Wall clock time and date at job start Wed Apr 1 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31612 * 120.00054 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99751 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47517 * 89.99708 * 9 7 5 11 11 H 1.48502 * 109.46736 * 209.99481 * 9 7 5 12 12 H 1.48496 * 109.47375 * 329.99177 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09002 * 110.88658 * 179.29983 * 13 2 1 15 15 C 1.55158 * 111.00472 * 303.18111 * 13 2 1 16 16 C 1.54328 * 102.94184 * 153.57476 * 15 13 2 17 17 N 1.47019 * 107.27104 * 337.81139 * 16 15 13 18 18 C 1.34777 * 125.65119 * 178.97689 * 17 16 15 19 19 O 1.21599 * 120.00366 * 179.97438 * 18 17 16 20 20 C 1.47402 * 119.99768 * 359.97040 * 18 17 16 21 21 C 1.37362 * 128.56084 * 359.67558 * 20 18 17 22 22 O 1.33500 * 106.33873 * 179.85826 * 21 20 18 23 23 N 1.20667 * 113.15357 * 0.45217 * 22 21 20 24 24 C 1.30009 * 112.30029 * 359.71903 * 23 22 21 25 25 C 1.50708 * 127.33393 * 179.97438 * 24 23 22 26 26 F 1.39894 * 109.46899 * 270.04398 * 25 24 23 27 27 F 1.39906 * 109.46875 * 30.04393 * 25 24 23 28 28 F 1.39899 * 109.47240 * 150.03833 * 25 24 23 29 29 C 1.47468 * 108.72259 * 358.96968 * 17 16 15 30 30 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 31 31 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 34 34 H 0.96998 * 120.00381 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.72222 * 271.93731 * 15 13 2 36 36 H 1.08993 * 110.72056 * 35.03735 * 15 13 2 37 37 H 1.09004 * 109.87844 * 97.22419 * 16 15 13 38 38 H 1.08994 * 109.88403 * 218.39014 * 16 15 13 39 39 H 1.07996 * 126.83663 * 0.02562 * 21 20 18 40 40 H 1.08998 * 110.35255 * 265.25506 * 29 17 16 41 41 H 1.09002 * 110.40265 * 142.91607 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.7532 -0.0014 -4.6387 9 14 3.0665 -2.4717 -3.4224 10 1 1.8709 -3.2897 -3.7486 11 1 4.1467 -2.7625 -4.3990 12 1 3.5349 -2.8039 -2.0529 13 6 2.0399 -0.7212 1.2493 14 1 3.1296 -0.7455 1.2665 15 6 1.4779 -0.0655 2.5383 16 6 1.4928 -1.2287 3.5525 17 7 1.4913 -2.4803 2.7812 18 6 1.5214 -3.7234 3.3011 19 8 1.5163 -4.6909 2.5644 20 6 1.5606 -3.9103 4.7627 21 6 1.5782 -2.9534 5.7480 22 8 1.6103 -3.6108 6.9095 23 7 1.6235 -4.8100 6.7756 24 6 1.5971 -5.1672 5.5259 25 6 1.6032 -6.5704 4.9761 26 9 2.9235 -6.9862 4.7737 27 9 0.9776 -7.4303 5.8853 28 9 0.9140 -6.5974 3.7589 29 6 1.4512 -2.1508 1.3444 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 3.0801 -0.4577 -5.4298 35 1 2.1251 0.7455 2.8722 36 1 0.4623 0.2953 2.3762 37 1 2.3913 -1.1731 4.1671 38 1 0.6056 -1.1813 4.1840 39 1 1.5656 -1.8823 5.6107 40 1 0.4235 -2.1628 0.9812 41 1 2.0633 -2.8516 0.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484340194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:28 Heat of formation + Delta-G solvation = -85.510498 kcal Electronic energy + Delta-G solvation = -31300.727382 eV Core-core repulsion = 26384.649659 eV Total energy + Delta-G solvation = -4916.077723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.43910 -48.01919 -47.85688 -45.86137 -40.42426 -38.20263 -35.57124 -34.86344 -33.27497 -32.35116 -30.94526 -29.36329 -28.34351 -27.54076 -25.83551 -24.20734 -23.46103 -22.49966 -21.70503 -20.73701 -19.22658 -19.07079 -19.02763 -18.61167 -18.29787 -18.00149 -17.50540 -16.68819 -16.46027 -15.90529 -14.95740 -14.86392 -14.81678 -14.73099 -14.43684 -14.31904 -14.14069 -14.02381 -13.97059 -13.94220 -13.27919 -13.11320 -12.91008 -12.83436 -12.55250 -12.51438 -12.39379 -11.99234 -11.42796 -11.35278 -11.18411 -10.97613 -10.67571 -10.62028 -10.49518 -10.46828 -10.29645 -10.02404 -9.62610 -9.00196 -8.88445 -7.34347 -5.81314 -3.17880 0.36026 0.64051 1.81347 2.06968 2.64758 2.72718 2.91096 3.23123 3.36981 3.40670 3.46069 3.88180 3.93630 3.95972 4.11607 4.28029 4.36774 4.49292 4.56393 4.61549 4.78997 4.95941 5.04175 5.29348 5.43599 5.49614 5.51190 5.66810 5.70849 5.88161 5.91334 5.98810 6.14700 6.32181 6.40723 6.64030 6.92626 7.10797 7.18948 7.74914 7.93407 8.37367 9.15178 9.87984 10.06127 11.36760 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.002963 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.783263 B = 9447.962475 C =10823.598830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.190 3.810 3 H 0.063 0.937 4 N -0.749 5.749 5 C -0.246 4.246 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.088 0.912 15 C -0.129 4.129 16 C 0.084 3.916 17 N -0.606 5.606 18 C 0.596 3.404 19 O -0.507 6.507 20 C -0.199 4.199 21 C -0.007 4.007 22 O 0.132 5.868 23 N -0.295 5.295 24 C -0.038 4.038 25 C 0.557 3.443 26 F -0.163 7.163 27 F -0.168 7.168 28 F -0.137 7.137 29 C 0.107 3.893 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -3.792 26.594 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.080 3.920 3 H 0.081 0.919 4 N -0.392 5.392 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.106 0.894 15 C -0.167 4.167 16 C -0.039 4.039 17 N -0.339 5.339 18 C 0.383 3.617 19 O -0.382 6.382 20 C -0.207 4.207 21 C -0.088 4.088 22 O 0.059 5.941 23 N 0.009 4.991 24 C -0.202 4.202 25 C 0.502 3.498 26 F -0.144 7.144 27 F -0.149 7.149 28 F -0.118 7.118 29 C -0.014 4.014 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.104 0.896 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.763 -4.977 27.142 27.850 hybrid contribution 0.360 -1.207 -0.882 1.538 sum -3.404 -6.185 26.260 27.192 Atomic orbital electron populations 1.22603 0.98879 1.01087 1.00709 1.20046 0.92071 0.95654 0.84207 0.91931 1.42807 1.79728 1.09446 1.07204 1.19037 1.37227 0.95612 0.85672 0.89113 1.24655 1.01199 0.97423 0.95587 1.69690 1.52297 1.35611 1.00408 0.86623 0.78326 0.86823 0.77169 1.20930 1.21673 1.20322 1.22787 1.00967 0.93419 0.95520 0.89384 1.22821 1.03573 0.96234 0.94047 1.22451 1.01031 0.84581 0.95851 1.48308 1.72234 1.04235 1.09160 1.16309 0.78207 0.82641 0.84584 1.90937 1.49039 1.38330 1.59916 1.22196 1.11579 0.90502 0.96416 1.27239 0.97855 1.00907 0.82761 1.84643 1.65197 1.12349 1.31897 1.73732 1.13657 0.93877 1.17873 1.24677 1.09297 0.95781 0.90429 1.16557 0.74955 0.81819 0.76494 1.93265 1.35336 1.90875 1.94947 1.93251 1.82508 1.71948 1.67211 1.93401 1.78872 1.96305 1.43195 1.22627 1.02785 0.96921 0.79069 0.93747 0.92083 0.93200 0.80603 0.92993 0.89438 0.89116 0.90941 0.90836 0.73883 0.89620 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.85 37.16 0.33 -2.22 16 2 C 0.19 3.08 2.84 -67.93 -0.19 2.89 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.75 -16.34 4.87 -53.43 -0.26 -16.60 16 5 C -0.25 -6.59 10.41 -15.06 -0.16 -6.74 16 6 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 9 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 13 C -0.11 -1.33 3.07 -88.47 -0.27 -1.60 16 14 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -0.99 6.31 -24.89 -0.16 -1.15 16 16 C 0.08 0.53 5.04 -3.06 -0.02 0.52 16 17 N -0.61 -6.72 3.33 -171.76 -0.57 -7.30 16 18 C 0.60 7.79 7.83 -12.53 -0.10 7.69 16 19 O -0.51 -8.70 14.33 5.28 0.08 -8.62 16 20 C -0.20 -2.03 6.36 -102.89 -0.65 -2.68 16 21 C -0.01 -0.04 10.83 30.41 0.33 0.29 16 22 O 0.13 0.95 11.06 18.63 0.21 1.16 16 23 N -0.30 -3.01 11.98 34.78 0.42 -2.59 16 24 C -0.04 -0.44 6.86 -79.77 -0.55 -0.99 16 25 C 0.56 7.06 3.49 36.01 0.13 7.18 16 26 F -0.16 -2.13 17.30 2.25 0.04 -2.09 16 27 F -0.17 -2.01 17.28 2.25 0.04 -1.97 16 28 F -0.14 -1.99 14.27 2.25 0.03 -1.95 16 29 C 0.11 1.44 5.69 -2.51 -0.01 1.43 16 30 H 0.04 0.50 6.07 -51.93 -0.32 0.18 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.74 6.04 -51.93 -0.31 0.43 16 33 H 0.36 7.95 4.93 -40.82 -0.20 7.75 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.67 5.74 -51.93 -0.30 0.37 16 37 H 0.07 0.30 6.93 -51.93 -0.36 -0.06 16 38 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 39 H 0.25 0.31 4.83 -52.49 -0.25 0.05 16 40 H 0.09 1.19 5.66 -51.93 -0.29 0.90 16 41 H 0.08 1.32 7.80 -51.93 -0.40 0.91 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -34.28 343.94 -4.29 -38.57 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.09 Total: 2.16 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.42 Total: 4.74 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.36 Total: -54.45 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.47 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.28 -4.29 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.943 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds