Wall clock time and date at job start Wed Apr 1 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 N 1.46901 * 109.47264 * 120.00424 * 2 1 3 5 5 C 1.46895 * 111.00123 * 274.99952 * 4 2 1 6 6 C 1.50700 * 109.47019 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99616 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99663 * 179.97438 * 8 6 5 10 10 H 1.08006 * 120.00185 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31403 * 120.00030 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47215 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46841 * 120.00179 * 13 11 9 16 16 H 1.48496 * 109.46963 * 240.00059 * 13 11 9 17 17 C 1.53006 * 109.46811 * 240.00532 * 2 1 3 18 18 H 1.08998 * 109.46505 * 174.99683 * 17 2 1 19 19 C 1.52997 * 109.47127 * 294.99812 * 17 2 1 20 20 N 1.46500 * 109.47249 * 55.00322 * 17 2 1 21 21 C 1.34768 * 120.00056 * 154.99998 * 20 17 2 22 22 O 1.21278 * 120.00079 * 359.97438 * 21 20 17 23 23 C 1.50705 * 120.00177 * 179.97438 * 21 20 17 24 24 C 1.53035 * 113.15216 * 280.37560 * 23 21 20 25 25 S 1.81430 * 89.89064 * 211.84904 * 24 23 21 26 26 O 1.42097 * 112.75358 * 280.47511 * 25 24 23 27 27 O 1.42096 * 112.83269 * 136.71183 * 25 24 23 28 28 C 1.53044 * 113.15345 * 179.97438 * 23 21 20 29 29 H 1.09001 * 109.47273 * 59.99620 * 1 2 3 30 30 H 1.08998 * 109.47609 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46911 * 299.99548 * 1 2 3 32 32 H 1.00903 * 110.99528 * 151.04479 * 4 2 1 33 33 H 1.09005 * 109.47193 * 300.00019 * 5 4 2 34 34 H 1.09001 * 109.46938 * 59.99950 * 5 4 2 35 35 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 36 36 H 0.97002 * 120.00157 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47153 * 180.02562 * 19 17 2 38 38 H 1.09001 * 109.46832 * 60.00321 * 19 17 2 39 39 H 1.09004 * 109.47261 * 300.00303 * 19 17 2 40 40 H 0.97001 * 119.99547 * 334.99826 * 20 17 2 41 41 H 1.09003 * 112.49199 * 50.21797 * 23 21 20 42 42 H 1.08999 * 113.15327 * 327.10772 * 24 23 21 43 43 H 1.08997 * 113.14936 * 96.59212 * 24 23 21 44 44 H 1.08997 * 113.15273 * 263.41207 * 28 23 21 45 45 H 1.09001 * 113.14240 * 32.89628 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5874 -0.5222 3.5559 7 8 2.8669 -1.6993 3.4702 8 7 2.7284 0.1201 4.7325 9 6 3.1872 -0.5574 5.8325 10 1 3.4361 -1.6056 5.7562 11 6 3.3320 0.1046 7.0456 12 7 3.0287 1.3798 7.1385 13 14 3.9578 -0.8183 8.5443 14 1 4.2266 -2.2322 8.1783 15 1 5.2115 -0.1856 9.0273 16 1 2.9335 -0.7706 9.6183 17 6 2.0399 -0.7212 -1.2494 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4558 -0.1034 -2.4425 21 6 2.0912 -0.1935 -3.6276 22 8 3.1467 -0.7855 -3.7063 23 6 1.4900 0.4415 -4.8550 24 6 0.3745 -0.3980 -5.4818 25 16 0.8338 0.2236 -7.1232 26 8 0.3260 1.5257 -7.3796 27 8 0.8506 -0.7951 -8.1138 28 6 2.3404 0.2447 -6.1121 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9174 -1.1206 1.0285 33 1 2.7589 1.0460 2.1182 34 1 1.0871 0.6161 2.5525 35 1 2.5045 1.0614 4.8010 36 1 3.1294 1.8418 7.9854 37 1 1.9989 -2.7092 -2.0780 38 1 0.5489 -2.2722 -1.1423 39 1 2.0698 -2.6550 -0.3005 40 1 0.6118 0.3704 -2.3793 41 1 1.2042 1.4803 -4.6896 42 1 0.5316 -1.4709 -5.3706 43 1 -0.6225 -0.0875 -5.1696 44 1 2.9895 1.0934 -6.3277 45 1 2.8766 -0.7043 -6.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485151413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:53 Heat of formation + Delta-G solvation = -147.723269 kcal Electronic energy + Delta-G solvation = -27933.082136 eV Core-core repulsion = 23691.607356 eV Total energy + Delta-G solvation = -4241.474779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31946 -40.20978 -38.78855 -38.36783 -37.19056 -36.68781 -36.05734 -35.33924 -33.28179 -32.07418 -30.11203 -28.15275 -27.57893 -26.28136 -25.93172 -24.11565 -21.31308 -21.12619 -20.74094 -19.93272 -19.77281 -18.95560 -17.83429 -17.53658 -17.31654 -17.12043 -16.88413 -16.69495 -16.41444 -16.19581 -16.00088 -15.68923 -15.26946 -15.08013 -14.97944 -14.39482 -14.25881 -14.08491 -13.61888 -13.54099 -13.42501 -13.32597 -13.30157 -13.11307 -13.07282 -12.88238 -12.83181 -12.58037 -12.49871 -12.40199 -12.12121 -12.04079 -11.91263 -11.66431 -11.51547 -11.32557 -10.88763 -10.35811 -10.16278 -10.01595 -9.37517 -8.47374 -5.95752 -0.84580 1.00123 1.36209 1.41797 1.54352 1.55714 2.00041 2.05578 2.29575 2.73532 2.94362 3.07198 3.16593 3.20190 3.47859 3.55542 3.63900 3.93623 3.94403 4.04378 4.19621 4.29055 4.30882 4.46188 4.47266 4.53266 4.59057 4.66112 4.81335 4.84327 4.84697 4.97364 4.99531 5.05163 5.29336 5.41015 5.45858 5.52307 5.88351 6.09196 6.33226 6.50490 6.59882 7.12654 7.19444 7.56295 8.11705 8.70182 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.001591 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.867284 B =17590.865164 C =17774.038114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.060 0.940 4 N -0.669 5.669 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.148 3.852 18 H 0.066 0.934 19 C -0.151 4.151 20 N -0.704 5.704 21 C 0.534 3.466 22 O -0.575 6.575 23 C -0.099 4.099 24 C -0.578 4.578 25 S 2.453 3.547 26 O -0.935 6.935 27 O -0.960 6.960 28 C -0.586 4.586 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.343 0.657 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.418 0.582 41 H 0.170 0.830 42 H 0.150 0.850 43 H 0.168 0.832 44 H 0.144 0.856 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 4.372 -26.882 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.078 0.922 4 N -0.303 5.303 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.197 1.197 16 H -0.196 1.196 17 C 0.042 3.958 18 H 0.084 0.916 19 C -0.209 4.209 20 N -0.358 5.358 21 C 0.319 3.681 22 O -0.454 6.454 23 C -0.123 4.123 24 C -0.708 4.708 25 S 2.636 3.364 26 O -0.932 6.932 27 O -0.957 6.957 28 C -0.715 4.715 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.258 0.742 41 H 0.188 0.812 42 H 0.169 0.831 43 H 0.186 0.814 44 H 0.162 0.838 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.239 3.312 -27.787 29.469 hybrid contribution 1.391 0.442 2.042 2.511 sum -7.848 3.754 -25.744 27.174 Atomic orbital electron populations 1.21912 0.92696 1.02946 1.02545 1.21788 0.97702 0.95945 0.87510 0.92238 1.60226 1.34597 1.32142 1.03298 1.21582 1.02447 0.93578 0.88983 1.20900 0.83169 0.87993 0.85444 1.90499 1.56594 1.18236 1.85593 1.41933 1.58349 1.12573 1.08238 1.19694 1.42075 0.95915 0.88594 0.90394 1.26018 0.97265 0.96626 1.01343 1.69667 1.48680 1.09645 1.28076 0.84883 0.78168 0.78013 0.77345 1.19903 1.19657 1.19563 1.20852 0.97691 0.93277 0.83966 0.91581 1.22039 1.02703 0.94837 1.01354 1.45957 1.26359 1.56440 1.07060 1.20318 0.83980 0.79205 0.84629 1.90732 1.24382 1.44366 1.85899 1.21803 0.95001 1.03267 0.92179 1.30890 1.07711 1.10857 1.21331 1.07120 0.79379 0.74038 0.75890 1.93701 1.76430 1.37625 1.85449 1.93613 1.84546 1.58842 1.58713 1.30951 1.19840 1.12818 1.07873 0.89564 0.91957 0.92521 0.83817 0.91680 0.87425 0.76949 0.91308 0.93629 0.90762 0.92073 0.74246 0.81219 0.83143 0.81394 0.83778 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.93 71.98 0.64 -1.50 16 2 C 0.08 1.54 2.66 44.92 0.12 1.66 16 3 H 0.06 1.05 7.80 -2.39 -0.02 1.03 16 4 N -0.67 -19.11 5.14 -495.57 -2.54 -21.66 16 5 C 0.07 2.12 5.96 85.56 0.51 2.63 16 6 C 0.44 20.26 7.82 87.66 0.69 20.95 16 7 O -0.62 -33.99 15.78 -3.05 -0.05 -34.03 16 8 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 9 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 10 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 13 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 C 0.15 2.82 2.30 44.99 0.10 2.92 16 18 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 19 C -0.15 -3.19 9.02 71.98 0.65 -2.54 16 20 N -0.70 -8.89 4.99 -442.54 -2.21 -11.10 16 21 C 0.53 8.23 7.29 87.66 0.64 8.87 16 22 O -0.57 -14.56 15.61 -3.02 -0.05 -14.61 16 23 C -0.10 -0.65 3.82 -11.51 -0.04 -0.69 16 24 C -0.58 -1.49 7.48 71.99 0.54 -0.95 16 25 S 2.45 15.59 7.55 -56.49 -0.43 15.16 16 26 O -0.93 -11.00 18.18 -127.87 -2.32 -13.33 16 27 O -0.96 -14.54 18.18 -127.87 -2.32 -16.87 16 28 C -0.59 -4.21 7.18 72.00 0.52 -3.69 16 29 H 0.09 0.63 6.29 -2.39 -0.02 0.62 16 30 H 0.06 1.06 6.56 -2.39 -0.02 1.05 16 31 H 0.06 0.95 7.45 -2.39 -0.02 0.93 16 32 H 0.34 10.84 7.62 -89.69 -0.68 10.16 16 33 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 34 H 0.11 3.03 7.44 -2.39 -0.02 3.01 16 35 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 36 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.35 6.56 -2.39 -0.02 1.33 16 39 H 0.06 1.57 7.17 -2.38 -0.02 1.55 16 40 H 0.42 2.38 6.58 -92.71 -0.61 1.77 16 41 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.15 0.52 8.11 -2.39 -0.02 0.50 16 43 H 0.17 -0.64 8.14 -2.39 -0.02 -0.65 16 44 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.14 1.49 7.57 -2.39 -0.02 1.47 16 Total: -1.00 -85.57 383.00 -4.56 -90.12 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.97 Total: 31.42 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.64 Total: 9.47 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.09 Total: -112.05 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: -4.74 Total: -78.84 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 15.59 SS G_CDS: -0.43 Total: 15.16 kcal Total: -85.57 -4.56 -90.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485151413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.599 kcal (2) G-P(sol) polarization free energy of solvation -85.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds