Wall clock time and date at job start Wed Apr 1 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47594 * 120.00195 * 2 1 3 5 5 N 1.46501 * 109.47344 * 174.99818 * 4 2 1 6 6 C 1.34773 * 120.00140 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99916 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00131 * 179.97438 * 6 5 4 9 9 C 1.53040 * 113.15319 * 280.37525 * 8 6 5 10 10 S 1.81433 * 89.89063 * 211.85165 * 9 8 6 11 11 O 1.42096 * 112.75384 * 280.47769 * 10 9 8 12 12 O 1.42095 * 112.74839 * 136.73065 * 10 9 8 13 13 C 1.53045 * 113.15138 * 180.02562 * 8 6 5 14 14 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 15 15 C 1.46899 * 110.99599 * 306.04436 * 14 2 1 16 16 C 1.46895 * 111.00018 * 69.99507 * 14 2 1 17 17 C 1.50706 * 109.47182 * 170.00113 * 16 14 2 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 14 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00261 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99599 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47644 * 89.99834 * 24 22 20 26 26 H 1.48506 * 109.47143 * 209.99780 * 24 22 20 27 27 H 1.48501 * 109.47120 * 329.99495 * 24 22 20 28 28 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 29 29 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 31 31 H 1.09000 * 109.47406 * 295.00236 * 4 2 1 32 32 H 1.09000 * 109.47047 * 55.00057 * 4 2 1 33 33 H 0.97003 * 119.99882 * 0.02562 * 5 4 2 34 34 H 1.09005 * 112.49559 * 50.22121 * 8 6 5 35 35 H 1.08992 * 113.15035 * 327.10951 * 9 8 6 36 36 H 1.09008 * 113.14494 * 96.59809 * 9 8 6 37 37 H 1.09005 * 113.15072 * 263.40574 * 13 8 6 38 38 H 1.09000 * 113.14733 * 32.89150 * 13 8 6 39 39 H 1.08998 * 109.47218 * 183.95834 * 15 14 2 40 40 H 1.09004 * 109.47214 * 303.95234 * 15 14 2 41 41 H 1.08996 * 109.47566 * 63.95524 * 15 14 2 42 42 H 1.09001 * 109.47613 * 50.00459 * 16 14 2 43 43 H 1.08998 * 109.47678 * 290.00354 * 16 14 2 44 44 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 45 45 H 0.97009 * 120.00065 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1909 7 8 3.5702 -1.8833 3.1397 8 6 5.6750 -1.5369 2.1302 9 6 6.1601 -2.6748 1.2290 10 16 7.6075 -2.9009 2.2994 11 8 8.6298 -1.9459 2.0503 12 8 7.8898 -4.2689 2.5601 13 6 6.2765 -2.2479 3.3447 14 7 2.0196 -0.6924 -1.1996 15 6 1.4342 -2.0353 -1.3080 16 6 1.7528 0.0974 -2.4091 17 6 2.4772 -0.5160 -3.5796 18 8 3.1493 -1.5133 -3.4217 19 7 2.3735 0.0401 -4.8028 20 6 3.0321 -0.5182 -5.8677 21 1 3.6345 -1.4035 -5.7263 22 6 2.9248 0.0547 -7.1290 23 7 3.5565 -0.4802 -8.1496 24 14 1.8836 1.5862 -7.3736 25 1 2.7234 2.7937 -7.1692 26 1 1.3318 1.5947 -8.7523 27 1 0.7677 1.5877 -6.3938 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4621 0.4317 34 1 6.1538 -0.5823 1.9116 35 1 5.4904 -3.5347 1.2267 36 1 6.4186 -2.3441 0.2230 37 1 6.6325 -1.5597 4.1113 38 1 5.6291 -3.0257 3.7498 39 1 1.8663 -2.5520 -2.1650 40 1 1.6466 -2.5987 -0.3993 41 1 0.3555 -1.9520 -1.4400 42 1 2.1023 1.1191 -2.2604 43 1 0.6813 0.1055 -2.6087 44 1 1.8322 0.8349 -4.9300 45 1 3.4819 -0.0800 -9.0301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485310764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:48 Heat of formation + Delta-G solvation = -97.881424 kcal Electronic energy + Delta-G solvation = -28812.183292 eV Core-core repulsion = 24572.869817 eV Total energy + Delta-G solvation = -4239.313475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.29436 -39.17257 -37.70672 -37.56903 -36.46054 -35.98342 -34.52067 -33.93380 -31.75427 -31.15812 -28.15588 -27.23658 -26.86815 -25.56631 -24.20939 -23.39685 -20.45518 -19.92376 -19.39920 -19.14277 -18.32931 -17.92927 -16.87954 -16.73720 -16.55645 -16.16542 -15.93696 -15.51853 -15.29267 -15.05870 -15.00739 -14.35134 -14.20121 -13.96051 -13.52712 -13.36564 -13.25525 -13.11504 -12.95183 -12.58915 -12.56606 -12.54642 -12.28555 -12.24911 -12.04687 -11.90150 -11.73573 -11.43162 -11.39159 -11.31123 -11.10324 -10.91299 -10.70307 -10.65813 -10.04023 -10.00011 -9.60530 -9.17098 -8.69160 -8.25186 -8.07051 -6.37251 -3.88959 -0.20898 1.60889 2.39696 2.94949 2.96429 3.01131 3.10139 3.33020 3.65611 3.70374 3.77453 3.82592 4.04272 4.21732 4.52495 4.54463 4.64321 4.76395 4.83022 4.89538 5.05095 5.06394 5.14218 5.28091 5.35133 5.40336 5.41309 5.52078 5.55150 5.61017 5.70659 5.73550 5.80996 5.86701 5.98868 6.29462 6.43683 7.01350 7.15288 7.40720 7.51597 8.05118 8.07891 8.53255 8.88838 9.35846 9.76021 10.75740 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.002619 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.580572 B =10689.791337 C =12525.274471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.062 3.938 3 H 0.089 0.911 4 C 0.131 3.869 5 N -0.707 5.707 6 C 0.537 3.463 7 O -0.543 6.543 8 C -0.095 4.095 9 C -0.591 4.591 10 S 2.418 3.582 11 O -0.911 6.911 12 O -0.922 6.922 13 C -0.580 4.580 14 N -0.511 5.511 15 C 0.016 3.984 16 C 0.041 3.959 17 C 0.452 3.548 18 O -0.560 6.560 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 2.847 21.145 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.107 0.893 4 C 0.007 3.993 5 N -0.358 5.358 6 C 0.321 3.679 7 O -0.420 6.420 8 C -0.118 4.118 9 C -0.719 4.719 10 S 2.598 3.402 11 O -0.908 6.908 12 O -0.919 6.919 13 C -0.709 4.709 14 N -0.234 5.234 15 C -0.132 4.132 16 C -0.090 4.090 17 C 0.237 3.763 18 O -0.442 6.442 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.202 0.798 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.416 1.413 21.730 21.780 hybrid contribution -2.768 2.037 -1.012 3.583 sum -2.353 3.450 20.717 21.134 Atomic orbital electron populations 1.22397 0.96451 1.02964 1.02641 1.22055 0.93607 0.98564 0.90458 0.89305 1.21402 0.80071 1.01073 0.96781 1.45793 1.07784 1.58864 1.23394 1.19657 0.88135 0.77761 0.82376 1.90697 1.69645 1.48001 1.33677 1.21554 0.96454 0.99744 0.94077 1.30958 1.20885 1.06058 1.13992 1.08230 0.76455 0.74887 0.80624 1.93733 1.52780 1.62491 1.81797 1.93655 1.85524 1.31604 1.81127 1.30891 1.18178 1.12025 1.09800 1.61808 1.58267 1.02868 1.00480 1.22616 0.96459 0.90088 1.04025 1.21928 0.98704 0.97821 0.90570 1.19611 0.86309 0.87042 0.83304 1.90524 1.43390 1.26402 1.83875 1.42214 1.45449 1.27218 1.08046 1.19411 1.26363 1.12541 0.85118 0.86266 1.25039 0.97605 0.98168 0.95298 1.69617 1.41834 1.40170 1.00358 0.86678 0.80492 0.83540 0.78672 1.19587 1.20191 1.19590 0.91817 0.91663 0.91849 0.91112 0.91266 0.74941 0.84667 0.83323 0.84259 0.85362 0.82837 0.88458 0.92061 0.95995 0.89322 0.93108 0.79761 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.44 37.16 0.31 -1.26 16 2 C 0.06 0.60 2.47 -67.71 -0.17 0.43 16 3 H 0.09 0.77 7.93 -51.93 -0.41 0.35 16 4 C 0.13 1.29 4.85 -4.04 -0.02 1.27 16 5 N -0.71 -7.16 5.39 -60.30 -0.32 -7.48 16 6 C 0.54 5.81 7.33 -10.99 -0.08 5.73 16 7 O -0.54 -7.60 15.94 5.56 0.09 -7.51 16 8 C -0.09 -0.73 3.82 -91.73 -0.35 -1.08 16 9 C -0.59 -4.17 7.48 37.18 0.28 -3.89 16 10 S 2.42 16.77 7.55 -107.50 -0.81 15.96 16 11 O -0.91 -9.00 18.18 -57.30 -1.04 -10.04 16 12 O -0.92 -9.75 18.18 -57.30 -1.04 -10.79 16 13 C -0.58 -3.75 7.18 37.18 0.27 -3.48 16 14 N -0.51 -6.63 3.89 -236.34 -0.92 -7.55 16 15 C 0.02 0.22 8.32 60.06 0.50 0.72 16 16 C 0.04 0.60 5.02 -4.98 -0.02 0.57 16 17 C 0.45 9.33 7.51 -10.98 -0.08 9.25 16 18 O -0.56 -13.62 13.88 5.54 0.08 -13.54 16 19 N -0.59 -13.17 5.09 -10.96 -0.06 -13.22 16 20 C -0.31 -8.27 10.16 -14.93 -0.15 -8.42 16 21 H 0.12 3.70 7.39 -52.48 -0.39 3.32 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.03 13.96 55.50 0.77 -24.26 16 24 Si 0.88 18.65 27.74 -169.99 -4.71 13.94 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.18 6.52 56.52 0.37 -4.82 16 28 H 0.06 0.56 6.91 -51.93 -0.36 0.20 16 29 H 0.06 0.59 6.41 -51.93 -0.33 0.25 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.76 6.71 -51.93 -0.35 0.41 16 33 H 0.41 4.03 8.14 -40.82 -0.33 3.70 16 34 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.15 1.07 8.11 -51.93 -0.42 0.65 16 36 H 0.14 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.15 1.10 7.57 -51.93 -0.39 0.71 16 39 H 0.10 1.73 5.88 -51.93 -0.31 1.42 16 40 H 0.06 0.78 6.41 -51.93 -0.33 0.45 16 41 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 42 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.05 0.67 7.06 -51.93 -0.37 0.30 16 44 H 0.37 7.25 5.76 -40.82 -0.24 7.01 16 45 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -37.93 376.30 -8.17 -46.10 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.26 Total: 11.88 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.39 Total: 0.86 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.53 Total: -52.52 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.92 Total: -41.88 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.94 kcal Atomic # 16 Polarization: 16.77 SS G_CDS: -0.81 Total: 15.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.93 -8.17 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485310764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.785 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds