Wall clock time and date at job start Wed Apr 1 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 N 1.46901 * 109.47264 * 120.00424 * 2 1 3 5 5 C 1.46895 * 111.00123 * 274.99952 * 4 2 1 6 6 C 1.50700 * 109.47019 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99663 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00185 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31403 * 120.00030 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47215 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46841 * 120.00179 * 13 11 9 16 16 H 1.48496 * 109.46963 * 240.00059 * 13 11 9 17 17 C 1.53006 * 109.46811 * 240.00532 * 2 1 3 18 18 H 1.08998 * 109.46505 * 174.99683 * 17 2 1 19 19 C 1.52997 * 109.47127 * 294.99812 * 17 2 1 20 20 N 1.46500 * 109.47249 * 55.00322 * 17 2 1 21 21 C 1.34768 * 120.00056 * 154.99998 * 20 17 2 22 22 O 1.21278 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.50705 * 120.00177 * 179.97438 * 21 20 17 24 24 C 1.53035 * 113.15216 * 280.37560 * 23 21 20 25 25 S 1.81430 * 89.89064 * 211.84904 * 24 23 21 26 26 O 1.42097 * 112.75358 * 280.47511 * 25 24 23 27 27 O 1.42096 * 112.83269 * 136.71183 * 25 24 23 28 28 C 1.53044 * 113.15345 * 179.97438 * 23 21 20 29 29 H 1.09001 * 109.47273 * 59.99620 * 1 2 3 30 30 H 1.08998 * 109.47609 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46911 * 299.99548 * 1 2 3 32 32 H 1.00903 * 110.99528 * 151.04479 * 4 2 1 33 33 H 1.09005 * 109.47193 * 300.00019 * 5 4 2 34 34 H 1.09001 * 109.46938 * 59.99950 * 5 4 2 35 35 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 36 36 H 0.97002 * 120.00157 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47153 * 180.02562 * 19 17 2 38 38 H 1.09001 * 109.46832 * 60.00321 * 19 17 2 39 39 H 1.09004 * 109.47261 * 300.00303 * 19 17 2 40 40 H 0.97001 * 119.99547 * 334.99826 * 20 17 2 41 41 H 1.09003 * 112.49199 * 50.21797 * 23 21 20 42 42 H 1.08999 * 113.15327 * 327.10772 * 24 23 21 43 43 H 1.08997 * 113.14936 * 96.59212 * 24 23 21 44 44 H 1.08997 * 113.15273 * 263.41207 * 28 23 21 45 45 H 1.09001 * 113.14240 * 32.89628 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5874 -0.5222 3.5559 7 8 2.8669 -1.6993 3.4702 8 7 2.7284 0.1201 4.7325 9 6 3.1872 -0.5574 5.8325 10 1 3.4361 -1.6056 5.7562 11 6 3.3320 0.1046 7.0456 12 7 3.0287 1.3798 7.1385 13 14 3.9578 -0.8183 8.5443 14 1 4.2266 -2.2322 8.1783 15 1 5.2115 -0.1856 9.0273 16 1 2.9335 -0.7706 9.6183 17 6 2.0399 -0.7212 -1.2494 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4558 -0.1034 -2.4425 21 6 2.0912 -0.1935 -3.6276 22 8 3.1467 -0.7855 -3.7063 23 6 1.4900 0.4415 -4.8550 24 6 0.3745 -0.3980 -5.4818 25 16 0.8338 0.2236 -7.1232 26 8 0.3260 1.5257 -7.3796 27 8 0.8506 -0.7951 -8.1138 28 6 2.3404 0.2447 -6.1121 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9174 -1.1206 1.0285 33 1 2.7589 1.0460 2.1182 34 1 1.0871 0.6161 2.5525 35 1 2.5045 1.0614 4.8010 36 1 3.1294 1.8418 7.9854 37 1 1.9989 -2.7092 -2.0780 38 1 0.5489 -2.2722 -1.1423 39 1 2.0698 -2.6550 -0.3005 40 1 0.6118 0.3704 -2.3793 41 1 1.2042 1.4803 -4.6896 42 1 0.5316 -1.4709 -5.3706 43 1 -0.6225 -0.0875 -5.1696 44 1 2.9895 1.0934 -6.3277 45 1 2.8766 -0.7043 -6.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485151413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:54 Heat of formation + Delta-G solvation = -113.678291 kcal Electronic energy + Delta-G solvation = -27931.605835 eV Core-core repulsion = 23691.607356 eV Total energy + Delta-G solvation = -4239.998478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.62403 -38.65051 -37.94681 -37.62746 -36.69900 -36.16324 -34.58309 -33.83645 -31.38324 -30.98785 -29.26349 -27.28748 -26.64475 -25.52220 -24.44298 -23.17709 -20.67776 -19.89926 -19.41757 -19.35847 -18.37910 -17.93331 -17.10337 -16.88900 -16.54738 -16.36073 -15.83665 -15.64714 -15.55041 -15.06801 -14.56426 -14.47917 -14.27201 -13.95615 -13.81238 -13.71620 -13.23952 -12.90210 -12.83330 -12.81129 -12.61246 -12.52424 -12.28459 -12.20449 -12.12432 -11.87028 -11.65710 -11.58140 -11.48496 -11.15196 -10.99781 -10.97181 -10.79086 -10.36596 -10.25631 -10.19041 -9.55164 -9.42203 -8.51780 -8.17852 -7.99677 -6.44969 -3.85759 -0.48887 1.33041 2.15646 2.65820 3.06082 3.14216 3.25106 3.32364 3.44411 3.49665 3.86681 3.91833 4.05346 4.23739 4.27367 4.38468 4.52052 4.57409 4.73179 4.77002 5.05161 5.07259 5.08947 5.21741 5.29167 5.32457 5.47464 5.50154 5.64783 5.71320 5.83876 5.86668 5.90090 6.06881 6.22016 6.25751 6.34675 7.05103 7.14361 7.52494 7.52986 7.80911 8.03104 8.57554 9.14798 9.50693 10.01788 10.72790 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.001591 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.867284 B =17590.865164 C =17774.038114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.048 0.952 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.140 3.860 18 H 0.088 0.912 19 C -0.158 4.158 20 N -0.717 5.717 21 C 0.537 3.463 22 O -0.527 6.527 23 C -0.097 4.097 24 C -0.594 4.594 25 S 2.417 3.583 26 O -0.910 6.910 27 O -0.919 6.919 28 C -0.580 4.580 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.352 0.648 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 2.849 -26.455 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.066 0.934 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.035 3.965 18 H 0.106 0.894 19 C -0.216 4.216 20 N -0.371 5.371 21 C 0.320 3.680 22 O -0.403 6.403 23 C -0.121 4.121 24 C -0.722 4.722 25 S 2.597 3.403 26 O -0.907 6.907 27 O -0.916 6.916 28 C -0.708 4.708 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.625 1.735 -27.322 28.419 hybrid contribution 0.893 0.936 1.935 2.328 sum -6.732 2.671 -25.387 26.400 Atomic orbital electron populations 1.21890 0.94430 1.02968 1.00949 1.21724 0.96574 0.95932 0.89250 0.93421 1.60194 1.34975 1.31705 1.02152 1.21738 1.01359 0.93872 0.91236 1.19769 0.85027 0.88203 0.84413 1.90529 1.55300 1.16084 1.84723 1.41867 1.57743 1.12413 1.07988 1.19760 1.39893 0.96461 0.86754 0.87828 1.25268 0.97641 0.95785 0.99276 1.69615 1.48693 1.08879 1.27108 0.85795 0.78225 0.79637 0.80654 1.19201 1.20769 1.20732 1.21141 0.98756 0.93552 0.83007 0.89379 1.22129 1.02146 0.94478 1.02842 1.46127 1.25936 1.56905 1.08085 1.19670 0.84610 0.80018 0.83663 1.90742 1.22141 1.42263 1.85140 1.21602 0.94605 1.01534 0.94333 1.30984 1.06410 1.10982 1.23844 1.08277 0.80249 0.75501 0.76276 1.93738 1.75927 1.36341 1.84717 1.93669 1.83870 1.57645 1.56424 1.30891 1.19240 1.12771 1.07945 0.93278 0.91116 0.91944 0.82794 0.93800 0.89519 0.77484 0.91909 0.92850 0.92060 0.89851 0.76234 0.84574 0.83238 0.84743 0.85067 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.93 37.16 0.33 -0.98 16 2 C 0.08 0.81 2.66 -67.71 -0.18 0.63 16 3 H 0.05 0.50 7.80 -51.93 -0.41 0.09 16 4 N -0.66 -9.62 5.14 -107.99 -0.55 -10.17 16 5 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 6 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 7 O -0.58 -15.43 15.78 5.55 0.09 -15.35 16 8 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 9 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 10 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 13 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 C 0.14 1.42 2.30 -67.93 -0.16 1.26 16 18 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 19 C -0.16 -1.70 9.02 37.16 0.33 -1.36 16 20 N -0.72 -5.48 4.99 -53.81 -0.27 -5.75 16 21 C 0.54 4.65 7.29 -10.99 -0.08 4.57 16 22 O -0.53 -6.74 15.61 5.56 0.09 -6.65 16 23 C -0.10 -0.46 3.82 -91.73 -0.35 -0.81 16 24 C -0.59 -1.69 7.48 37.18 0.28 -1.41 16 25 S 2.42 9.56 7.55 -107.50 -0.81 8.74 16 26 O -0.91 -6.23 18.18 -57.31 -1.04 -7.27 16 27 O -0.92 -7.17 18.18 -57.31 -1.04 -8.22 16 28 C -0.58 -2.49 7.18 37.18 0.27 -2.22 16 29 H 0.05 0.30 6.29 -51.93 -0.33 -0.03 16 30 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 31 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 32 H 0.35 5.48 7.62 -39.29 -0.30 5.18 16 33 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 35 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 39 H 0.08 1.04 7.17 -51.93 -0.37 0.66 16 40 H 0.40 2.00 6.58 -40.82 -0.27 1.73 16 41 H 0.14 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.15 0.45 8.11 -51.93 -0.42 0.02 16 43 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.16 0.82 7.57 -51.93 -0.39 0.43 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -38.41 383.00 -8.32 -46.72 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.28 Total: 11.33 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.09 Total: 2.58 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.16 Total: -53.51 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.91 Total: -37.48 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 9.56 SS G_CDS: -0.81 Total: 8.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.41 -8.32 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485151413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.954 kcal (2) G-P(sol) polarization free energy of solvation -38.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds