Wall clock time and date at job start Wed Apr 1 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 110.53609 * 2 1 4 4 C 1.51584 * 110.60027 * 237.00447 * 2 1 3 5 5 O 1.21242 * 127.15677 * 61.42435 * 4 2 1 6 6 N 1.34765 * 105.68597 * 241.47162 * 4 2 1 7 7 N 1.40103 * 124.17703 * 180.02562 * 6 4 2 8 8 C 1.34779 * 119.99690 * 254.98426 * 7 6 4 9 9 O 1.21282 * 120.00429 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.47139 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96857 * 89.99874 * 11 10 8 13 13 C 1.38278 * 120.13864 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06908 * 359.97438 * 13 12 11 15 15 C 1.38857 * 119.93254 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06918 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00196 * 354.46289 * 16 15 14 18 18 H 1.07997 * 119.99768 * 5.05389 * 17 16 15 19 19 C 1.38661 * 120.00140 * 185.05419 * 17 16 15 20 20 N 1.31559 * 119.99626 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46915 * 90.00408 * 21 19 17 23 23 H 1.48499 * 109.47205 * 210.00324 * 21 19 17 24 24 H 1.48497 * 109.47344 * 330.00423 * 21 19 17 25 25 C 1.38082 * 119.96425 * 269.72441 * 11 10 8 26 26 C 1.33790 * 111.64505 * 0.02562 * 6 4 2 27 27 O 1.21542 * 123.77059 * 180.02562 * 26 6 4 28 28 N 1.34524 * 112.45779 * 359.97438 * 26 6 4 29 29 C 1.46497 * 126.68953 * 180.02562 * 28 26 6 30 30 H 1.09001 * 109.47098 * 297.16591 * 1 2 3 31 31 H 1.08999 * 109.47559 * 57.17084 * 1 2 3 32 32 H 1.09004 * 109.47170 * 177.16591 * 1 2 3 33 33 H 0.96997 * 120.00145 * 74.98231 * 7 6 4 34 34 H 1.09005 * 109.47073 * 300.00348 * 10 8 7 35 35 H 1.08996 * 109.47250 * 59.99819 * 10 8 7 36 36 H 1.07995 * 119.92757 * 0.02562 * 12 11 10 37 37 H 1.07996 * 119.96627 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.03728 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99452 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.03032 * 0.02562 * 25 11 10 41 41 H 1.09004 * 109.47557 * 269.96128 * 29 28 26 42 42 H 1.08996 * 109.47582 * 29.96294 * 29 28 26 43 43 H 1.09004 * 109.46975 * 149.96517 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8883 -0.5228 -2.3635 6 7 2.7715 -1.7958 -0.6725 7 7 3.4381 -2.7595 -1.4404 8 6 2.9260 -4.0009 -1.5563 9 8 1.8880 -4.2835 -0.9963 10 6 3.6433 -5.0377 -2.3819 11 6 2.8684 -6.3298 -2.3494 12 6 1.8972 -6.5773 -3.3028 13 6 1.1844 -7.7619 -3.2766 14 6 1.4407 -8.7023 -2.2980 15 6 2.4149 -8.4569 -1.3395 16 8 2.6695 -9.3794 -0.3767 17 6 1.8651 -10.4607 -0.3370 18 1 1.1144 -10.6035 -1.1002 19 6 2.0016 -11.3893 0.6836 20 7 2.9158 -11.2150 1.6135 21 14 0.8866 -12.8870 0.7389 22 1 1.5133 -13.9989 -0.0203 23 1 0.6858 -13.3028 2.1503 24 1 -0.4255 -12.5501 0.1307 25 6 3.1324 -7.2680 -1.3712 26 6 2.7594 -1.7774 0.6652 27 8 3.3286 -2.5986 1.3573 28 7 2.0479 -0.7479 1.1586 29 6 1.8308 -0.4319 2.5726 30 1 -0.3633 0.4692 0.9143 31 1 -0.3634 0.5571 -0.8635 32 1 -0.3634 -1.0264 -0.0508 33 1 4.2680 -2.5334 -1.8886 34 1 3.7252 -4.6894 -3.4115 35 1 4.6405 -5.2013 -1.9733 36 1 1.6959 -5.8440 -4.0697 37 1 0.4265 -7.9520 -4.0222 38 1 0.8840 -9.6275 -2.2783 39 1 3.0115 -11.8649 2.3272 40 1 3.8936 -7.0759 -0.6295 41 1 0.9313 -0.9375 2.9240 42 1 2.6879 -0.7681 3.1559 43 1 1.7114 0.6452 2.6899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470308244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:06 Heat of formation + Delta-G solvation = -58.976466 kcal Electronic energy + Delta-G solvation = -29976.499885 eV Core-core repulsion = 25603.429504 eV Total energy + Delta-G solvation = -4373.070381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.65746 -41.18470 -40.42072 -39.94124 -38.30537 -37.67009 -37.02984 -34.39818 -34.04710 -33.08676 -32.15462 -30.92774 -28.99824 -27.77103 -27.21243 -25.97037 -23.77391 -23.23549 -22.98840 -22.24426 -21.65618 -19.91916 -19.43321 -18.91900 -18.67349 -17.93480 -17.64819 -17.26741 -16.85779 -16.63111 -16.32411 -16.14251 -15.92406 -15.79995 -15.68185 -15.53444 -15.33686 -14.92825 -14.64111 -14.39478 -14.06478 -13.82569 -13.62870 -13.43636 -13.27316 -13.01034 -12.95599 -12.89184 -12.57137 -12.43102 -12.27231 -12.25791 -12.13039 -11.97902 -11.79076 -11.25656 -11.14724 -10.82066 -10.72215 -10.13954 -9.70615 -9.01737 -8.48688 -6.17708 -0.06897 0.36022 0.52974 0.72548 1.28384 1.32127 1.42556 1.50751 1.66573 1.73839 2.16101 2.40188 2.75320 2.84808 3.13403 3.37110 3.58922 3.63503 3.81471 3.92781 4.05426 4.06541 4.27358 4.35856 4.52834 4.54560 4.56846 4.65428 4.66768 4.70560 4.77867 4.88694 4.94862 5.01962 5.10129 5.13749 5.25710 5.25984 5.60610 5.68263 5.70595 5.77586 5.96737 6.00617 6.09582 6.20532 6.64905 6.95419 7.12352 7.76948 8.75085 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002496 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.663043 B =11215.183121 C =12167.862544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.113 3.887 3 H 0.185 0.815 4 C 0.522 3.478 5 O -0.477 6.477 6 N -0.388 5.388 7 N -0.504 5.504 8 C 0.520 3.480 9 O -0.555 6.555 10 C -0.074 4.074 11 C -0.032 4.032 12 C -0.176 4.176 13 C -0.073 4.073 14 C -0.243 4.243 15 C 0.111 3.889 16 O -0.235 6.235 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.022 2.978 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.190 4.190 26 C 0.688 3.312 27 O -0.575 6.575 28 N -0.609 5.609 29 C 0.112 3.888 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.445 0.555 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 29.224 -6.575 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 H 0.202 0.798 4 C 0.311 3.689 5 O -0.345 6.345 6 N -0.222 5.222 7 N -0.258 5.258 8 C 0.309 3.691 9 O -0.428 6.428 10 C -0.115 4.115 11 C -0.032 4.032 12 C -0.195 4.195 13 C -0.091 4.091 14 C -0.262 4.262 15 C 0.061 3.939 16 O -0.142 6.142 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.210 4.210 26 C 0.389 3.611 27 O -0.450 6.450 28 N -0.349 5.349 29 C -0.027 4.027 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.291 0.709 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.370 28.625 -5.986 29.340 hybrid contribution 0.242 -1.290 0.347 1.357 sum -2.128 27.335 -5.639 27.992 Atomic orbital electron populations 1.22043 0.88802 1.03094 1.06779 1.22506 0.98836 0.98789 0.79306 0.79837 1.22089 0.75800 0.79584 0.91444 1.90808 1.56504 1.69721 1.17516 1.45479 1.48391 1.22901 1.05405 1.45125 1.26624 1.05191 1.48844 1.21913 0.85195 0.81544 0.80486 1.90789 1.25546 1.79295 1.47178 1.20673 0.99526 0.87932 1.03349 1.19086 0.96710 0.93461 0.93992 1.20998 0.98454 0.98583 1.01441 1.21147 0.98413 0.92898 0.96624 1.21326 1.03023 1.02774 0.99092 1.19860 0.94564 0.89983 0.89485 1.83939 1.52837 1.29621 1.47791 1.21847 1.15918 0.98662 1.12720 0.88136 1.26663 0.99265 1.02508 0.93815 1.70206 1.34511 1.37549 1.13846 0.84557 0.77509 0.75463 0.78448 1.18354 1.19547 1.17767 1.20231 1.04607 0.93654 1.02485 1.16228 0.80838 0.83102 0.80897 1.91003 1.50339 1.42485 1.61199 1.47804 1.51884 1.26678 1.08579 1.21906 1.02490 1.04396 0.73919 0.86693 0.88057 0.94264 0.70885 0.82066 0.84785 0.83190 0.83430 0.86267 0.91834 0.87812 0.91642 0.91052 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.46 71.98 0.68 -0.56 16 2 C 0.11 1.18 4.05 44.37 0.18 1.36 16 3 H 0.18 0.19 8.14 -2.38 -0.02 0.17 16 4 C 0.52 10.36 7.85 87.94 0.69 11.05 16 5 O -0.48 -11.18 18.01 -2.91 -0.05 -11.23 16 6 N -0.39 -9.73 2.94 -441.12 -1.29 -11.02 16 7 N -0.50 -12.08 6.00 -173.53 -1.04 -13.12 16 8 C 0.52 16.01 7.88 87.66 0.69 16.70 16 9 O -0.55 -23.73 16.24 -3.04 -0.05 -23.78 16 10 C -0.07 -1.80 5.83 29.10 0.17 -1.63 16 11 C -0.03 -1.15 4.37 -19.88 -0.09 -1.23 16 12 C -0.18 -5.92 9.70 22.30 0.22 -5.70 16 13 C -0.07 -2.71 10.04 22.25 0.22 -2.48 16 14 C -0.24 -11.46 9.17 22.39 0.21 -11.25 16 15 C 0.11 6.04 6.65 22.58 0.15 6.19 16 16 O -0.23 -15.19 9.76 -22.70 -0.22 -15.41 16 17 C -0.42 -25.69 9.49 67.92 0.64 -25.05 16 18 H 0.10 5.71 5.20 -2.91 -0.02 5.70 16 19 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 20 N -0.92 -59.53 13.67 21.62 0.30 -59.24 16 21 Si 1.02 45.03 29.55 68.60 2.03 47.05 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 25 C -0.19 -8.97 9.64 22.39 0.22 -8.76 16 26 C 0.69 19.05 8.22 179.44 1.48 20.52 16 27 O -0.58 -21.83 17.58 -3.85 -0.07 -21.90 16 28 N -0.61 -9.98 3.14 -842.70 -2.65 -12.62 16 29 C 0.11 1.07 10.99 127.77 1.40 2.47 16 30 H 0.11 0.27 8.13 -2.39 -0.02 0.25 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.44 6.47 8.83 -213.32 -1.88 4.59 16 34 H 0.16 2.23 8.08 -2.38 -0.02 2.21 16 35 H 0.13 2.66 8.08 -2.39 -0.02 2.64 16 36 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 39 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 41 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.07 0.92 8.03 -2.39 -0.02 0.90 16 43 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -102.59 382.22 3.46 -99.12 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.81 Total: 21.58 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 7.32 Total: 0.57 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.69 Total: -96.00 kcal Atomic # 8 Polarization: -71.93 SS G_CDS: -0.39 Total: -72.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -102.59 3.46 -99.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470308244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.145 kcal (2) G-P(sol) polarization free energy of solvation -102.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds