Wall clock time and date at job start Wed Apr 1 2020 06:48:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47565 * 2 1
4 4 C 1.50701 * 109.47113 * 239.99947 * 2 1 3
5 5 H 1.08003 * 120.00201 * 240.00054 * 4 2 1
6 6 C 1.37879 * 120.00095 * 60.00348 * 4 2 1
7 7 N 1.31522 * 119.99611 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 120.00300 * 179.97438 * 6 4 2
9 9 H 1.48498 * 109.46827 * 89.99911 * 8 6 4
10 10 H 1.48498 * 109.47249 * 210.00106 * 8 6 4
11 11 H 1.48497 * 109.47113 * 330.00395 * 8 6 4
12 12 N 1.46500 * 109.46978 * 120.00261 * 2 1 3
13 13 C 1.46500 * 120.00132 * 54.68016 * 12 2 1
14 14 S 1.65602 * 120.00238 * 234.67821 * 12 2 1
15 15 O 1.42093 * 106.40191 * 148.45853 * 14 12 2
16 16 O 1.42099 * 106.39994 * 15.53884 * 14 12 2
17 17 N 1.65596 * 107.22020 * 262.00290 * 14 12 2
18 18 C 1.47988 * 121.29180 * 272.41539 * 17 14 12
19 19 C 1.53290 * 107.85595 * 236.56711 * 18 17 14
20 20 C 1.49519 * 111.51206 * 278.09872 * 19 18 17
21 21 O 1.21272 * 115.66627 * 213.00863 * 20 19 18
22 22 N 1.32411 * 128.66637 * 33.02983 * 20 19 18
23 23 C 1.46199 * 123.78604 * 349.14858 * 22 20 19
24 24 C 1.45917 * 121.29888 * 92.39265 * 17 14 12
25 25 C 1.53195 * 114.49998 * 342.93839 * 24 17 14
26 26 O 1.44334 * 85.30056 * 93.08052 * 25 24 17
27 27 C 1.44324 * 93.45902 * 23.60481 * 26 25 24
28 28 H 1.09002 * 109.46932 * 59.99833 * 1 2 3
29 29 H 1.09000 * 109.47131 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47309 * 299.99920 * 1 2 3
31 31 H 0.96995 * 119.99805 * 180.02562 * 7 6 4
32 32 H 1.08995 * 109.47259 * 270.00147 * 13 12 2
33 33 H 1.09002 * 109.47114 * 30.00159 * 13 12 2
34 34 H 1.09000 * 109.47399 * 149.99591 * 13 12 2
35 35 H 1.08997 * 109.78867 * 356.15521 * 18 17 14
36 36 H 1.09005 * 109.78628 * 116.92292 * 18 17 14
37 37 H 1.09005 * 109.07346 * 38.61722 * 19 18 17
38 38 H 1.09001 * 109.07401 * 157.57484 * 19 18 17
39 39 H 0.97000 * 118.10390 * 169.14633 * 22 20 19
40 40 H 1.09002 * 109.50124 * 291.62061 * 23 22 20
41 41 H 1.08994 * 109.50340 * 171.51894 * 23 22 20
42 42 H 1.09002 * 113.89581 * 207.17254 * 25 24 17
43 43 H 1.08996 * 113.89945 * 338.98947 * 25 24 17
44 44 H 1.09008 * 113.90193 * 222.32533 * 27 26 25
45 45 H 1.08994 * 114.03452 * 90.50983 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2394 -2.4828
7 7 0.9428 0.8297 -2.6034
8 14 2.3225 -1.1195 -4.0080
9 1 1.3448 -2.1614 -4.4124
10 1 2.4874 -0.1401 -5.1120
11 1 3.6308 -1.7566 -3.7120
12 7 2.0183 -0.6907 1.1961
13 6 1.5709 -2.0547 1.4883
14 16 3.0760 0.0705 2.2180
15 8 2.8024 -0.4258 3.5211
16 8 3.0302 1.4516 1.8869
17 7 4.5976 -0.4537 1.8279
18 6 5.1683 -1.6769 2.4345
19 6 6.4879 -1.2931 3.1136
20 6 7.6131 -1.2333 2.1308
21 8 8.7014 -1.5556 2.5580
22 7 7.5804 -0.8751 0.8565
23 6 6.3456 -0.6749 0.0997
24 6 5.4276 0.2723 0.8722
25 6 4.6614 1.2612 -0.0120
26 8 5.0006 2.2397 0.9934
27 6 6.1447 1.4933 1.4589
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 0.7082 1.1609 -3.4843
32 1 0.6694 -2.0183 2.0999
33 1 1.3557 -2.5744 0.5546
34 1 2.3546 -2.5865 2.0278
35 1 4.4763 -2.0794 3.1742
36 1 5.3539 -2.4210 1.6598
37 1 6.3750 -0.3170 3.5855
38 1 6.7228 -2.0325 3.8792
39 1 8.4244 -0.7375 0.3986
40 1 5.8451 -1.6331 -0.0401
41 1 6.5807 -0.2416 -0.8724
42 1 5.1291 1.4422 -0.9798
43 1 3.5938 1.0538 -0.0839
44 1 6.2438 1.4681 2.5442
45 1 7.0756 1.7451 0.9510
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001364928744.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:48:07
Heat of formation + Delta-G solvation = -105.868325 kcal
Electronic energy + Delta-G solvation = -32593.658891 eV
Core-core repulsion = 28353.999078 eV
Total energy + Delta-G solvation = -4239.659813 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.39780 -40.63064 -38.35771 -37.86735 -37.15296 -36.78389 -35.48573 -34.44262
-32.29176 -30.88098 -29.75938 -27.74733 -27.23892 -26.93443 -26.74765 -24.53017
-22.62847 -22.20167 -20.84434 -19.38086 -18.85482 -18.52230 -18.25623 -18.22226
-17.65064 -17.32648 -16.82292 -16.65299 -16.33228 -16.08406 -15.99436 -15.21349
-15.12684 -14.91483 -14.73552 -14.43878 -14.28109 -13.89878 -13.85343 -13.67571
-13.28572 -13.22125 -13.15263 -12.96920 -12.84224 -12.76302 -12.68940 -12.58351
-12.49901 -12.27370 -12.09196 -12.02081 -11.79183 -11.60029 -11.12233 -10.97237
-10.63085 -10.40589 -10.35224 -9.91797 -9.61101 -8.00527 -6.15330 -0.38353
1.51357 1.55346 1.56257 1.62355 1.87681 2.20845 2.49760 2.56954
2.69319 3.06574 3.28752 3.31898 3.49862 3.68367 3.77558 4.06410
4.10026 4.15521 4.20089 4.32960 4.37508 4.50652 4.56339 4.66954
4.75554 4.78626 4.84032 4.92123 4.96924 5.00378 5.03366 5.15202
5.21767 5.32367 5.37601 5.43994 5.69067 5.78296 5.81627 5.93339
6.16046 6.32023 6.35009 6.94385 7.16461 7.54786 9.03614
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.012377 B = 0.005726 C = 0.004885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2261.752747 B = 4888.433460 C = 5730.531927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.267 3.733
3 H 0.037 0.963
4 C -0.519 4.519
5 H 0.075 0.925
6 C 0.023 3.977
7 N -0.917 5.917
8 Si 0.949 3.051
9 H -0.286 1.286
10 H -0.295 1.295
11 H -0.253 1.253
12 N -0.996 5.996
13 C 0.099 3.901
14 S 2.781 3.219
15 O -1.007 7.007
16 O -0.981 6.981
17 N -0.986 5.986
18 C 0.112 3.888
19 C -0.141 4.141
20 C 0.522 3.478
21 O -0.606 6.606
22 N -0.697 5.697
23 C 0.110 3.890
24 C 0.113 3.887
25 C 0.018 3.982
26 O -0.376 6.376
27 C 0.018 3.982
28 H 0.069 0.931
29 H 0.044 0.956
30 H 0.014 0.986
31 H 0.261 0.739
32 H 0.046 0.954
33 H 0.080 0.920
34 H 0.076 0.924
35 H 0.112 0.888
36 H 0.102 0.898
37 H 0.101 0.899
38 H 0.128 0.872
39 H 0.413 0.587
40 H 0.096 0.904
41 H 0.130 0.870
42 H 0.112 0.888
43 H 0.099 0.901
44 H 0.084 0.916
45 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.041 -6.604 4.188 12.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.163 3.837
3 H 0.055 0.945
4 C -0.558 4.558
5 H 0.093 0.907
6 C -0.177 4.177
7 N -0.556 5.556
8 Si 0.775 3.225
9 H -0.213 1.213
10 H -0.222 1.222
11 H -0.176 1.176
12 N -0.838 5.838
13 C -0.047 4.047
14 S 2.792 3.208
15 O -0.991 6.991
16 O -0.965 6.965
17 N -0.824 5.824
18 C -0.012 4.012
19 C -0.182 4.182
20 C 0.310 3.690
21 O -0.489 6.489
22 N -0.348 5.348
23 C -0.016 4.016
24 C 0.022 3.978
25 C -0.060 4.060
26 O -0.295 6.295
27 C -0.061 4.061
28 H 0.088 0.912
29 H 0.063 0.937
30 H 0.033 0.967
31 H 0.070 0.930
32 H 0.065 0.935
33 H 0.098 0.902
34 H 0.095 0.905
35 H 0.130 0.870
36 H 0.120 0.880
37 H 0.120 0.880
38 H 0.147 0.853
39 H 0.251 0.749
40 H 0.114 0.886
41 H 0.148 0.852
42 H 0.129 0.871
43 H 0.116 0.884
44 H 0.102 0.898
45 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 9.930 -5.846 5.192 12.639
hybrid contribution 0.069 -0.236 -1.418 1.439
sum 9.999 -6.082 3.775 12.297
Atomic orbital electron populations
1.21964 0.98284 1.00029 0.99728 1.18561 0.91655 0.92050 0.81390
0.94547 1.21549 1.31441 1.12898 0.89926 0.90693 1.25590 0.95227
0.95365 1.01523 1.70021 1.37438 1.24044 1.24129 0.85699 0.79440
0.77973 0.79345 1.21283 1.22176 1.17642 1.57735 1.59766 1.26181
1.40116 1.21394 0.99759 0.81689 1.01834 1.01912 0.72855 0.73202
0.72822 1.93514 1.84702 1.82406 1.38455 1.93695 1.86133 1.32272
1.84398 1.58328 1.31720 1.37052 1.55302 1.22002 0.94904 0.85762
0.98487 1.21962 0.92215 1.06350 0.97720 1.20100 0.90528 0.75224
0.83108 1.90752 1.30961 1.50167 1.76983 1.45232 1.10488 1.68559
1.10545 1.21929 0.84007 1.00451 0.95190 1.23043 0.92227 0.92761
0.89729 1.24734 1.03364 0.84698 0.93217 1.89981 1.42887 1.45345
1.51277 1.24563 0.91789 0.88587 1.01142 0.91204 0.93741 0.96738
0.92968 0.93505 0.90177 0.90532 0.86981 0.88021 0.88043 0.85342
0.74927 0.88600 0.85219 0.87052 0.88351 0.89760 0.87014
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.29 8.89 71.98 0.64 -5.65 16
2 C 0.27 11.80 1.84 44.24 0.08 11.89 16
3 H 0.04 1.87 5.22 -2.39 -0.01 1.86 16
4 C -0.52 -22.86 7.52 25.60 0.19 -22.67 16
5 H 0.07 3.06 7.71 -2.91 -0.02 3.04 16
6 C 0.02 1.08 5.30 84.65 0.45 1.52 16
7 N -0.92 -47.17 11.32 21.45 0.24 -46.93 16
8 Si 0.95 36.97 29.54 68.60 2.03 38.99 16
9 H -0.29 -11.36 7.11 99.48 0.71 -10.66 16
10 H -0.30 -11.90 7.11 99.48 0.71 -11.19 16
11 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16
12 N -1.00 -36.53 3.12 -520.46 -1.62 -38.15 16
13 C 0.10 2.94 9.16 127.77 1.17 4.11 16
14 S 2.78 100.41 5.56 -56.49 -0.31 100.09 16
15 O -1.01 -37.97 16.26 -128.00 -2.08 -40.05 16
16 O -0.98 -43.19 11.74 -118.62 -1.39 -44.59 16
17 N -0.99 -26.45 3.16 -512.40 -1.62 -28.07 16
18 C 0.11 2.21 5.92 86.19 0.51 2.71 16
19 C -0.14 -2.71 5.27 29.58 0.16 -2.56 16
20 C 0.52 11.28 6.85 87.65 0.60 11.88 16
21 O -0.61 -17.65 17.55 -3.01 -0.05 -17.70 16
22 N -0.70 -11.71 4.69 -468.46 -2.20 -13.91 16
23 C 0.11 1.90 5.97 86.39 0.52 2.41 16
24 C 0.11 2.85 0.96 3.82 0.00 2.85 16
25 C 0.02 0.58 7.56 72.02 0.54 1.13 16
26 O -0.38 -13.71 10.13 -125.97 -1.28 -14.99 16
27 C 0.02 0.47 7.27 72.05 0.52 0.99 16
28 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16
29 H 0.04 1.83 7.54 -2.39 -0.02 1.82 16
30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16
32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.08 2.38 7.41 -2.39 -0.02 2.36 16
34 H 0.08 1.77 7.99 -2.39 -0.02 1.76 16
35 H 0.11 2.09 7.11 -2.39 -0.02 2.07 16
36 H 0.10 1.57 6.61 -2.38 -0.02 1.56 16
37 H 0.10 2.05 6.85 -2.38 -0.02 2.03 16
38 H 0.13 2.09 8.09 -2.39 -0.02 2.07 16
39 H 0.41 5.74 8.74 -92.71 -0.81 4.93 16
40 H 0.10 1.58 6.79 -2.39 -0.02 1.57 16
41 H 0.13 1.65 7.69 -2.39 -0.02 1.63 16
42 H 0.11 3.07 7.80 -2.39 -0.02 3.05 16
43 H 0.10 4.00 2.74 -2.39 -0.01 3.99 16
44 H 0.08 2.14 6.94 -2.38 -0.02 2.13 16
45 H 0.11 2.22 8.04 -2.39 -0.02 2.20 16
Total: -1.00 -68.36 350.83 -2.67 -71.02
By element:
Atomic # 1 Polarization: 25.42 SS G_CDS: 0.23 Total: 25.66 kcal
Atomic # 6 Polarization: 3.23 SS G_CDS: 5.39 Total: 8.62 kcal
Atomic # 7 Polarization: -121.86 SS G_CDS: -5.20 Total: -127.06 kcal
Atomic # 8 Polarization: -112.52 SS G_CDS: -4.80 Total: -117.32 kcal
Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 38.99 kcal
Atomic # 16 Polarization: 100.41 SS G_CDS: -0.31 Total: 100.09 kcal
Total: -68.36 -2.67 -71.02 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364928744.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.844 kcal
(2) G-P(sol) polarization free energy of solvation -68.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds