Wall clock time and date at job start Wed Apr 1 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 110.53609 * 2 1 4 4 C 1.51584 * 110.60027 * 237.00447 * 2 1 3 5 5 O 1.21242 * 127.15677 * 61.42435 * 4 2 1 6 6 N 1.34765 * 105.68597 * 241.47162 * 4 2 1 7 7 N 1.40103 * 124.17703 * 180.02562 * 6 4 2 8 8 C 1.34779 * 119.99690 * 254.98426 * 7 6 4 9 9 O 1.21282 * 120.00429 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.47139 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96857 * 89.99874 * 11 10 8 13 13 C 1.38278 * 120.13864 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06908 * 359.97438 * 13 12 11 15 15 C 1.38857 * 119.93254 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06918 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00196 * 354.46289 * 16 15 14 18 18 H 1.07997 * 119.99768 * 5.05389 * 17 16 15 19 19 C 1.38661 * 120.00140 * 185.05419 * 17 16 15 20 20 N 1.31559 * 119.99626 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46915 * 90.00408 * 21 19 17 23 23 H 1.48499 * 109.47205 * 210.00324 * 21 19 17 24 24 H 1.48497 * 109.47344 * 330.00423 * 21 19 17 25 25 C 1.38082 * 119.96425 * 269.72441 * 11 10 8 26 26 C 1.33790 * 111.64505 * 0.02562 * 6 4 2 27 27 O 1.21542 * 123.77059 * 180.02562 * 26 6 4 28 28 N 1.34524 * 112.45779 * 359.97438 * 26 6 4 29 29 C 1.46497 * 126.68953 * 180.02562 * 28 26 6 30 30 H 1.09001 * 109.47098 * 297.16591 * 1 2 3 31 31 H 1.08999 * 109.47559 * 57.17084 * 1 2 3 32 32 H 1.09004 * 109.47170 * 177.16591 * 1 2 3 33 33 H 0.96997 * 120.00145 * 74.98231 * 7 6 4 34 34 H 1.09005 * 109.47073 * 300.00348 * 10 8 7 35 35 H 1.08996 * 109.47250 * 59.99819 * 10 8 7 36 36 H 1.07995 * 119.92757 * 0.02562 * 12 11 10 37 37 H 1.07996 * 119.96627 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.03728 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99452 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.03032 * 0.02562 * 25 11 10 41 41 H 1.09004 * 109.47557 * 269.96128 * 29 28 26 42 42 H 1.08996 * 109.47582 * 29.96294 * 29 28 26 43 43 H 1.09004 * 109.46975 * 149.96517 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8883 -0.5228 -2.3635 6 7 2.7715 -1.7958 -0.6725 7 7 3.4381 -2.7595 -1.4404 8 6 2.9260 -4.0009 -1.5563 9 8 1.8880 -4.2835 -0.9963 10 6 3.6433 -5.0377 -2.3819 11 6 2.8684 -6.3298 -2.3494 12 6 1.8972 -6.5773 -3.3028 13 6 1.1844 -7.7619 -3.2766 14 6 1.4407 -8.7023 -2.2980 15 6 2.4149 -8.4569 -1.3395 16 8 2.6695 -9.3794 -0.3767 17 6 1.8651 -10.4607 -0.3370 18 1 1.1144 -10.6035 -1.1002 19 6 2.0016 -11.3893 0.6836 20 7 2.9158 -11.2150 1.6135 21 14 0.8866 -12.8870 0.7389 22 1 1.5133 -13.9989 -0.0203 23 1 0.6858 -13.3028 2.1503 24 1 -0.4255 -12.5501 0.1307 25 6 3.1324 -7.2680 -1.3712 26 6 2.7594 -1.7774 0.6652 27 8 3.3286 -2.5986 1.3573 28 7 2.0479 -0.7479 1.1586 29 6 1.8308 -0.4319 2.5726 30 1 -0.3633 0.4692 0.9143 31 1 -0.3634 0.5571 -0.8635 32 1 -0.3634 -1.0264 -0.0508 33 1 4.2680 -2.5334 -1.8886 34 1 3.7252 -4.6894 -3.4115 35 1 4.6405 -5.2013 -1.9733 36 1 1.6959 -5.8440 -4.0697 37 1 0.4265 -7.9520 -4.0222 38 1 0.8840 -9.6275 -2.2783 39 1 3.0115 -11.8649 2.3272 40 1 3.8936 -7.0759 -0.6295 41 1 0.9313 -0.9375 2.9240 42 1 2.6879 -0.7681 3.1559 43 1 1.7114 0.6452 2.6899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470308244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:07 Heat of formation + Delta-G solvation = -27.046234 kcal Electronic energy + Delta-G solvation = -29975.115286 eV Core-core repulsion = 25603.429504 eV Total energy + Delta-G solvation = -4371.685782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.75565 -39.79150 -38.97367 -38.74785 -36.79297 -36.50507 -35.88917 -32.94139 -32.27041 -31.82669 -31.46916 -29.19040 -27.87354 -26.68961 -25.27273 -25.11836 -22.52858 -22.22147 -21.57693 -20.83760 -20.44291 -18.82772 -17.84586 -17.54375 -17.06729 -16.86951 -16.68059 -16.27747 -15.60948 -15.36329 -14.93281 -14.92726 -14.78420 -14.41068 -14.24327 -14.12565 -13.90254 -13.54099 -13.34178 -13.24251 -12.95950 -12.81704 -12.64986 -12.40275 -12.32498 -11.89788 -11.53986 -11.32284 -11.24096 -10.94492 -10.84069 -10.75463 -10.64364 -10.57855 -10.40276 -9.93127 -9.64747 -9.41550 -9.28745 -8.78316 -8.05278 -7.17397 -6.38250 -3.97280 0.87761 1.22945 2.12833 2.33497 2.43383 2.53524 2.72565 3.16605 3.17974 3.22855 3.31118 3.64345 4.01815 4.16499 4.31717 4.50721 4.54681 4.79187 4.99524 5.00861 5.05593 5.10506 5.15630 5.21196 5.27347 5.42625 5.45861 5.56804 5.64962 5.77423 5.93883 5.96854 5.98195 6.21028 6.38351 6.64394 6.68620 6.93985 6.98168 6.98417 7.11795 7.28406 7.40733 7.48812 7.69017 7.85960 8.06468 8.19309 9.07189 9.78071 10.79979 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002496 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.663043 B =11215.183121 C =12167.862544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 H 0.133 0.867 4 C 0.527 3.473 5 O -0.457 6.457 6 N -0.377 5.377 7 N -0.514 5.514 8 C 0.520 3.480 9 O -0.491 6.491 10 C -0.077 4.077 11 C -0.039 4.039 12 C -0.195 4.195 13 C -0.075 4.075 14 C -0.228 4.228 15 C 0.154 3.846 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.170 4.170 26 C 0.701 3.299 27 O -0.517 6.517 28 N -0.622 5.622 29 C 0.121 3.879 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.425 0.575 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.269 0.731 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 25.820 -4.250 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 H 0.150 0.850 4 C 0.313 3.687 5 O -0.324 6.324 6 N -0.210 5.210 7 N -0.267 5.267 8 C 0.306 3.694 9 O -0.359 6.359 10 C -0.118 4.118 11 C -0.040 4.040 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.248 4.248 15 C 0.101 3.899 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.189 4.189 26 C 0.402 3.598 27 O -0.387 6.387 28 N -0.364 5.364 29 C -0.020 4.020 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.267 0.733 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.981 25.098 -3.590 25.373 hybrid contribution -0.198 -0.610 -0.183 0.667 sum -1.179 24.489 -3.772 24.806 Atomic orbital electron populations 1.21990 0.90153 1.04570 1.04405 1.22120 0.98155 0.97740 0.82452 0.84995 1.21344 0.76640 0.80107 0.90578 1.90820 1.55894 1.69255 1.16433 1.45135 1.47859 1.22769 1.05284 1.45341 1.26129 1.05529 1.49715 1.21590 0.86028 0.80504 0.81232 1.90806 1.22688 1.77987 1.44419 1.20518 0.99811 0.91139 1.00379 1.18571 0.96980 0.92515 0.95945 1.20358 1.00703 0.98680 1.01625 1.20673 0.97891 0.93531 0.97225 1.21196 1.03364 1.01831 0.98378 1.19256 0.92449 0.89261 0.88962 1.83979 1.50929 1.28123 1.45178 1.21317 1.15388 0.98152 1.11873 0.89119 1.25284 0.97577 0.99022 0.94672 1.70050 1.31736 1.35597 1.12438 0.85718 0.79559 0.80180 0.77993 1.19908 1.20287 1.19222 1.19976 1.04497 0.93292 1.01125 1.15816 0.80534 0.82590 0.80820 1.91048 1.47572 1.40065 1.59994 1.47519 1.53752 1.28265 1.06865 1.21567 1.03128 1.01333 0.75923 0.89861 0.89558 0.90993 0.73306 0.87400 0.87230 0.87794 0.87389 0.85549 0.92087 0.86608 0.91667 0.89675 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.46 37.15 0.35 -0.53 16 2 C 0.10 0.72 4.05 -68.21 -0.28 0.44 16 3 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.53 5.76 7.85 -10.56 -0.08 5.67 16 5 O -0.46 -5.86 18.01 5.59 0.10 -5.76 16 6 N -0.38 -4.88 2.94 -15.79 -0.05 -4.93 16 7 N -0.51 -6.46 6.00 31.22 0.19 -6.28 16 8 C 0.52 8.25 7.88 -10.98 -0.09 8.17 16 9 O -0.49 -10.36 16.24 5.56 0.09 -10.27 16 10 C -0.08 -1.04 5.83 -29.03 -0.17 -1.21 16 11 C -0.04 -0.73 4.37 -104.65 -0.46 -1.19 16 12 C -0.19 -3.58 9.70 -39.53 -0.38 -3.96 16 13 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 14 C -0.23 -5.25 9.17 -39.40 -0.36 -5.62 16 15 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 16 O -0.18 -5.33 9.76 0.06 0.00 -5.33 16 17 C -0.39 -11.36 9.49 30.89 0.29 -11.07 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 21 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 C -0.17 -3.82 9.64 -39.39 -0.38 -4.20 16 26 C 0.70 9.71 8.22 -88.02 -0.72 8.99 16 27 O -0.52 -9.37 17.58 5.33 0.09 -9.27 16 28 N -0.62 -5.66 3.14 -180.28 -0.57 -6.23 16 29 C 0.12 0.71 10.99 59.85 0.66 1.36 16 30 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.42 3.51 8.83 -182.60 -1.61 1.90 16 34 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.88 5.64 -52.48 -0.30 2.59 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -41.34 382.22 -7.39 -48.74 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.38 Total: 3.11 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.37 Total: -0.32 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.33 Total: -42.85 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: 0.29 Total: -30.63 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.34 -7.39 -48.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470308244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.692 kcal (2) G-P(sol) polarization free energy of solvation -41.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds