Wall clock time and date at job start Wed Apr 1 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47058 * 2 1 4 4 C 1.50690 * 109.47401 * 120.00604 * 2 1 3 5 5 H 1.07995 * 120.00256 * 119.99630 * 4 2 1 6 6 C 1.37878 * 119.99847 * 299.99662 * 4 2 1 7 7 N 1.31516 * 120.00150 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99751 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47561 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46873 * 120.00336 * 8 6 4 11 11 H 1.48507 * 109.46973 * 239.99781 * 8 6 4 12 12 N 1.46503 * 109.46501 * 240.00898 * 2 1 3 13 13 C 1.46502 * 119.99782 * 299.99166 * 12 2 1 14 14 S 1.65595 * 120.00147 * 120.00332 * 12 2 1 15 15 O 1.42098 * 106.40286 * 156.45542 * 14 12 2 16 16 O 1.42093 * 106.40359 * 23.53243 * 14 12 2 17 17 N 1.65603 * 107.21440 * 269.99148 * 14 12 2 18 18 C 1.46832 * 120.38884 * 269.97556 * 17 14 12 19 19 C 1.53397 * 109.30634 * 127.82898 * 18 17 14 20 20 C 1.52768 * 108.74141 * 53.73338 * 19 18 17 21 21 H 1.08996 * 109.14949 * 57.22029 * 20 19 18 22 22 O 1.42755 * 111.20425 * 178.00161 * 20 19 18 23 23 C 1.43112 * 112.67718 * 188.34850 * 22 20 19 24 24 C 1.50245 * 110.31760 * 313.05047 * 23 22 20 25 25 O 1.21285 * 118.62032 * 193.93965 * 24 23 22 26 26 N 1.33750 * 123.05297 * 13.91597 * 24 23 22 27 27 C 1.45735 * 121.46938 * 356.97229 * 26 24 23 28 28 H 1.09000 * 108.49946 * 262.74719 * 27 26 24 29 29 C 1.47166 * 120.38911 * 90.00133 * 17 14 12 30 30 H 1.08998 * 109.46514 * 299.99572 * 1 2 3 31 31 H 1.09000 * 109.47477 * 59.99242 * 1 2 3 32 32 H 1.08995 * 109.47058 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99469 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.47482 * 270.00930 * 13 12 2 35 35 H 1.08995 * 109.47131 * 30.00744 * 13 12 2 36 36 H 1.09000 * 109.47289 * 150.00674 * 13 12 2 37 37 H 1.08996 * 109.49833 * 247.77842 * 18 17 14 38 38 H 1.08994 * 109.50028 * 7.88191 * 18 17 14 39 39 H 1.09002 * 109.59392 * 293.95604 * 19 18 17 40 40 H 1.09001 * 109.59547 * 173.50977 * 19 18 17 41 41 H 1.09002 * 109.30081 * 73.25783 * 23 22 20 42 42 H 1.08998 * 109.30052 * 192.83924 * 23 22 20 43 43 H 0.97004 * 119.32082 * 176.89185 * 26 24 23 44 44 H 1.09001 * 109.74770 * 113.40473 * 29 17 14 45 45 H 1.09002 * 109.78531 * 352.71447 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3228 -1.1198 4.0077 9 1 3.1486 -2.2859 3.6035 10 1 3.1475 -0.1861 4.8159 11 1 1.1681 -1.5869 4.8164 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1144 -2.2863 15 8 3.7116 -0.8787 -2.9817 16 8 3.5793 1.1830 -1.5749 17 7 1.9605 0.8093 -3.3998 18 6 1.5751 0.0764 -4.6124 19 6 0.0468 0.0815 -4.7438 20 6 -0.4467 1.5258 -4.6784 21 1 0.0374 2.1050 -5.4647 22 8 -1.8631 1.5955 -4.8421 23 6 -2.3375 2.9389 -4.9770 24 6 -1.7244 3.8170 -3.9232 25 8 -2.2039 4.9142 -3.7301 26 7 -0.6725 3.4453 -3.1854 27 6 -0.0838 2.1184 -3.3141 28 1 -0.4893 1.4823 -2.5272 29 6 1.4393 2.1689 -3.1859 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.7090 1.1610 3.4845 34 1 2.4157 -2.7377 -0.9719 35 1 0.6904 -2.3001 -0.9849 36 1 1.6236 -2.2851 -2.5004 37 1 2.0169 0.5582 -5.4845 38 1 1.9309 -0.9516 -4.5447 39 1 -0.3923 -0.4920 -3.9274 40 1 -0.2395 -0.3596 -5.6985 41 1 -2.0694 3.3185 -5.9630 42 1 -3.4221 2.9505 -4.8693 43 1 -0.2917 4.0727 -2.5512 44 1 1.8500 2.8432 -3.9374 45 1 1.7137 2.5167 -2.1900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463838381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:47:24 Heat of formation + Delta-G solvation = -138.743896 kcal Electronic energy + Delta-G solvation = -31372.052999 eV Core-core repulsion = 27130.967595 eV Total energy + Delta-G solvation = -4241.085405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07590 -38.62388 -37.06311 -36.92252 -36.25545 -35.38654 -34.78892 -32.65261 -31.81015 -30.06898 -29.16838 -27.80664 -25.70707 -25.22786 -24.61717 -23.58098 -21.67142 -20.67802 -20.01732 -18.79622 -17.98409 -17.62316 -17.06138 -16.90279 -16.43623 -15.99215 -15.87006 -15.52357 -15.18652 -15.00693 -14.78116 -14.31909 -14.08869 -13.77118 -13.58326 -13.38664 -13.09575 -12.89480 -12.83109 -12.45775 -12.11154 -11.91261 -11.86218 -11.78146 -11.63873 -11.41876 -11.31377 -11.10512 -11.03991 -11.02977 -10.86526 -10.67795 -10.53879 -10.35006 -10.10877 -9.80664 -9.40400 -9.34499 -9.05099 -8.52121 -8.06463 -6.13867 -4.20463 0.94937 2.29516 2.77322 3.21859 3.24161 3.31464 3.32927 3.36909 3.89992 4.03133 4.25375 4.35327 4.48346 4.61671 4.65731 4.80523 4.86680 4.87807 5.01422 5.10130 5.16535 5.18793 5.36180 5.45704 5.49254 5.54448 5.70385 5.87016 5.90227 6.05737 6.26716 6.31561 6.43747 6.54652 6.67008 6.69646 6.73196 6.91148 7.01884 7.35424 7.54604 7.70742 7.89665 7.96217 8.19732 8.82155 9.46085 10.91754 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.004361 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.391450 B = 6418.549998 C = 7645.039641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.988 5.988 13 C 0.110 3.890 14 S 2.775 3.225 15 O -0.989 6.989 16 O -0.968 6.968 17 N -1.009 6.009 18 C 0.123 3.877 19 C -0.123 4.123 20 C 0.081 3.919 21 H 0.070 0.930 22 O -0.363 6.363 23 C 0.051 3.949 24 C 0.491 3.509 25 O -0.549 6.549 26 N -0.707 5.707 27 C 0.089 3.911 28 H 0.100 0.900 29 C 0.119 3.881 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.408 0.592 44 H 0.077 0.923 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -0.314 -16.843 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.074 0.926 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.037 4.037 14 S 2.785 3.215 15 O -0.973 6.973 16 O -0.952 6.952 17 N -0.847 5.847 18 C -0.002 4.002 19 C -0.162 4.162 20 C 0.023 3.977 21 H 0.088 0.912 22 O -0.282 6.282 23 C -0.028 4.028 24 C 0.277 3.723 25 O -0.427 6.427 26 N -0.361 5.361 27 C -0.018 4.018 28 H 0.118 0.882 29 C -0.008 4.008 30 H 0.111 0.889 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.245 0.755 44 H 0.096 0.904 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.699 0.114 -16.760 17.164 hybrid contribution 0.116 -0.001 1.254 1.260 sum -3.584 0.114 -15.506 15.915 Atomic orbital electron populations 1.22163 0.98203 0.99850 1.00481 1.18741 0.91245 0.92869 0.80595 0.92550 1.21345 1.31625 1.13054 0.89945 0.91866 1.24903 0.94898 0.94984 0.99039 1.69854 1.36497 1.22712 1.23781 0.86446 0.78634 0.79690 0.82680 1.19708 1.20889 1.20969 1.57769 1.69954 1.19861 1.35523 1.21161 1.01866 0.81964 0.98693 1.02225 0.73844 0.73158 0.72259 1.93543 1.68886 1.60155 1.74667 1.93605 1.73732 1.55930 1.71922 1.58589 1.67162 1.23848 1.35069 1.21397 0.93546 0.97820 0.87463 1.21918 0.95664 0.94017 1.04648 1.22290 0.81769 0.98656 0.95000 0.91183 1.88145 1.21573 1.24832 1.93618 1.22792 1.01491 0.81566 0.96984 1.20948 0.80316 0.88094 0.82917 1.90792 1.61084 1.22502 1.68307 1.45551 1.32130 1.16406 1.42008 1.22171 0.95099 0.84438 1.00102 0.88197 1.21511 0.91083 0.83808 1.04365 0.88850 0.97185 0.94628 0.92695 0.93170 0.90868 0.93368 0.90903 0.88199 0.89507 0.89053 0.89120 0.85100 0.75459 0.90448 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.95 37.16 0.33 -2.76 16 2 C 0.27 6.08 2.62 -69.08 -0.18 5.90 16 3 H 0.06 1.42 6.91 -51.93 -0.36 1.06 16 4 C -0.52 -13.40 8.37 -34.44 -0.29 -13.69 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.99 -18.66 3.12 -115.85 -0.36 -19.02 16 13 C 0.11 1.76 9.53 59.85 0.57 2.34 16 14 S 2.78 49.29 6.04 -107.50 -0.65 48.64 16 15 O -0.99 -18.55 15.91 -57.17 -0.91 -19.46 16 16 O -0.97 -20.74 15.41 -57.17 -0.88 -21.62 16 17 N -1.01 -12.97 3.36 -113.44 -0.38 -13.35 16 18 C 0.12 1.18 6.35 -3.66 -0.02 1.16 16 19 C -0.12 -1.05 5.84 -26.64 -0.16 -1.20 16 20 C 0.08 0.77 2.38 -26.79 -0.06 0.71 16 21 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 22 O -0.36 -3.73 10.59 -35.23 -0.37 -4.10 16 23 C 0.05 0.47 6.97 35.79 0.25 0.72 16 24 C 0.49 6.08 7.79 -11.66 -0.09 5.99 16 25 O -0.55 -8.73 17.83 5.55 0.10 -8.63 16 26 N -0.71 -8.24 5.30 -54.68 -0.29 -8.53 16 27 C 0.09 1.00 3.15 -68.32 -0.22 0.79 16 28 H 0.10 1.31 6.28 -51.93 -0.33 0.99 16 29 C 0.12 1.42 6.03 -3.71 -0.02 1.40 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.01 0.17 6.28 -51.93 -0.33 -0.16 16 32 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 36 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.96 7.12 -51.93 -0.37 0.59 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.41 4.65 8.79 -40.82 -0.36 4.29 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.11 1.44 7.14 -51.93 -0.37 1.07 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -33.01 363.52 -9.07 -42.08 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.42 Total: 3.28 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.02 Total: 2.94 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.40 Total: -64.23 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.07 Total: -53.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 49.29 SS G_CDS: -0.65 Total: 48.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.01 -9.07 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463838381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.662 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds