291 1.4422 -0.9798
43 1 3.5938 1.0538 -0.0839
44 1 6.2438 1.4681 2.5442
45 1 7.0756 1.7451 0.9510
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364928744.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:48:08
Heat of formation + Delta-G solvation = -81.352174 kcal
Electronic energy + Delta-G solvation = -32592.595791 eV
Core-core repulsion = 28353.999078 eV
Total energy + Delta-G solvation = -4238.596713 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.31220 -39.56584 -36.90437 -36.30813 -35.99197 -35.26229 -34.53329 -32.73800
-31.25097 -29.22612 -28.68686 -26.52670 -26.00993 -25.52920 -25.24118 -23.52138
-21.29379 -20.83577 -19.77006 -18.06714 -17.53499 -17.30860 -17.18789 -16.58260
-16.36057 -16.31787 -15.48449 -15.37448 -15.04997 -14.90692 -14.59943 -14.13149
-13.77865 -13.64842 -13.45694 -13.19874 -12.91191 -12.73226 -12.64630 -12.29000
-12.10733 -11.94065 -11.76618 -11.52342 -11.45532 -11.40009 -11.25090 -11.06149
-11.01289 -10.95277 -10.58589 -10.43694 -10.27113 -10.18072 -9.96750 -9.51866
-9.32699 -9.28137 -8.87987 -8.60196 -8.08549 -6.21952 -4.32272 1.01912
2.50873 3.08279 3.13354 3.13979 3.22393 3.23622 3.81251 3.97619
4.12749 4.22799 4.44770 4.57682 4.67714 4.79863 5.02047 5.07733
5.08733 5.11498 5.23757 5.35744 5.42391 5.50858 5.59528 5.66703
5.77058 5.90124 5.99285 6.04612 6.22351 6.37147 6.48122 6.52657
6.58783 6.61933 6.77829 6.79780 7.04139 7.21161 7.36512 7.49614
7.65250 7.92052 8.05824 8.11700 8.71609 9.35120 10.82347
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.012377 B = 0.005726 C = 0.004885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2261.752747 B = 4888.433460 C = 5730.531927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.260 3.740
3 H 0.068 0.932
4 C -0.531 4.531
5 H 0.063 0.937
6 C 0.068 3.932
7 N -0.881 5.881
8 Si 0.893 3.107
9 H -0.281 1.281
10 H -0.286 1.286
11 H -0.274 1.274
12 N -0.991 5.991
13 C 0.107 3.893
14 S 2.768 3.232
15 O -0.993 6.993
16 O -0.944 6.944
17 N -0.990 5.990
18 C 0.116 3.884
19 C -0.143 4.143
20 C 0.520 3.480
21 O -0.570 6.570
22 N -0.711 5.711
23 C 0.103 3.897
24 C 0.105 3.895
25 C 0.031 3.969
26 O -0.338 6.338
27 C 0.018 3.982
28 H 0.093 0.907
29 H 0.033 0.967
30 H 0.012 0.988
31 H 0.265 0.735
32 H 0.044 0.956
33 H 0.079 0.921
34 H 0.045 0.955
35 H 0.105 0.895
36 H 0.078 0.922
37 H 0.104 0.896
38 H 0.112 0.888
39 H 0.403 0.597
40 H 0.087 0.913
41 H 0.103 0.897
42 H 0.092 0.908
43 H 0.132 0.868
44 H 0.084 0.916
45 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.092 -4.423 4.458 10.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.157 3.843
3 H 0.085 0.915
4 C -0.571 4.571
5 H 0.081 0.919
6 C -0.135 4.135
7 N -0.519 5.519
8 Si 0.720 3.280
9 H -0.207 1.207
10 H -0.211 1.211
11 H -0.199 1.199
12 N -0.834 5.834
13 C -0.040 4.040
14 S 2.779 3.221
15 O -0.977 6.977
16 O -0.928 6.928
17 N -0.825 5.825
18 C -0.009 4.009
19 C -0.185 4.185
20 C 0.307 3.693
21 O -0.450 6.450
22 N -0.363 5.363
23 C -0.023 4.023
24 C 0.014 3.986
25 C -0.047 4.047
26 O -0.256 6.256
27 C -0.062 4.062
28 H 0.112 0.888
29 H 0.052 0.948
30 H 0.031 0.969
31 H 0.075 0.925
32 H 0.063 0.937
33 H 0.098 0.902
34 H 0.064 0.936
35 H 0.123 0.877
36 H 0.097 0.903
37 H 0.122 0.878
38 H 0.130 0.870
39 H 0.239 0.761
40 H 0.105 0.895
41 H 0.122 0.878
42 H 0.110 0.890
43 H 0.149 0.851
44 H 0.103 0.897
45 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 7.982 -3.641 5.454 10.331
hybrid contribution 0.679 -0.950 -1.573 1.959
sum 8.662 -4.592 3.881 10.544
Atomic orbital electron populations
1.22044 0.97682 0.99803 1.00836 1.18898 0.92175 0.93060 0.80135
0.91502 1.21359 1.32413 1.13268 0.90018 0.91903 1.24912 0.94888
0.94852 0.98895 1.69872 1.35684 1.22319 1.24014 0.86599 0.79216
0.79433 0.82717 1.20680 1.21139 1.19895 1.57863 1.59030 1.25191
1.41281 1.21175 0.98429 0.82984 1.01365 1.02535 0.72205 0.74070
0.73306 1.93540 1.83984 1.82379 1.37796 1.93736 1.85337 1.29686
1.84026 1.58641 1.32996 1.35929 1.54968 1.21718 0.94798 0.86737
0.97636 1.21955 0.92955 1.05909 0.97636 1.19926 0.90923 0.75811
0.82606 1.90753 1.29639 1.48298 1.76273 1.45351 1.10047 1.69809
1.11081 1.21896 0.84720 1.00752 0.94897 1.23141 0.92708 0.92288
0.90457 1.24712 1.04656 0.83303 0.92017 1.90017 1.40980 1.44076
1.50524 1.24346 0.91848 0.89204 1.00752 0.88816 0.94772 0.96880
0.92454 0.93698 0.90185 0.93628 0.87703 0.90337 0.87755 0.86957
0.76071 0.89475 0.87845 0.89030 0.85057 0.89743 0.89777
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.17 8.89 37.16 0.33 -2.84 16
2 C 0.26 5.69 1.84 -69.08 -0.13 5.57 16
3 H 0.07 1.64 5.22 -51.93 -0.27 1.37 16
4 C -0.53 -11.94 7.52 -34.44 -0.26 -12.20 16
5 H 0.06 1.36 7.71 -52.48 -0.40 0.96 16
6 C 0.07 1.61 5.30 -17.82 -0.09 1.52 16
7 N -0.88 -22.19 11.32 55.43 0.63 -21.56 16
8 Si 0.89 18.46 29.54 -169.99 -5.02 13.44 16
9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
10 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16
11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
12 N -0.99 -18.56 3.12 -115.86 -0.36 -18.92 16
13 C 0.11 1.70 9.16 59.85 0.55 2.24 16
14 S 2.77 50.75 5.56 -107.50 -0.60 50.15 16
15 O -0.99 -19.23 16.26 -57.17 -0.93 -20.16 16
16 O -0.94 -20.28 11.74 -66.99 -0.79 -21.06 16
17 N -0.99 -14.28 3.16 -109.06 -0.34 -14.63 16
18 C 0.12 1.33 5.92 -3.07 -0.02 1.31 16
19 C -0.14 -1.58 5.27 -28.30 -0.15 -1.73 16
20 C 0.52 6.40 6.85 -12.60 -0.09 6.31 16
21 O -0.57 -8.98 17.55 5.56 0.10 -8.88 16
22 N -0.71 -7.28 4.69 -61.59 -0.29 -7.57 16
23 C 0.10 1.09 5.97 -4.27 -0.03 1.07 16
24 C 0.10 1.44 0.96 -131.96 -0.13 1.31 16
25 C 0.03 0.52 7.56 37.22 0.28 0.80 16
26 O -0.34 -6.17 10.13 -59.29 -0.60 -6.77 16
27 C 0.02 0.25 7.27 37.26 0.27 0.52 16
28 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16
29 H 0.03 0.70 7.54 -51.93 -0.39 0.31 16
30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16
32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
33 H 0.08 1.28 7.41 -51.93 -0.38 0.89 16
34 H 0.04 0.60 7.99 -51.93 -0.41 0.18 16
35 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16
36 H 0.08 0.78 6.61 -51.93 -0.34 0.44 16
37 H 0.10 1.17 6.85 -51.93 -0.36 0.81 16
38 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16
39 H 0.40 3.56 8.74 -40.82 -0.36 3.20 16
40 H 0.09 0.93 6.79 -51.93 -0.35 0.57 16
41 H 0.10 0.90 7.69 -51.93 -0.40 0.50 16
42 H 0.09 1.32 7.80 -51.93 -0.41 0.92 16
43 H 0.13 2.64 2.74 -51.93 -0.14 2.50 16
44 H 0.08 1.13 6.94 -51.92 -0.36 0.77 16
45 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16
LS Contribution 350.83 15.07 5.29 5.29
Total: -1.00 -30.96 350.83 -8.46 -39.42
By element:
Atomic # 1 Polarization: 13.43 SS G_CDS: -6.08 Total: 7.35 kcal
Atomic # 6 Polarization: 3.35 SS G_CDS: 0.54 Total: 3.89 kcal
Atomic # 7 Polarization: -62.30 SS G_CDS: -0.37 Total: -62.67 kcal
Atomic # 8 Polarization: -54.65 SS G_CDS: -2.22 Total: -56.87 kcal
Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal
Atomic # 16 Polarization: 50.75 SS G_CDS: -0.60 Total: 50.15 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -30.96 -8.46 -39.42 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364928744.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.933 kcal
(2) G-P(sol) polarization free energy of solvation -30.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds