Wall clock time and date at job start Wed Apr 1 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 N 1.46905 * 109.46732 * 119.99947 * 2 1 3 5 5 C 1.46894 * 110.99877 * 275.00045 * 4 2 1 6 6 C 1.50699 * 109.47121 * 180.02562 * 5 4 2 7 7 O 1.21294 * 119.99967 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00447 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00093 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00439 * 359.97438 * 9 8 6 11 11 C 1.38962 * 119.99783 * 180.02562 * 9 8 6 12 12 N 1.31408 * 119.99634 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99937 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47390 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47356 * 120.00046 * 13 11 9 16 16 H 1.48501 * 109.47308 * 239.99848 * 13 11 9 17 17 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 18 18 H 1.09002 * 109.47398 * 300.00496 * 17 2 1 19 19 C 1.52997 * 109.47060 * 180.02562 * 17 2 1 20 20 N 1.46500 * 109.47023 * 60.00568 * 17 2 1 21 21 C 1.34777 * 120.00075 * 204.99547 * 20 17 2 22 22 O 1.21287 * 119.99865 * 0.02562 * 21 20 17 23 23 C 1.50699 * 120.00179 * 179.97438 * 21 20 17 24 24 C 1.53045 * 113.15073 * 280.37570 * 23 21 20 25 25 S 1.81426 * 89.88942 * 211.85279 * 24 23 21 26 26 O 1.42104 * 112.75291 * 280.47850 * 25 24 23 27 27 O 1.42101 * 112.75344 * 136.72918 * 25 24 23 28 28 C 1.53043 * 113.15103 * 180.02562 * 23 21 20 29 29 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 30 30 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 31 31 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 32 32 H 1.00899 * 110.99425 * 151.04117 * 4 2 1 33 33 H 1.09004 * 109.47113 * 299.99674 * 5 4 2 34 34 H 1.08998 * 109.47728 * 60.00088 * 5 4 2 35 35 H 0.97001 * 119.99834 * 359.97438 * 8 6 5 36 36 H 0.96999 * 119.99567 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.47533 * 59.99948 * 19 17 2 38 38 H 1.08996 * 109.47853 * 180.02562 * 19 17 2 39 39 H 1.09002 * 109.47153 * 300.00319 * 19 17 2 40 40 H 0.96997 * 120.00274 * 24.99518 * 20 17 2 41 41 H 1.08998 * 112.49614 * 50.21594 * 23 21 20 42 42 H 1.08997 * 113.15045 * 327.11133 * 24 23 21 43 43 H 1.08994 * 113.14681 * 96.59368 * 24 23 21 44 44 H 1.08994 * 113.15071 * 263.40430 * 28 23 21 45 45 H 1.09000 * 113.14857 * 32.88985 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2226 2.3469 6 6 2.5883 -0.5215 3.5558 7 8 2.8686 -1.6985 3.4700 8 7 2.7294 0.1207 4.7322 9 6 3.1891 -0.5563 5.8320 10 1 3.4379 -1.6045 5.7559 11 6 3.3341 0.1058 7.0451 12 7 3.0299 1.3808 7.1381 13 14 3.9599 -0.8169 8.5439 14 1 4.2285 -2.2309 8.1782 15 1 5.2136 -0.1844 9.0268 16 1 2.9357 -0.7689 9.6181 17 6 2.0399 -0.7214 -1.2492 18 1 1.6765 -1.7490 -1.2492 19 6 3.5699 -0.7219 -1.2489 20 7 1.5517 -0.0307 -2.4454 21 6 1.4230 -0.7031 -3.6064 22 8 1.7110 -1.8800 -3.6607 23 6 0.9202 0.0072 -4.8367 24 6 -0.6013 0.1710 -4.8574 25 16 -0.5863 0.0495 -6.6675 26 8 -0.2061 1.2655 -7.2968 27 8 -1.6271 -0.7764 -7.1716 28 6 0.8348 -0.9029 -6.0642 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.9172 -1.1206 1.0287 33 1 2.7588 1.0461 2.1183 34 1 1.0870 0.6163 2.5525 35 1 2.5056 1.0621 4.8007 36 1 3.1315 1.8431 7.9847 37 1 3.9330 -1.2359 -0.3589 38 1 3.9333 -1.2354 -2.1390 39 1 3.9337 0.3056 -1.2487 40 1 1.3210 0.9104 -2.4019 41 1 1.4547 0.9375 -5.0290 42 1 -1.1277 -0.6538 -4.3769 43 1 -0.9324 1.1445 -4.4960 44 1 1.7067 -0.8291 -6.7139 45 1 0.5850 -1.9345 -5.8162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485151410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:38 Heat of formation + Delta-G solvation = -115.313476 kcal Electronic energy + Delta-G solvation = -27961.274246 eV Core-core repulsion = 23721.204860 eV Total energy + Delta-G solvation = -4240.069385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.61250 -38.64652 -37.94039 -37.58121 -36.68903 -36.15935 -34.58533 -33.84587 -31.34493 -30.85722 -29.94239 -27.27777 -26.50889 -25.33825 -24.28221 -22.91273 -20.78598 -20.37528 -19.41063 -19.35224 -18.31960 -17.94344 -17.16736 -16.86381 -16.51600 -16.46772 -15.93650 -15.66623 -15.44506 -14.82456 -14.53428 -14.47201 -14.01836 -13.99064 -13.82116 -13.63385 -13.58246 -13.10360 -12.82909 -12.80578 -12.59145 -12.52401 -12.45920 -12.17635 -11.99425 -11.77845 -11.64897 -11.58310 -11.50143 -11.40672 -11.09427 -10.97574 -10.71790 -10.36750 -10.25943 -10.19552 -9.55479 -9.44382 -8.51133 -8.16903 -7.99941 -6.45342 -3.86036 -0.48261 1.33582 2.15545 2.63937 3.06386 3.13986 3.24965 3.32283 3.44578 3.49876 3.86246 3.92102 4.05853 4.24166 4.27853 4.36365 4.52509 4.58361 4.73008 4.75384 5.02042 5.07367 5.09032 5.21192 5.27049 5.29358 5.39982 5.54029 5.58580 5.70943 5.77052 5.87069 5.90457 6.03798 6.12536 6.18519 6.27827 7.06854 7.13280 7.52386 7.56077 7.80591 8.02903 8.57283 9.14537 9.50308 10.01507 10.72423 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.037359 B = 0.001614 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.299916 B =17339.890745 C =17607.681308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.047 0.953 4 N -0.661 5.661 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.139 3.861 18 H 0.101 0.899 19 C -0.171 4.171 20 N -0.716 5.716 21 C 0.539 3.461 22 O -0.526 6.526 23 C -0.097 4.097 24 C -0.595 4.595 25 S 2.417 3.583 26 O -0.910 6.910 27 O -0.919 6.919 28 C -0.580 4.580 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.352 0.648 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.401 0.599 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 4.496 -26.426 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.065 0.935 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.035 3.965 18 H 0.119 0.881 19 C -0.229 4.229 20 N -0.367 5.367 21 C 0.322 3.678 22 O -0.401 6.401 23 C -0.120 4.120 24 C -0.723 4.723 25 S 2.597 3.403 26 O -0.908 6.908 27 O -0.916 6.916 28 C -0.709 4.709 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.235 0.765 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.967 3.043 -27.170 28.213 hybrid contribution 1.479 1.070 1.809 2.570 sum -5.487 4.113 -25.361 26.272 Atomic orbital electron populations 1.21815 0.94141 1.02824 1.01039 1.21737 0.96560 0.95863 0.89179 0.93515 1.60175 1.35401 1.31862 1.02240 1.21723 1.01358 0.93822 0.91202 1.19779 0.85054 0.88211 0.84436 1.90534 1.55284 1.16096 1.84721 1.41864 1.57721 1.12414 1.07984 1.19762 1.39854 0.96475 0.86770 0.87825 1.25272 0.97647 0.95795 0.99268 1.69617 1.48666 1.08882 1.27128 0.85792 0.78216 0.79642 0.80650 1.19195 1.20772 1.20725 1.21136 0.94065 0.98316 0.83001 0.88091 1.22264 0.95041 1.02323 1.03307 1.45951 1.67135 1.14101 1.09535 1.19647 0.77561 0.87007 0.83615 1.90750 1.49229 1.15567 1.84544 1.21597 0.95135 1.00497 0.94782 1.30992 1.00315 1.12100 1.28861 1.08261 0.77783 0.76623 0.77608 1.93739 1.82779 1.41863 1.72379 1.93672 1.52618 1.67301 1.77987 1.30890 1.21304 1.13370 1.05333 0.92217 0.92947 0.91699 0.82541 0.93817 0.89516 0.77482 0.91911 0.90643 0.91656 0.92408 0.76469 0.84595 0.83179 0.84740 0.85105 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.26 37.16 0.34 -1.07 16 2 C 0.08 0.83 2.28 -67.71 -0.15 0.68 16 3 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 4 N -0.66 -9.97 5.93 -108.00 -0.64 -10.62 16 5 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 6 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 7 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 8 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 9 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 11 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 12 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 13 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.14 1.41 2.29 -67.93 -0.16 1.25 16 18 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 19 C -0.17 -1.74 9.25 37.16 0.34 -1.40 16 20 N -0.72 -5.25 4.38 -53.81 -0.24 -5.49 16 21 C 0.54 4.53 7.29 -10.99 -0.08 4.45 16 22 O -0.53 -6.63 15.61 5.55 0.09 -6.54 16 23 C -0.10 -0.44 3.82 -91.73 -0.35 -0.79 16 24 C -0.59 -1.67 7.48 37.18 0.28 -1.40 16 25 S 2.42 9.48 7.55 -107.50 -0.81 8.67 16 26 O -0.91 -6.18 18.18 -57.30 -1.04 -7.22 16 27 O -0.92 -7.21 18.18 -57.30 -1.04 -8.25 16 28 C -0.58 -2.41 7.18 37.18 0.27 -2.15 16 29 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 30 H 0.05 0.39 7.45 -51.93 -0.39 0.00 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.35 5.54 5.86 -39.29 -0.23 5.31 16 33 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 34 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 35 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.40 1.81 8.39 -40.82 -0.34 1.47 16 41 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.15 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.16 0.81 7.57 -51.93 -0.39 0.42 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -38.72 386.76 -8.45 -47.17 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.46 Total: 11.10 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 0.14 Total: 2.55 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.21 Total: -53.63 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.91 Total: -37.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 9.48 SS G_CDS: -0.81 Total: 8.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.72 -8.45 -47.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485151410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.143 kcal (2) G-P(sol) polarization free energy of solvation -38.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds