Wall clock time and date at job start Wed Apr 1 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 N 1.65597 * 107.21687 * 89.99960 * 14 12 2 18 18 C 1.46815 * 120.32975 * 269.71878 * 17 14 12 19 19 C 1.53861 * 109.18751 * 128.09224 * 18 17 14 20 20 C 1.52731 * 108.53210 * 53.80872 * 19 18 17 21 21 H 1.09005 * 109.45670 * 57.05851 * 20 19 18 22 22 C 1.52961 * 111.26893 * 178.10520 * 20 19 18 23 23 O 1.45613 * 107.75610 * 181.36080 * 22 20 19 24 24 C 1.34110 * 117.97957 * 316.48936 * 23 22 20 25 25 O 1.21511 * 118.22824 * 194.59684 * 24 23 22 26 26 N 1.34121 * 123.54992 * 14.62228 * 24 23 22 27 27 C 1.45603 * 121.78776 * 356.07030 * 26 24 23 28 28 H 1.08998 * 108.54064 * 264.78994 * 27 26 24 29 29 C 1.47216 * 120.33419 * 89.99673 * 17 14 12 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 35 35 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 36 36 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 37 37 H 1.08996 * 109.47868 * 248.13490 * 18 17 14 38 38 H 1.09000 * 109.47776 * 8.17396 * 18 17 14 39 39 H 1.08996 * 109.75636 * 294.03440 * 19 18 17 40 40 H 1.09001 * 109.69235 * 173.54036 * 19 18 17 41 41 H 1.09005 * 109.80690 * 300.92622 * 22 20 19 42 42 H 1.09003 * 109.80359 * 61.73929 * 22 20 19 43 43 H 0.96993 * 119.10430 * 176.08394 * 26 24 23 44 44 H 1.09003 * 109.76911 * 352.51205 * 29 17 14 45 45 H 1.09005 * 109.76639 * 113.29270 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.4465 2.1678 3.1882 19 6 -0.0849 2.1576 3.3364 20 6 -0.4380 1.5338 4.6850 21 1 0.0520 2.0922 5.4828 22 6 -1.9497 1.5349 4.9181 23 8 -2.1970 0.9568 6.2315 24 6 -1.5115 -0.1439 6.5736 25 8 -1.8935 -0.7837 7.5334 26 7 -0.4268 -0.5765 5.9140 27 6 0.0490 0.0814 4.7053 28 1 -0.3607 -0.4421 3.8415 29 6 1.5747 0.0728 4.6148 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2852 2.5002 36 1 0.6903 -2.3002 0.9846 37 1 1.8817 2.8403 3.9273 38 1 1.7137 2.5057 2.1869 39 1 -0.5289 1.5691 2.5336 40 1 -0.4647 3.1785 3.2948 41 1 -2.3274 2.5570 4.8875 42 1 -2.4420 0.9363 4.1516 43 1 0.0536 -1.3488 6.2511 44 1 1.9347 -0.9542 4.5536 45 1 1.9989 0.5612 5.4922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413391191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:40 Heat of formation + Delta-G solvation = -144.541054 kcal Electronic energy + Delta-G solvation = -31242.625857 eV Core-core repulsion = 27001.289069 eV Total energy + Delta-G solvation = -4241.336788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43011 -38.69517 -37.12027 -36.93843 -36.29054 -35.41030 -34.99213 -33.03522 -32.68381 -30.12531 -29.20543 -27.56727 -25.73854 -25.25269 -24.21679 -23.62127 -21.92334 -20.73895 -20.23908 -18.92665 -18.37068 -17.76680 -17.24123 -17.02632 -16.43868 -16.38981 -15.85757 -15.45488 -15.12929 -14.74095 -14.67190 -14.48773 -14.27807 -13.77743 -13.59501 -13.34774 -13.22917 -12.98493 -12.85884 -12.14892 -12.06116 -11.93173 -11.90582 -11.75310 -11.67015 -11.47298 -11.33593 -11.17517 -11.09803 -11.01924 -10.91035 -10.82566 -10.65381 -10.41546 -10.36323 -10.11515 -9.63342 -9.38509 -9.11520 -8.55088 -8.09951 -6.17258 -4.23521 0.92894 2.35912 2.57671 3.03473 3.21622 3.30495 3.33230 3.36010 3.83343 3.96195 4.05860 4.32453 4.40179 4.50977 4.65881 4.74325 4.81679 4.95279 5.04080 5.09833 5.15047 5.21611 5.40468 5.43636 5.48470 5.52372 5.58427 5.66912 5.93739 5.97370 6.00384 6.22944 6.40227 6.51159 6.52221 6.64562 6.68568 6.87193 7.31523 7.38908 7.51317 7.67309 7.88653 7.92488 8.16444 8.79069 9.43112 10.88356 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.003691 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.052937 B = 7583.838531 C = 8043.067366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.775 3.225 15 O -0.991 6.991 16 O -0.967 6.967 17 N -1.008 6.008 18 C 0.121 3.879 19 C -0.125 4.125 20 C -0.135 4.135 21 H 0.094 0.906 22 C 0.066 3.934 23 O -0.343 6.343 24 C 0.661 3.339 25 O -0.539 6.539 26 N -0.724 5.724 27 C 0.117 3.883 28 H 0.089 0.911 29 C 0.122 3.878 30 H 0.093 0.907 31 H 0.010 0.990 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.420 0.580 44 H 0.098 0.902 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 2.519 12.499 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.037 4.037 14 S 2.785 3.215 15 O -0.975 6.975 16 O -0.950 6.950 17 N -0.846 5.846 18 C -0.004 4.004 19 C -0.165 4.165 20 C -0.154 4.154 21 H 0.113 0.887 22 C -0.008 4.008 23 O -0.254 6.254 24 C 0.414 3.586 25 O -0.424 6.424 26 N -0.392 5.392 27 C 0.010 3.990 28 H 0.107 0.893 29 C -0.006 4.006 30 H 0.112 0.888 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.259 0.741 44 H 0.116 0.884 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.784 2.730 12.878 13.697 hybrid contribution 0.187 -0.776 -1.035 1.307 sum -3.597 1.954 11.843 12.531 Atomic orbital electron populations 1.22159 0.98269 0.99756 1.00520 1.18746 0.91240 0.92929 0.80546 0.92398 1.21357 1.31612 1.13043 0.89990 0.91915 1.24887 0.94899 0.94973 0.99006 1.69847 1.36575 1.22673 1.23765 0.86454 0.78653 0.79712 0.82685 1.19731 1.20977 1.20859 1.57782 1.69982 1.19769 1.35603 1.21151 1.01875 0.82101 0.98543 1.02229 0.73842 0.73142 0.72293 1.93542 1.68979 1.60286 1.74661 1.93609 1.73644 1.55897 1.71880 1.58557 1.67406 1.24453 1.34149 1.21494 0.92872 0.82343 1.03688 1.21990 0.96944 1.02227 0.95297 1.22024 0.95898 0.96178 1.01333 0.88734 1.23555 0.95430 1.00482 0.81311 1.86641 1.61827 1.40308 1.36655 1.17890 0.79162 0.79320 0.82225 1.91035 1.69282 1.52744 1.29371 1.45334 1.29730 1.35003 1.29121 1.21495 0.96361 0.93357 0.87749 0.89333 1.21442 0.92226 0.98182 0.88703 0.88820 0.97075 0.94773 0.92714 0.93128 0.93568 0.90900 0.91124 0.88020 0.89497 0.89359 0.86416 0.89915 0.74114 0.88375 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.95 37.16 0.33 -2.58 16 2 C 0.27 5.88 2.62 -69.08 -0.18 5.70 16 3 H 0.06 1.41 6.91 -51.93 -0.36 1.05 16 4 C -0.52 -13.13 8.37 -34.44 -0.29 -13.42 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.22 11.32 55.43 0.63 -22.59 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.99 -18.14 3.12 -115.84 -0.36 -18.50 16 13 C 0.11 1.73 9.53 59.85 0.57 2.30 16 14 S 2.77 48.27 6.04 -107.50 -0.65 47.62 16 15 O -0.99 -18.49 15.92 -57.17 -0.91 -19.40 16 16 O -0.97 -20.36 15.40 -57.17 -0.88 -21.24 16 17 N -1.01 -12.40 3.35 -113.20 -0.38 -12.78 16 18 C 0.12 1.28 6.37 -3.42 -0.02 1.26 16 19 C -0.13 -1.01 5.52 -26.42 -0.15 -1.16 16 20 C -0.14 -1.04 2.07 -90.67 -0.19 -1.23 16 21 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 22 C 0.07 0.50 6.64 37.14 0.25 0.75 16 23 O -0.34 -3.94 10.46 -39.03 -0.41 -4.34 16 24 C 0.66 8.26 8.54 53.76 0.46 8.72 16 25 O -0.54 -8.80 17.96 -19.43 -0.35 -9.14 16 26 N -0.72 -6.78 5.32 -59.59 -0.32 -7.09 16 27 C 0.12 1.02 2.94 -68.39 -0.20 0.82 16 28 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 29 C 0.12 1.18 6.04 -3.73 -0.02 1.16 16 30 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 31 H 0.01 0.17 6.48 -51.93 -0.34 -0.17 16 32 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 33 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 36 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.28 7.11 -51.93 -0.37 0.91 16 39 H 0.09 0.81 6.48 -51.93 -0.34 0.47 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.42 3.38 8.78 -40.82 -0.36 3.02 16 44 H 0.10 0.95 7.14 -51.93 -0.37 0.58 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -33.04 363.57 -9.15 -42.19 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.45 Total: 0.69 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.47 Total: 3.89 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.43 Total: -60.97 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -2.55 Total: -54.13 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.65 Total: 47.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.04 -9.15 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413391191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.354 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds