Wall clock time and date at job start Wed Apr 1 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47594 * 120.00195 * 2 1 3 5 5 N 1.46501 * 109.47344 * 174.99818 * 4 2 1 6 6 C 1.34773 * 120.00140 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99916 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00131 * 179.97438 * 6 5 4 9 9 C 1.53040 * 113.15319 * 280.37525 * 8 6 5 10 10 S 1.81433 * 89.89063 * 211.85165 * 9 8 6 11 11 O 1.42096 * 112.75384 * 280.47769 * 10 9 8 12 12 O 1.42095 * 112.74839 * 136.73065 * 10 9 8 13 13 C 1.53045 * 113.15138 * 180.02562 * 8 6 5 14 14 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 15 15 C 1.46899 * 110.99599 * 306.04436 * 14 2 1 16 16 C 1.46895 * 111.00018 * 69.99507 * 14 2 1 17 17 C 1.50706 * 109.47182 * 170.00113 * 16 14 2 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 14 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00261 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99599 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47644 * 89.99834 * 24 22 20 26 26 H 1.48506 * 109.47143 * 209.99780 * 24 22 20 27 27 H 1.48501 * 109.47120 * 329.99495 * 24 22 20 28 28 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 29 29 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 31 31 H 1.09000 * 109.47406 * 295.00236 * 4 2 1 32 32 H 1.09000 * 109.47047 * 55.00057 * 4 2 1 33 33 H 0.97003 * 119.99882 * 0.02562 * 5 4 2 34 34 H 1.09005 * 112.49559 * 50.22121 * 8 6 5 35 35 H 1.08992 * 113.15035 * 327.10951 * 9 8 6 36 36 H 1.09008 * 113.14494 * 96.59809 * 9 8 6 37 37 H 1.09005 * 113.15072 * 263.40574 * 13 8 6 38 38 H 1.09000 * 113.14733 * 32.89150 * 13 8 6 39 39 H 1.08998 * 109.47218 * 183.95834 * 15 14 2 40 40 H 1.09004 * 109.47214 * 303.95234 * 15 14 2 41 41 H 1.08996 * 109.47566 * 63.95524 * 15 14 2 42 42 H 1.09001 * 109.47613 * 50.00459 * 16 14 2 43 43 H 1.08998 * 109.47678 * 290.00354 * 16 14 2 44 44 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 45 45 H 0.97009 * 120.00065 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1909 7 8 3.5702 -1.8833 3.1397 8 6 5.6750 -1.5369 2.1302 9 6 6.1601 -2.6748 1.2290 10 16 7.6075 -2.9009 2.2994 11 8 8.6298 -1.9459 2.0503 12 8 7.8898 -4.2689 2.5601 13 6 6.2765 -2.2479 3.3447 14 7 2.0196 -0.6924 -1.1996 15 6 1.4342 -2.0353 -1.3080 16 6 1.7528 0.0974 -2.4091 17 6 2.4772 -0.5160 -3.5796 18 8 3.1493 -1.5133 -3.4217 19 7 2.3735 0.0401 -4.8028 20 6 3.0321 -0.5182 -5.8677 21 1 3.6345 -1.4035 -5.7263 22 6 2.9248 0.0547 -7.1290 23 7 3.5565 -0.4802 -8.1496 24 14 1.8836 1.5862 -7.3736 25 1 2.7234 2.7937 -7.1692 26 1 1.3318 1.5947 -8.7523 27 1 0.7677 1.5877 -6.3938 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4621 0.4317 34 1 6.1538 -0.5823 1.9116 35 1 5.4904 -3.5347 1.2267 36 1 6.4186 -2.3441 0.2230 37 1 6.6325 -1.5597 4.1113 38 1 5.6291 -3.0257 3.7498 39 1 1.8663 -2.5520 -2.1650 40 1 1.6466 -2.5987 -0.3993 41 1 0.3555 -1.9520 -1.4400 42 1 2.1023 1.1191 -2.2604 43 1 0.6813 0.1055 -2.6087 44 1 1.8322 0.8349 -4.9300 45 1 3.4819 -0.0800 -9.0301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485310764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:47 Heat of formation + Delta-G solvation = -132.282163 kcal Electronic energy + Delta-G solvation = -28813.675020 eV Core-core repulsion = 24572.869817 eV Total energy + Delta-G solvation = -4240.805203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15350 -40.50734 -38.89560 -38.38934 -37.20408 -36.70334 -35.98883 -35.27324 -33.71163 -32.08723 -29.42357 -27.94766 -27.49593 -27.01260 -25.42477 -24.37236 -21.40004 -21.15349 -20.72432 -20.05946 -19.77756 -18.69142 -17.93607 -17.59160 -17.21312 -17.00850 -16.92761 -16.80555 -16.45231 -16.24415 -16.12366 -15.57877 -15.19893 -14.96930 -14.82395 -14.55764 -14.28357 -14.15578 -14.10178 -13.81063 -13.55593 -13.33275 -13.31072 -13.13404 -12.91833 -12.84357 -12.78974 -12.52397 -12.42117 -12.35666 -12.27886 -12.02888 -11.96101 -11.73731 -11.42463 -11.32921 -10.84913 -10.31925 -10.19247 -10.01294 -9.18080 -8.38174 -5.98231 -0.84256 1.00719 1.31527 1.37452 1.45862 1.59157 2.02345 2.20004 2.25210 2.63525 2.73066 3.09879 3.17752 3.18556 3.30922 3.58012 3.77186 3.95886 4.01281 4.09879 4.20904 4.28120 4.33167 4.37317 4.46161 4.53582 4.57749 4.65241 4.68640 4.80793 4.84597 4.87640 4.96687 5.02016 5.22556 5.32378 5.49819 5.56467 5.92400 6.03208 6.19277 6.59446 6.63817 6.93589 7.23717 7.45497 8.03414 8.79518 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.002619 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.580572 B =10689.791337 C =12525.274471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.070 3.930 3 H 0.111 0.889 4 C 0.131 3.869 5 N -0.705 5.705 6 C 0.533 3.467 7 O -0.578 6.578 8 C -0.100 4.100 9 C -0.592 4.592 10 S 2.456 3.544 11 O -0.936 6.936 12 O -0.959 6.959 13 C -0.569 4.569 14 N -0.523 5.523 15 C 0.025 3.975 16 C 0.054 3.946 17 C 0.453 3.547 18 O -0.602 6.602 19 N -0.595 5.595 20 C -0.323 4.323 21 H 0.056 0.944 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.230 1.230 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.417 0.583 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.388 0.612 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.453 6.267 22.851 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 H 0.129 0.871 4 C 0.006 3.994 5 N -0.355 5.355 6 C 0.318 3.682 7 O -0.458 6.458 8 C -0.124 4.124 9 C -0.721 4.721 10 S 2.639 3.361 11 O -0.934 6.934 12 O -0.956 6.956 13 C -0.698 4.698 14 N -0.247 5.247 15 C -0.123 4.123 16 C -0.077 4.077 17 C 0.241 3.759 18 O -0.486 6.486 19 N -0.237 5.237 20 C -0.452 4.452 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.579 5.579 24 Si 0.784 3.216 25 H -0.181 1.181 26 H -0.205 1.205 27 H -0.154 1.154 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.224 0.776 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.702 4.836 23.458 24.012 hybrid contribution -2.082 0.850 -1.453 2.677 sum -3.784 5.686 22.005 23.041 Atomic orbital electron populations 1.22371 0.95123 1.02821 1.03820 1.22104 0.94583 0.98912 0.88181 0.87145 1.21440 0.79868 1.00577 0.97484 1.45852 1.08065 1.58381 1.23219 1.20097 0.89240 0.77000 0.81839 1.90681 1.70637 1.49496 1.35011 1.21761 0.94692 1.01223 0.94676 1.30985 1.20566 1.05958 1.14551 1.07056 0.75769 0.73293 0.80022 1.93692 1.54340 1.62910 1.82415 1.93601 1.86215 1.33896 1.81910 1.30791 1.16828 1.12141 1.10089 1.61710 1.59211 1.02568 1.01227 1.22401 0.96937 0.90666 1.02304 1.21858 0.99089 0.98703 0.88089 1.20922 0.84855 0.85905 0.84266 1.90524 1.44941 1.28361 1.84770 1.42050 1.46027 1.28101 1.07499 1.18975 1.27181 1.11591 0.87497 0.92621 1.26090 0.98932 1.02395 0.94093 1.69808 1.44126 1.42728 1.01192 0.85384 0.79299 0.77732 0.79194 1.18140 1.20544 1.15360 0.91361 0.92506 0.89945 0.89984 0.92702 0.74605 0.81902 0.83670 0.83608 0.82971 0.83366 0.92943 0.91435 0.94550 0.85743 0.90564 0.77638 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.44 71.98 0.61 -1.74 16 2 C 0.07 1.09 2.47 44.91 0.11 1.20 16 3 H 0.11 1.32 7.93 -2.39 -0.02 1.30 16 4 C 0.13 2.26 4.85 86.38 0.42 2.68 16 5 N -0.70 -12.92 5.39 -463.07 -2.50 -15.42 16 6 C 0.53 10.79 7.33 87.66 0.64 11.43 16 7 O -0.58 -15.63 15.94 -3.03 -0.05 -15.68 16 8 C -0.10 -1.37 3.82 -11.51 -0.04 -1.42 16 9 C -0.59 -8.02 7.48 72.00 0.54 -7.48 16 10 S 2.46 32.93 7.55 -56.49 -0.43 32.51 16 11 O -0.94 -17.79 18.18 -127.88 -2.32 -20.12 16 12 O -0.96 -20.53 18.18 -127.88 -2.32 -22.86 16 13 C -0.57 -6.53 7.18 72.00 0.52 -6.01 16 14 N -0.52 -12.31 3.89 -901.63 -3.51 -15.82 16 15 C 0.02 0.67 8.32 127.69 1.06 1.73 16 16 C 0.05 1.36 5.02 85.56 0.43 1.79 16 17 C 0.45 18.39 7.51 87.66 0.66 19.05 16 18 O -0.60 -30.29 13.88 -3.08 -0.04 -30.34 16 19 N -0.59 -26.06 5.09 -306.98 -1.56 -27.63 16 20 C -0.32 -18.13 10.16 84.04 0.85 -17.27 16 21 H 0.06 3.75 7.39 -2.91 -0.02 3.73 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.94 -55.47 13.96 21.66 0.30 -55.17 16 24 Si 0.96 37.29 27.74 68.60 1.90 39.19 16 25 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 28 H 0.07 0.85 6.91 -2.39 -0.02 0.84 16 29 H 0.06 0.84 6.41 -2.39 -0.02 0.83 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.12 6.71 -2.39 -0.02 1.11 16 33 H 0.42 7.22 8.14 -92.71 -0.75 6.47 16 34 H 0.16 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.15 2.11 8.11 -2.39 -0.02 2.09 16 36 H 0.15 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.15 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.15 2.00 7.57 -2.39 -0.02 1.99 16 39 H 0.05 1.91 5.88 -2.39 -0.01 1.89 16 40 H 0.07 1.70 6.41 -2.38 -0.02 1.68 16 41 H 0.04 0.86 6.46 -2.39 -0.02 0.84 16 42 H 0.12 2.38 7.93 -2.39 -0.02 2.36 16 43 H 0.08 1.64 7.06 -2.39 -0.02 1.62 16 44 H 0.39 13.96 5.76 -92.71 -0.53 13.43 16 45 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -88.32 376.30 -4.57 -92.88 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.30 Total: 34.92 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.26 Total: 3.52 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -7.26 Total: -114.03 kcal Atomic # 8 Polarization: -84.25 SS G_CDS: -4.74 Total: -88.99 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.19 kcal Atomic # 16 Polarization: 32.93 SS G_CDS: -0.43 Total: 32.51 kcal Total: -88.32 -4.57 -92.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485310764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.401 kcal (2) G-P(sol) polarization free energy of solvation -88.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds