Wall clock time and date at job start Wed Apr 1 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47133 * 239.99872 * 2 1 3 13 13 C 1.46502 * 120.00286 * 300.00061 * 12 2 1 14 14 S 1.65600 * 119.99541 * 119.99991 * 12 2 1 15 15 O 1.42108 * 106.40057 * 203.53663 * 14 12 2 16 16 O 1.42098 * 106.40478 * 336.46023 * 14 12 2 17 17 N 1.65599 * 107.21837 * 90.00357 * 14 12 2 18 18 C 1.46810 * 120.34183 * 89.99639 * 17 14 12 19 19 C 1.53429 * 109.42626 * 128.10077 * 18 17 14 20 20 C 1.52734 * 108.61225 * 53.57731 * 19 18 17 21 21 H 1.08996 * 109.46058 * 57.19897 * 20 19 18 22 22 C 1.52963 * 111.26534 * 178.26756 * 20 19 18 23 23 O 1.45610 * 107.76594 * 181.31837 * 22 20 19 24 24 C 1.34106 * 117.98864 * 316.51818 * 23 22 20 25 25 O 1.21509 * 118.23003 * 194.61571 * 24 23 22 26 26 N 1.34112 * 123.54885 * 14.59101 * 24 23 22 27 27 C 1.45598 * 121.78753 * 356.08088 * 26 24 23 28 28 H 1.09004 * 108.99979 * 264.52869 * 27 26 24 29 29 C 1.47226 * 120.33286 * 269.71637 * 17 14 12 30 30 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 31 31 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 32 32 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46882 * 90.00054 * 13 12 2 35 35 H 1.08999 * 109.46696 * 210.00247 * 13 12 2 36 36 H 1.09005 * 109.46760 * 330.00268 * 13 12 2 37 37 H 1.09001 * 109.47933 * 248.09090 * 18 17 14 38 38 H 1.09001 * 109.47603 * 8.10941 * 18 17 14 39 39 H 1.09001 * 109.61586 * 173.31007 * 19 18 17 40 40 H 1.08999 * 109.61559 * 293.66063 * 19 18 17 41 41 H 1.08996 * 109.80359 * 300.89340 * 22 20 19 42 42 H 1.08998 * 109.80450 * 61.76534 * 22 20 19 43 43 H 0.96999 * 119.10950 * 176.09939 * 26 24 23 44 44 H 1.09005 * 109.77436 * 352.56313 * 29 17 14 45 45 H 1.09006 * 109.77130 * 113.34530 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1143 -2.2861 15 8 2.8229 -0.5646 -3.5258 16 8 2.6903 1.4973 -2.1192 17 7 4.5437 -0.1042 -1.8179 18 6 5.3154 -1.2471 -2.3213 19 6 6.6419 -0.7481 -2.9090 20 6 7.3525 0.1010 -1.8570 21 1 7.4991 -0.4892 -0.9524 22 6 8.7071 0.5965 -2.3663 23 8 9.3287 1.3665 -1.2982 24 6 8.5620 2.2301 -0.6166 25 8 9.1113 3.0608 0.0796 26 7 7.2216 2.2270 -0.6621 27 6 6.4860 1.3226 -1.5344 28 1 6.2456 1.8418 -2.4622 29 6 5.1848 0.8494 -0.8974 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.7129 1.1642 3.4844 34 1 0.7377 -2.1444 -1.9993 35 1 2.4630 -2.5818 -1.9863 36 1 1.5295 -2.5969 -0.4707 37 1 5.5175 -1.9381 -1.5028 38 1 4.7441 -1.7585 -3.0960 39 1 7.2677 -1.6000 -3.1752 40 1 6.4457 -0.1469 -3.7968 41 1 9.3382 -0.2540 -2.6240 42 1 8.5633 1.2294 -3.2420 43 1 6.7289 2.8440 -0.0988 44 1 4.5257 1.7016 -0.7314 45 1 5.3994 0.3581 0.0517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413391189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:35 Heat of formation + Delta-G solvation = -171.530495 kcal Electronic energy + Delta-G solvation = -31019.387743 eV Core-core repulsion = 26776.880605 eV Total energy + Delta-G solvation = -4242.507138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.27993 -39.60395 -38.42788 -38.03517 -37.87160 -36.91533 -35.89841 -34.49840 -33.83763 -31.00760 -30.87631 -28.35700 -27.24489 -26.98253 -25.04910 -24.40912 -22.77778 -22.47530 -21.02348 -19.96917 -19.40470 -18.82000 -18.58901 -18.29091 -18.12557 -17.35103 -17.10447 -16.60981 -16.29156 -15.95278 -15.51202 -15.41222 -15.21863 -15.08287 -14.92593 -14.50974 -14.46364 -14.05626 -13.82633 -13.71861 -13.43497 -13.23244 -13.17329 -12.98106 -12.96132 -12.75135 -12.72761 -12.69848 -12.56919 -12.19680 -12.13161 -12.02811 -11.94848 -11.86585 -11.58511 -11.34236 -11.16261 -10.51064 -10.48928 -10.05460 -9.63636 -8.09018 -6.23128 -0.38463 1.44308 1.47617 1.49524 1.54817 1.62141 1.94097 2.37518 2.45828 2.59183 3.19861 3.20986 3.36010 3.37861 3.65233 3.87114 3.91653 4.08118 4.12711 4.22413 4.39341 4.52553 4.54918 4.66401 4.70590 4.76203 4.78183 4.81242 4.91510 4.92770 4.97667 5.00945 5.14577 5.18010 5.27552 5.29077 5.49967 5.62591 5.67934 5.75697 5.87305 6.10808 6.29576 6.53601 6.86535 6.95644 7.46827 8.95334 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.004606 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.503351 B = 6077.366353 C = 7594.486859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.027 0.973 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.264 1.264 12 N -0.998 5.998 13 C 0.100 3.900 14 S 2.792 3.208 15 O -0.997 6.997 16 O -1.013 7.013 17 N -0.997 5.997 18 C 0.104 3.896 19 C -0.109 4.109 20 C -0.133 4.133 21 H 0.098 0.902 22 C 0.064 3.936 23 O -0.355 6.355 24 C 0.664 3.336 25 O -0.586 6.586 26 N -0.714 5.714 27 C 0.123 3.877 28 H 0.089 0.911 29 C 0.119 3.881 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.153 0.847 42 H 0.095 0.905 43 H 0.423 0.577 44 H 0.082 0.918 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.418 -7.656 -12.156 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.188 1.188 12 N -0.839 5.839 13 C -0.046 4.046 14 S 2.803 3.197 15 O -0.981 6.981 16 O -0.997 6.997 17 N -0.837 5.837 18 C -0.020 4.020 19 C -0.148 4.148 20 C -0.153 4.153 21 H 0.116 0.884 22 C -0.008 4.008 23 O -0.266 6.266 24 C 0.417 3.583 25 O -0.475 6.475 26 N -0.380 5.380 27 C 0.017 3.983 28 H 0.107 0.893 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.171 0.829 42 H 0.113 0.887 43 H 0.262 0.738 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.673 -6.899 -12.608 18.516 hybrid contribution -0.610 0.124 1.785 1.891 sum 11.063 -6.775 -10.823 16.895 Atomic orbital electron populations 1.21951 0.98195 0.99999 0.99831 1.18373 0.91755 0.91439 0.81501 0.95568 1.21584 1.31311 1.12988 0.90394 0.91164 1.25614 0.95239 0.95549 1.01618 1.70011 1.37597 1.23799 1.24211 0.85649 0.77738 0.79375 0.79367 1.20691 1.21716 1.18829 1.57684 1.65016 1.22545 1.38634 1.21385 1.00506 0.80492 1.02179 1.01409 0.72961 0.72469 0.72877 1.93524 1.86289 1.76190 1.42060 1.93531 1.84513 1.34537 1.87160 1.57955 1.29253 1.36003 1.60487 1.21812 0.93396 0.86843 0.99963 1.21802 0.95151 1.01109 0.96721 1.22069 0.94710 0.96002 1.02493 0.88401 1.23921 0.93772 0.96558 0.86586 1.86610 1.39603 1.52079 1.48290 1.17897 0.81160 0.79818 0.79410 1.90997 1.72964 1.38036 1.45545 1.45300 1.04506 1.41447 1.46778 1.21358 0.92133 0.91150 0.93685 0.89276 1.21361 0.93690 0.92820 0.92882 0.91337 0.96361 0.93809 0.92845 0.93266 0.90220 0.90687 0.89645 0.88104 0.85511 0.89927 0.82940 0.88679 0.73814 0.89929 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.44 8.97 71.98 0.65 -5.80 16 2 C 0.27 12.57 2.62 44.25 0.12 12.69 16 3 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 4 C -0.52 -24.90 7.99 25.60 0.20 -24.70 16 5 H 0.07 3.17 7.33 -2.91 -0.02 3.15 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -49.24 11.33 21.45 0.24 -49.00 16 8 Si 0.95 40.00 29.54 68.60 2.03 42.03 16 9 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 12 N -1.00 -37.11 3.12 -520.45 -1.62 -38.73 16 13 C 0.10 3.05 9.28 127.77 1.19 4.23 16 14 S 2.79 95.64 6.09 -56.49 -0.34 95.29 16 15 O -1.00 -34.22 15.76 -128.00 -2.02 -36.24 16 16 O -1.01 -42.47 15.26 -128.00 -1.95 -44.43 16 17 N -1.00 -25.21 3.36 -513.58 -1.73 -26.94 16 18 C 0.10 1.72 6.46 86.46 0.56 2.28 16 19 C -0.11 -1.07 5.50 30.65 0.17 -0.90 16 20 C -0.13 -1.78 2.08 -10.82 -0.02 -1.81 16 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 22 C 0.06 0.74 6.64 71.97 0.48 1.22 16 23 O -0.35 -8.01 10.46 -50.15 -0.52 -8.54 16 24 C 0.66 18.34 8.54 129.89 1.11 19.45 16 25 O -0.59 -21.46 17.96 19.95 0.36 -21.10 16 26 N -0.71 -16.44 5.32 -574.58 -3.06 -19.49 16 27 C 0.12 2.43 2.92 45.03 0.13 2.56 16 28 H 0.09 1.66 8.13 -2.38 -0.02 1.65 16 29 C 0.12 3.04 6.13 86.05 0.53 3.57 16 30 H 0.07 3.50 6.08 -2.39 -0.01 3.49 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 1.86 7.67 -2.38 -0.02 1.84 16 33 H 0.26 13.58 8.31 -92.71 -0.77 12.80 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16 36 H 0.07 2.37 7.02 -2.38 -0.02 2.35 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.65 6.86 -2.39 -0.02 1.63 16 39 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.42 9.76 8.77 -92.71 -0.81 8.95 16 44 H 0.08 2.51 6.89 -2.38 -0.02 2.49 16 45 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -71.55 367.00 -2.86 -74.41 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.20 Total: 18.50 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.55 Total: 14.23 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -6.16 Total: -134.16 kcal Atomic # 8 Polarization: -106.17 SS G_CDS: -4.14 Total: -110.31 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 95.64 SS G_CDS: -0.34 Total: 95.29 kcal Total: -71.55 -2.86 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413391189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.117 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds