Wall clock time and date at job start Wed Apr 1 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47389 * 2 1 4 4 C 1.50704 * 109.47416 * 239.99984 * 2 1 3 5 5 H 1.08002 * 119.99846 * 275.00592 * 4 2 1 6 6 C 1.37878 * 119.99962 * 95.00296 * 4 2 1 7 7 N 1.31509 * 119.99647 * 184.91537 * 6 4 2 8 8 Si 1.86797 * 119.99985 * 4.91191 * 6 4 2 9 9 H 1.48503 * 109.47129 * 84.82761 * 8 6 4 10 10 H 1.48497 * 109.47221 * 204.82776 * 8 6 4 11 11 H 1.48498 * 109.47157 * 324.83003 * 8 6 4 12 12 N 1.46505 * 109.47096 * 120.00181 * 2 1 3 13 13 C 1.46498 * 119.99993 * 59.99631 * 12 2 1 14 14 S 1.65595 * 120.00040 * 240.00269 * 12 2 1 15 15 O 1.42107 * 106.40397 * 336.45571 * 14 12 2 16 16 O 1.42097 * 106.40303 * 203.53690 * 14 12 2 17 17 N 1.65593 * 107.22155 * 89.99449 * 14 12 2 18 18 C 1.46827 * 120.38392 * 269.72657 * 17 14 12 19 19 C 1.53853 * 109.04806 * 127.74414 * 18 17 14 20 20 C 1.52762 * 108.65556 * 53.98909 * 19 18 17 21 21 H 1.08999 * 109.12829 * 57.04948 * 20 19 18 22 22 O 1.42749 * 111.21558 * 177.81380 * 20 19 18 23 23 C 1.43110 * 112.67429 * 188.40061 * 22 20 19 24 24 C 1.50248 * 110.47183 * 312.94281 * 23 22 20 25 25 O 1.21283 * 118.62260 * 194.04206 * 24 23 22 26 26 N 1.34154 * 122.76229 * 14.05524 * 24 23 22 27 27 C 1.45737 * 121.58302 * 356.83827 * 26 24 23 28 28 H 1.09000 * 108.52387 * 262.80658 * 27 26 24 29 29 C 1.47165 * 120.38172 * 89.99991 * 17 14 12 30 30 H 1.09001 * 109.47292 * 294.93112 * 1 2 3 31 31 H 1.09004 * 109.46438 * 54.92836 * 1 2 3 32 32 H 1.08992 * 109.47487 * 174.92883 * 1 2 3 33 33 H 0.97000 * 119.99595 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47194 * 270.00199 * 13 12 2 35 35 H 1.09009 * 109.46954 * 30.00144 * 13 12 2 36 36 H 1.08999 * 109.47312 * 150.00588 * 13 12 2 37 37 H 1.09007 * 109.49999 * 247.75173 * 18 17 14 38 38 H 1.08996 * 109.50206 * 7.85443 * 18 17 14 39 39 H 1.09000 * 109.74854 * 294.16809 * 19 18 17 40 40 H 1.09005 * 109.64340 * 173.74151 * 19 18 17 41 41 H 1.08998 * 109.30457 * 73.24924 * 23 22 20 42 42 H 1.09004 * 109.30728 * 192.83888 * 23 22 20 43 43 H 0.97001 * 119.20644 * 176.83486 * 26 24 23 44 44 H 1.09007 * 109.74083 * 352.70912 * 29 17 14 45 45 H 1.09001 * 109.74423 * 113.36984 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7819 10 1 2.1060 2.3991 -3.6928 11 1 1.1985 2.3274 -1.4452 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 3.5794 1.1829 1.5749 16 8 3.7117 -0.8790 2.9815 17 7 1.9606 0.8090 3.3998 18 6 1.4456 2.1677 3.1892 19 6 -0.0864 2.1514 3.3300 20 6 -0.4467 1.5267 4.6767 21 1 0.0388 2.0904 5.4733 22 8 -1.8587 1.5300 4.8864 23 6 -2.2205 1.1303 6.2121 24 6 -1.4748 -0.1126 6.6081 25 8 -1.8475 -0.7273 7.5849 26 7 -0.4140 -0.5709 5.9267 27 6 0.0473 0.0778 4.7059 28 1 -0.3646 -0.4592 3.8515 29 6 1.5740 0.0740 4.6147 30 1 -0.3634 0.4332 0.9319 31 1 -0.3632 0.5905 -0.8411 32 1 -0.3634 -1.0235 -0.0908 33 1 2.9372 -0.1048 -4.2552 34 1 0.7375 -2.1444 1.9993 35 1 1.5294 -2.5969 0.4707 36 1 2.4627 -2.5820 1.9864 37 1 1.8754 2.8390 3.9328 38 1 1.7169 2.5090 2.1903 39 1 -0.5240 1.5616 2.5246 40 1 -0.4693 3.1711 3.2861 41 1 -1.9789 1.9328 6.9090 42 1 -3.2916 0.9314 6.2489 43 1 0.0574 -1.3527 6.2545 44 1 1.9368 -0.9522 4.5554 45 1 1.9971 0.5639 5.4917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463838378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:18 Heat of formation + Delta-G solvation = -167.299198 kcal Electronic energy + Delta-G solvation = -31366.412848 eV Core-core repulsion = 27124.089192 eV Total energy + Delta-G solvation = -4242.323655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91945 -39.58329 -38.49103 -37.99486 -37.89015 -36.94344 -35.72381 -34.48056 -32.67321 -31.65235 -30.92024 -28.59670 -27.28688 -27.01601 -25.51067 -24.45418 -22.78811 -22.02875 -20.84894 -19.97218 -19.29808 -19.15835 -18.64079 -18.20133 -17.94413 -17.35209 -16.72609 -16.62437 -16.35533 -16.02645 -15.87267 -15.50576 -15.29371 -15.08314 -14.72772 -14.57865 -14.48291 -14.35687 -13.97730 -13.91509 -13.57105 -13.49533 -13.32081 -13.08762 -13.04793 -12.89489 -12.82827 -12.69685 -12.54734 -12.42049 -12.05832 -11.89222 -11.87203 -11.74141 -11.53218 -11.24394 -10.77531 -10.68727 -10.32661 -10.09088 -9.67175 -8.30464 -6.34311 -0.48739 1.32859 1.35273 1.43617 1.45042 1.75451 2.09668 2.34381 2.46821 2.53981 3.08947 3.18503 3.23901 3.48703 3.62341 3.79539 3.90278 4.01323 4.08528 4.22148 4.23949 4.36317 4.47117 4.48828 4.52334 4.64242 4.68914 4.77234 4.80980 4.86472 4.88045 4.95012 5.05173 5.14401 5.24770 5.34037 5.43817 5.52103 5.59994 5.62879 5.88403 5.98589 6.08949 6.34861 6.72765 6.96391 7.31428 8.85335 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.003978 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.880508 B = 7036.165679 C = 7367.240309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.239 3.761 3 H 0.049 0.951 4 C -0.519 4.519 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.940 5.940 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.224 1.224 12 N -0.992 5.992 13 C 0.093 3.907 14 S 2.783 3.217 15 O -1.007 7.007 16 O -1.004 7.004 17 N -0.998 5.998 18 C 0.113 3.887 19 C -0.121 4.121 20 C 0.080 3.920 21 H 0.092 0.908 22 O -0.370 6.370 23 C 0.051 3.949 24 C 0.491 3.509 25 O -0.587 6.587 26 N -0.705 5.705 27 C 0.098 3.902 28 H 0.088 0.912 29 C 0.117 3.883 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.408 0.592 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 7.631 19.710 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.134 3.866 3 H 0.067 0.933 4 C -0.559 4.559 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.580 5.580 8 Si 0.736 3.264 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.147 1.147 12 N -0.833 5.833 13 C -0.053 4.053 14 S 2.794 3.206 15 O -0.991 6.991 16 O -0.988 6.988 17 N -0.839 5.839 18 C -0.011 4.011 19 C -0.160 4.160 20 C 0.022 3.978 21 H 0.110 0.890 22 O -0.289 6.289 23 C -0.028 4.028 24 C 0.279 3.721 25 O -0.468 6.468 26 N -0.358 5.358 27 C -0.009 4.009 28 H 0.106 0.894 29 C -0.010 4.010 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.161 0.839 43 H 0.245 0.755 44 H 0.117 0.883 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.660 7.624 19.805 22.921 hybrid contribution 0.530 -0.266 -0.552 0.810 sum -8.131 7.357 19.253 22.157 Atomic orbital electron populations 1.22139 0.95273 1.01781 1.00737 1.18938 0.93226 0.92129 0.82316 0.93308 1.21474 1.43171 0.94836 0.96422 0.93371 1.25776 0.94157 1.02848 0.95086 1.70020 1.47543 1.37792 1.02636 0.86257 0.80674 0.81303 0.78148 1.20413 1.20838 1.14678 1.57736 1.69989 1.21004 1.34613 1.21449 1.00660 0.80757 1.02401 1.01753 0.73994 0.72452 0.72406 1.93552 1.75038 1.57168 1.73298 1.93507 1.69867 1.60781 1.74625 1.58137 1.66943 1.25052 1.33775 1.21795 0.93566 0.81587 1.04158 1.22009 0.94761 1.03999 0.95227 1.22351 0.81694 0.93382 1.00353 0.89045 1.88166 1.22608 1.88059 1.30017 1.22931 1.01750 0.92624 0.85455 1.21550 0.80592 0.87662 0.82273 1.90783 1.67380 1.59317 1.29307 1.45632 1.31030 1.32628 1.26549 1.22025 0.95505 0.95826 0.87575 0.89397 1.21699 0.92821 0.98533 0.87907 0.91579 0.93189 0.92820 0.92461 0.90738 0.91756 0.91278 0.87759 0.89444 0.90322 0.86722 0.86553 0.83949 0.75454 0.88257 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.10 71.98 0.65 -4.06 16 2 C 0.24 9.89 2.28 44.24 0.10 9.99 16 3 H 0.05 2.10 4.06 -2.39 -0.01 2.09 16 4 C -0.52 -27.55 8.72 25.60 0.22 -27.33 16 5 H 0.05 2.81 6.82 -2.91 -0.02 2.79 16 6 C 0.02 1.14 5.47 84.66 0.46 1.61 16 7 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 8 Si 0.91 42.42 26.99 68.60 1.85 44.27 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.22 -8.91 6.82 99.48 0.68 -8.23 16 12 N -0.99 -35.50 3.12 -520.42 -1.62 -37.12 16 13 C 0.09 2.86 9.81 127.77 1.25 4.12 16 14 S 2.78 93.81 6.09 -56.49 -0.34 93.47 16 15 O -1.01 -41.68 15.40 -128.00 -1.97 -43.66 16 16 O -1.00 -36.63 15.45 -128.00 -1.98 -38.61 16 17 N -1.00 -21.53 3.35 -511.97 -1.71 -23.24 16 18 C 0.11 1.95 6.38 86.60 0.55 2.50 16 19 C -0.12 -1.64 5.85 30.80 0.18 -1.46 16 20 C 0.08 1.03 2.38 30.55 0.07 1.10 16 21 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 22 O -0.37 -5.37 10.59 -148.98 -1.58 -6.95 16 23 C 0.05 0.63 6.95 71.09 0.49 1.13 16 24 C 0.49 8.89 7.81 87.61 0.68 9.58 16 25 O -0.59 -15.34 17.84 -3.04 -0.05 -15.39 16 26 N -0.71 -10.67 5.31 -445.33 -2.37 -13.04 16 27 C 0.10 1.42 3.16 45.15 0.14 1.56 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 C 0.12 1.85 6.03 86.23 0.52 2.37 16 30 H 0.07 1.71 6.48 -2.39 -0.02 1.69 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.27 6.56 -2.38 -0.02 2.25 16 36 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 37 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.85 7.11 -2.39 -0.02 1.83 16 39 H 0.08 1.27 6.48 -2.39 -0.02 1.26 16 40 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.14 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.41 5.65 8.80 -92.71 -0.82 4.83 16 44 H 0.10 1.65 7.14 -2.38 -0.02 1.64 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.83 362.91 -3.95 -80.78 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.19 Total: 15.02 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.34 Total: 1.11 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.40 Total: -130.05 kcal Atomic # 8 Polarization: -99.03 SS G_CDS: -5.58 Total: -104.61 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.85 Total: 44.27 kcal Atomic # 16 Polarization: 93.81 SS G_CDS: -0.34 Total: 93.47 kcal Total: -76.83 -3.95 -80.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463838378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.517 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds