Wall clock time and date at job start Wed Apr 1 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 N 1.65597 * 107.21687 * 89.99960 * 14 12 2 18 18 C 1.46815 * 120.32975 * 269.71878 * 17 14 12 19 19 C 1.53861 * 109.18751 * 128.09224 * 18 17 14 20 20 C 1.52731 * 108.53210 * 53.80872 * 19 18 17 21 21 H 1.09005 * 109.45670 * 57.05851 * 20 19 18 22 22 C 1.52961 * 111.26893 * 178.10520 * 20 19 18 23 23 O 1.45613 * 107.75610 * 181.36080 * 22 20 19 24 24 C 1.34110 * 117.97957 * 316.48936 * 23 22 20 25 25 O 1.21511 * 118.22824 * 194.59684 * 24 23 22 26 26 N 1.34121 * 123.54992 * 14.62228 * 24 23 22 27 27 C 1.45603 * 121.78776 * 356.07030 * 26 24 23 28 28 H 1.08998 * 108.54064 * 264.78994 * 27 26 24 29 29 C 1.47216 * 120.33419 * 89.99673 * 17 14 12 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 35 35 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 36 36 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 37 37 H 1.08996 * 109.47868 * 248.13490 * 18 17 14 38 38 H 1.09000 * 109.47776 * 8.17396 * 18 17 14 39 39 H 1.08996 * 109.75636 * 294.03440 * 19 18 17 40 40 H 1.09001 * 109.69235 * 173.54036 * 19 18 17 41 41 H 1.09005 * 109.80690 * 300.92622 * 22 20 19 42 42 H 1.09003 * 109.80359 * 61.73929 * 22 20 19 43 43 H 0.96993 * 119.10430 * 176.08394 * 26 24 23 44 44 H 1.09003 * 109.76911 * 352.51205 * 29 17 14 45 45 H 1.09005 * 109.76639 * 113.29270 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.4465 2.1678 3.1882 19 6 -0.0849 2.1576 3.3364 20 6 -0.4380 1.5338 4.6850 21 1 0.0520 2.0922 5.4828 22 6 -1.9497 1.5349 4.9181 23 8 -2.1970 0.9568 6.2315 24 6 -1.5115 -0.1439 6.5736 25 8 -1.8935 -0.7837 7.5334 26 7 -0.4268 -0.5765 5.9140 27 6 0.0490 0.0814 4.7053 28 1 -0.3607 -0.4421 3.8415 29 6 1.5747 0.0728 4.6148 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2852 2.5002 36 1 0.6903 -2.3002 0.9846 37 1 1.8817 2.8403 3.9273 38 1 1.7137 2.5057 2.1869 39 1 -0.5289 1.5691 2.5336 40 1 -0.4647 3.1785 3.2948 41 1 -2.3274 2.5570 4.8875 42 1 -2.4420 0.9363 4.1516 43 1 0.0536 -1.3488 6.2511 44 1 1.9347 -0.9542 4.5536 45 1 1.9989 0.5612 5.4922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413391191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:39 Heat of formation + Delta-G solvation = -170.701323 kcal Electronic energy + Delta-G solvation = -31243.760252 eV Core-core repulsion = 27001.289069 eV Total energy + Delta-G solvation = -4242.471183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24369 -39.58348 -38.42221 -38.01915 -37.84859 -36.89904 -35.87412 -34.50253 -33.83402 -31.02564 -30.76243 -28.32664 -27.25618 -26.97548 -25.04354 -24.38988 -22.97645 -22.18820 -20.97582 -19.97836 -19.39127 -18.88371 -18.61424 -18.25460 -18.06456 -17.35258 -17.08009 -16.59272 -16.23502 -15.93056 -15.50167 -15.41966 -15.27050 -15.10452 -14.85933 -14.56379 -14.47495 -14.02343 -13.90794 -13.66794 -13.37297 -13.17723 -13.15691 -12.98864 -12.91357 -12.82031 -12.72187 -12.59248 -12.52214 -12.24697 -12.12688 -12.01323 -11.91127 -11.86489 -11.56446 -11.31462 -11.07017 -10.50085 -10.45873 -10.05662 -9.62752 -8.10392 -6.22174 -0.41511 1.40860 1.45340 1.51955 1.54031 1.66694 1.99567 2.40354 2.45855 2.59561 3.18554 3.22078 3.37764 3.37951 3.64947 3.85963 3.89184 4.09423 4.14750 4.23449 4.38658 4.48056 4.54604 4.64987 4.68711 4.76123 4.78104 4.83592 4.90088 4.93131 5.01767 5.05691 5.15937 5.18698 5.20958 5.40064 5.50939 5.65719 5.75960 5.83069 5.92598 6.18930 6.35196 6.56439 6.85144 7.01588 7.46716 8.93065 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.003691 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.052937 B = 7583.838531 C = 8043.067366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.029 0.971 4 C -0.538 4.538 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.946 3.054 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.995 5.995 13 C 0.104 3.896 14 S 2.789 3.211 15 O -1.006 7.006 16 O -1.009 7.009 17 N -0.997 5.997 18 C 0.112 3.888 19 C -0.115 4.115 20 C -0.129 4.129 21 H 0.104 0.896 22 C 0.064 3.936 23 O -0.357 6.357 24 C 0.663 3.337 25 O -0.586 6.586 26 N -0.708 5.708 27 C 0.119 3.881 28 H 0.091 0.909 29 C 0.117 3.883 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.089 0.911 43 H 0.426 0.574 44 H 0.100 0.900 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 2.868 13.492 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.578 4.578 5 H 0.069 0.931 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.837 5.837 13 C -0.042 4.042 14 S 2.800 3.200 15 O -0.990 6.990 16 O -0.993 6.993 17 N -0.838 5.838 18 C -0.012 4.012 19 C -0.155 4.155 20 C -0.148 4.148 21 H 0.122 0.878 22 C -0.009 4.009 23 O -0.267 6.267 24 C 0.416 3.584 25 O -0.475 6.475 26 N -0.375 5.375 27 C 0.013 3.987 28 H 0.109 0.891 29 C -0.009 4.009 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.164 0.836 42 H 0.108 0.892 43 H 0.266 0.734 44 H 0.118 0.882 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.680 3.066 13.845 14.932 hybrid contribution 0.515 -0.836 -1.301 1.630 sum -4.165 2.231 12.543 13.404 Atomic orbital electron populations 1.21928 0.96417 1.00099 1.00864 1.18406 0.92471 0.91286 0.80790 0.95295 1.21693 1.31473 1.12890 0.91753 0.93079 1.25500 0.95295 0.95684 1.01232 1.69943 1.37221 1.23428 1.24158 0.85691 0.78279 0.78657 0.80090 1.19835 1.20142 1.21104 1.57660 1.69942 1.20869 1.35226 1.21322 1.01621 0.80494 1.00732 1.01537 0.73917 0.72325 0.72260 1.93513 1.69874 1.60890 1.74728 1.93550 1.75174 1.57249 1.73353 1.58094 1.66938 1.25071 1.33694 1.21735 0.94905 0.81386 1.03201 1.21924 0.94691 1.03847 0.95010 1.21985 0.96179 0.95261 1.01361 0.87757 1.23852 0.95336 1.01924 0.79807 1.86617 1.61857 1.39759 1.38506 1.17951 0.79428 0.79247 0.81781 1.91001 1.70593 1.54461 1.31452 1.45198 1.28739 1.34828 1.28765 1.21507 0.95565 0.94335 0.87320 0.89127 1.21654 0.93044 0.98279 0.87885 0.91658 0.93497 0.94318 0.92702 0.94508 0.90186 0.90320 0.88729 0.90405 0.90485 0.86529 0.83631 0.89223 0.73373 0.88204 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.95 71.98 0.64 -4.52 16 2 C 0.27 12.10 2.62 44.25 0.12 12.21 16 3 H 0.03 1.45 6.91 -2.39 -0.02 1.44 16 4 C -0.54 -27.53 8.37 25.60 0.21 -27.31 16 5 H 0.05 2.66 7.65 -2.91 -0.02 2.63 16 6 C 0.02 1.20 5.30 84.65 0.45 1.64 16 7 N -0.91 -47.86 11.32 21.45 0.24 -47.62 16 8 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -1.00 -36.04 3.12 -520.41 -1.62 -37.66 16 13 C 0.10 3.16 9.53 127.77 1.22 4.38 16 14 S 2.79 95.53 6.04 -56.49 -0.34 95.19 16 15 O -1.01 -36.64 15.92 -128.00 -2.04 -38.68 16 16 O -1.01 -43.28 15.40 -128.00 -1.97 -45.25 16 17 N -1.00 -22.52 3.35 -512.04 -1.72 -24.24 16 18 C 0.11 2.12 6.37 86.61 0.55 2.67 16 19 C -0.12 -1.46 5.52 30.80 0.17 -1.29 16 20 C -0.13 -1.50 2.07 -10.83 -0.02 -1.52 16 21 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 22 C 0.06 0.73 6.64 71.97 0.48 1.21 16 23 O -0.36 -7.30 10.46 -50.19 -0.52 -7.82 16 24 C 0.66 15.36 8.54 129.89 1.11 16.47 16 25 O -0.59 -18.75 17.96 19.95 0.36 -18.39 16 26 N -0.71 -11.50 5.32 -573.87 -3.05 -14.55 16 27 C 0.12 1.71 2.94 45.18 0.13 1.84 16 28 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 29 C 0.12 1.94 6.04 86.19 0.52 2.46 16 30 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 31 H 0.05 1.42 6.48 -2.39 -0.02 1.41 16 32 H 0.04 1.42 6.66 -2.38 -0.02 1.41 16 33 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 36 H 0.08 2.28 6.43 -2.38 -0.02 2.27 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.90 7.11 -2.39 -0.02 1.89 16 39 H 0.08 1.17 6.48 -2.39 -0.02 1.16 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.15 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.43 5.92 8.78 -92.71 -0.81 5.11 16 44 H 0.10 1.66 7.14 -2.39 -0.02 1.64 16 45 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -73.26 363.57 -2.84 -76.11 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.21 Total: 10.92 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.58 Total: 8.25 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.15 Total: -124.07 kcal Atomic # 8 Polarization: -105.97 SS G_CDS: -4.17 Total: -110.14 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 95.53 SS G_CDS: -0.34 Total: 95.19 kcal Total: -73.26 -2.84 -76.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413391191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.593 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds