Wall clock time and date at job start Wed Apr 1 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47389 * 2 1 4 4 C 1.50704 * 109.47416 * 239.99984 * 2 1 3 5 5 H 1.08002 * 119.99846 * 275.00592 * 4 2 1 6 6 C 1.37878 * 119.99962 * 95.00296 * 4 2 1 7 7 N 1.31509 * 119.99647 * 184.91537 * 6 4 2 8 8 Si 1.86797 * 119.99985 * 4.91191 * 6 4 2 9 9 H 1.48503 * 109.47129 * 84.82761 * 8 6 4 10 10 H 1.48497 * 109.47221 * 204.82776 * 8 6 4 11 11 H 1.48498 * 109.47157 * 324.83003 * 8 6 4 12 12 N 1.46505 * 109.47096 * 120.00181 * 2 1 3 13 13 C 1.46498 * 119.99993 * 59.99631 * 12 2 1 14 14 S 1.65595 * 120.00040 * 240.00269 * 12 2 1 15 15 O 1.42107 * 106.40397 * 336.45571 * 14 12 2 16 16 O 1.42097 * 106.40303 * 203.53690 * 14 12 2 17 17 N 1.65593 * 107.22155 * 89.99449 * 14 12 2 18 18 C 1.46827 * 120.38392 * 269.72657 * 17 14 12 19 19 C 1.53853 * 109.04806 * 127.74414 * 18 17 14 20 20 C 1.52762 * 108.65556 * 53.98909 * 19 18 17 21 21 H 1.08999 * 109.12829 * 57.04948 * 20 19 18 22 22 O 1.42749 * 111.21558 * 177.81380 * 20 19 18 23 23 C 1.43110 * 112.67429 * 188.40061 * 22 20 19 24 24 C 1.50248 * 110.47183 * 312.94281 * 23 22 20 25 25 O 1.21283 * 118.62260 * 194.04206 * 24 23 22 26 26 N 1.34154 * 122.76229 * 14.05524 * 24 23 22 27 27 C 1.45737 * 121.58302 * 356.83827 * 26 24 23 28 28 H 1.09000 * 108.52387 * 262.80658 * 27 26 24 29 29 C 1.47165 * 120.38172 * 89.99991 * 17 14 12 30 30 H 1.09001 * 109.47292 * 294.93112 * 1 2 3 31 31 H 1.09004 * 109.46438 * 54.92836 * 1 2 3 32 32 H 1.08992 * 109.47487 * 174.92883 * 1 2 3 33 33 H 0.97000 * 119.99595 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47194 * 270.00199 * 13 12 2 35 35 H 1.09009 * 109.46954 * 30.00144 * 13 12 2 36 36 H 1.08999 * 109.47312 * 150.00588 * 13 12 2 37 37 H 1.09007 * 109.49999 * 247.75173 * 18 17 14 38 38 H 1.08996 * 109.50206 * 7.85443 * 18 17 14 39 39 H 1.09000 * 109.74854 * 294.16809 * 19 18 17 40 40 H 1.09005 * 109.64340 * 173.74151 * 19 18 17 41 41 H 1.08998 * 109.30457 * 73.24924 * 23 22 20 42 42 H 1.09004 * 109.30728 * 192.83888 * 23 22 20 43 43 H 0.97001 * 119.20644 * 176.83486 * 26 24 23 44 44 H 1.09007 * 109.74083 * 352.70912 * 29 17 14 45 45 H 1.09001 * 109.74423 * 113.36984 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7819 10 1 2.1060 2.3991 -3.6928 11 1 1.1985 2.3274 -1.4452 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1829 1.5749 16 8 3.7117 -0.8790 2.9815 17 7 1.9606 0.8090 3.3998 18 6 1.4456 2.1677 3.1892 19 6 -0.0864 2.1514 3.3300 20 6 -0.4467 1.5267 4.6767 21 1 0.0388 2.0904 5.4733 22 8 -1.8587 1.5300 4.8864 23 6 -2.2205 1.1303 6.2121 24 6 -1.4748 -0.1126 6.6081 25 8 -1.8475 -0.7273 7.5849 26 7 -0.4140 -0.5709 5.9267 27 6 0.0473 0.0778 4.7059 28 1 -0.3646 -0.4592 3.8515 29 6 1.5740 0.0740 4.6147 30 1 -0.3634 0.4332 0.9319 31 1 -0.3632 0.5905 -0.8411 32 1 -0.3634 -1.0235 -0.0908 33 1 2.9372 -0.1048 -4.2552 34 1 0.7375 -2.1444 1.9993 35 1 1.5294 -2.5969 0.4707 36 1 2.4627 -2.5820 1.9864 37 1 1.8754 2.8390 3.9328 38 1 1.7169 2.5090 2.1903 39 1 -0.5240 1.5616 2.5246 40 1 -0.4693 3.1711 3.2861 41 1 -1.9789 1.9328 6.9090 42 1 -3.2916 0.9314 6.2489 43 1 0.0574 -1.3527 6.2545 44 1 1.9368 -0.9522 4.5554 45 1 1.9971 0.5639 5.4917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463838378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:19 Heat of formation + Delta-G solvation = -138.122763 kcal Electronic energy + Delta-G solvation = -31365.147663 eV Core-core repulsion = 27124.089192 eV Total energy + Delta-G solvation = -4241.058470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.19179 -38.75169 -37.16065 -36.99967 -36.40003 -35.44584 -34.92806 -32.53354 -31.87610 -30.20907 -29.97741 -27.93056 -25.78999 -25.27511 -24.70738 -23.69094 -21.76224 -20.59698 -20.15126 -18.86439 -18.07028 -17.77387 -17.52129 -17.02548 -16.57501 -16.22185 -15.92639 -15.67810 -15.26946 -15.18868 -14.77860 -14.30861 -14.23517 -13.90597 -13.63088 -13.38074 -13.19122 -12.98517 -12.79604 -12.56191 -12.47651 -12.12074 -12.03225 -11.93395 -11.77088 -11.70490 -11.48161 -11.25889 -11.11737 -11.10650 -10.89621 -10.79984 -10.75096 -10.43555 -9.97816 -9.85846 -9.55319 -9.46207 -9.20197 -8.66776 -8.16829 -6.23470 -4.24451 0.86075 2.11181 2.60566 3.11968 3.19532 3.24980 3.30315 3.38488 3.80943 3.90020 4.10432 4.30940 4.38649 4.48585 4.58486 4.68819 4.77719 4.79272 4.94237 5.00565 5.08380 5.11321 5.22946 5.41255 5.48405 5.56285 5.56754 5.79901 5.83807 5.93635 6.02099 6.16096 6.28320 6.33208 6.37533 6.50101 6.53529 6.55390 6.80753 6.85922 7.09724 7.39592 7.56617 7.70627 8.35802 8.80692 9.37306 10.88317 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.003978 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.880508 B = 7036.165679 C = 7367.240309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.234 3.766 3 H 0.055 0.945 4 C -0.518 4.518 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.886 5.886 8 Si 0.866 3.134 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.981 5.981 13 C 0.094 3.906 14 S 2.766 3.234 15 O -0.969 6.969 16 O -0.987 6.987 17 N -1.010 6.010 18 C 0.122 3.878 19 C -0.127 4.127 20 C 0.081 3.919 21 H 0.071 0.929 22 O -0.362 6.362 23 C 0.049 3.951 24 C 0.493 3.507 25 O -0.546 6.546 26 N -0.712 5.712 27 C 0.093 3.907 28 H 0.095 0.905 29 C 0.120 3.880 30 H 0.026 0.974 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.132 0.868 43 H 0.405 0.595 44 H 0.101 0.899 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 5.546 16.960 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.131 3.869 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.523 5.523 8 Si 0.693 3.307 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.823 5.823 13 C -0.052 4.052 14 S 2.777 3.223 15 O -0.952 6.952 16 O -0.971 6.971 17 N -0.848 5.848 18 C -0.004 4.004 19 C -0.166 4.166 20 C 0.023 3.977 21 H 0.089 0.911 22 O -0.280 6.280 23 C -0.030 4.030 24 C 0.279 3.721 25 O -0.424 6.424 26 N -0.366 5.366 27 C -0.014 4.014 28 H 0.112 0.888 29 C -0.007 4.007 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.242 0.758 44 H 0.119 0.881 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.920 5.554 17.072 19.240 hybrid contribution -0.035 0.474 0.137 0.494 sum -6.956 6.028 17.208 19.515 Atomic orbital electron populations 1.22280 0.98104 1.01379 0.98868 1.19127 0.91263 0.93104 0.83389 0.92696 1.21122 1.44347 0.95969 0.94369 0.89972 1.25001 0.93807 0.98522 0.95279 1.69881 1.44527 1.36166 1.01741 0.87018 0.80116 0.86227 0.77367 1.18913 1.21198 1.18773 1.57998 1.69866 1.19904 1.34520 1.21347 0.98712 0.82138 1.02993 1.02645 0.74044 0.73231 0.72404 1.93601 1.73684 1.56052 1.71900 1.93531 1.69051 1.60022 1.74512 1.58636 1.67414 1.24329 1.34378 1.21521 0.92250 0.82675 1.03915 1.22065 0.96252 1.02824 0.95442 1.22298 0.81667 0.93861 0.99863 0.91085 1.88171 1.22387 1.88129 1.29321 1.22805 1.01492 0.93215 0.85513 1.21082 0.80686 0.87319 0.82966 1.90794 1.66213 1.57907 1.27445 1.45651 1.31395 1.32721 1.26845 1.22094 0.96196 0.95186 0.87964 0.88761 1.21482 0.92169 0.98500 0.88562 0.95484 0.92671 0.92797 0.92245 0.94514 0.89513 0.91654 0.90735 0.87894 0.89161 0.88894 0.88996 0.85056 0.75783 0.88127 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.10 37.16 0.34 -2.30 16 2 C 0.23 4.96 2.28 -69.08 -0.16 4.80 16 3 H 0.06 1.22 4.06 -51.93 -0.21 1.01 16 4 C -0.52 -13.39 8.72 -34.44 -0.30 -13.69 16 5 H 0.08 2.28 6.82 -52.49 -0.36 1.92 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 8 Si 0.87 20.59 26.99 -169.99 -4.59 16.01 16 9 H -0.26 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.26 -5.69 6.82 56.52 0.39 -5.30 16 12 N -0.98 -18.02 3.12 -115.85 -0.36 -18.38 16 13 C 0.09 1.49 9.81 59.85 0.59 2.08 16 14 S 2.77 48.58 6.09 -107.50 -0.65 47.92 16 15 O -0.97 -20.42 15.40 -57.17 -0.88 -21.30 16 16 O -0.99 -18.59 15.45 -57.17 -0.88 -19.47 16 17 N -1.01 -12.47 3.35 -113.17 -0.38 -12.85 16 18 C 0.12 1.28 6.38 -3.42 -0.02 1.26 16 19 C -0.13 -1.14 5.85 -26.41 -0.15 -1.30 16 20 C 0.08 0.71 2.38 -26.80 -0.06 0.64 16 21 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 22 O -0.36 -3.40 10.59 -35.23 -0.37 -3.77 16 23 C 0.05 0.39 6.95 35.79 0.25 0.64 16 24 C 0.49 5.15 7.81 -11.48 -0.09 5.06 16 25 O -0.55 -7.60 17.84 5.56 0.10 -7.50 16 26 N -0.71 -6.46 5.31 -54.58 -0.29 -6.75 16 27 C 0.09 0.84 3.16 -68.32 -0.22 0.63 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 C 0.12 1.17 6.03 -3.71 -0.02 1.15 16 30 H 0.03 0.39 6.48 -51.93 -0.34 0.06 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.50 6.56 -51.92 -0.34 1.16 16 36 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 37 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.10 1.24 7.11 -51.93 -0.37 0.87 16 39 H 0.09 0.93 6.48 -51.93 -0.34 0.59 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.40 3.30 8.80 -40.82 -0.36 2.94 16 44 H 0.10 0.99 7.14 -51.92 -0.37 0.62 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -33.93 362.91 -8.42 -42.36 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.41 Total: 2.20 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 0.05 Total: 1.02 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.26 Total: -62.93 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -2.04 Total: -52.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.59 Total: 16.01 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.65 Total: 47.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.93 -8.42 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463838378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.765 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds