Wall clock time and date at job start Wed Apr 1 2020 07:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 N 1.46503 * 109.46953 * 184.99853 * 4 2 1 6 6 C 1.34774 * 119.99905 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99766 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.28258 * 27.88654 * 8 6 5 10 10 C 1.54165 * 110.31585 * 150.00204 * 8 6 5 11 11 C 1.53877 * 108.70312 * 146.80876 * 10 8 6 12 12 C 1.55046 * 106.62738 * 312.82171 * 11 10 8 13 13 S 1.82921 * 110.32002 * 265.66185 * 8 6 5 14 14 O 1.42103 * 109.35018 * 352.37618 * 13 8 6 15 15 O 1.42097 * 109.35152 * 125.57362 * 13 8 6 16 16 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 17 17 C 1.46906 * 110.99888 * 275.00023 * 16 2 1 18 18 C 1.50699 * 109.47140 * 179.97438 * 17 16 2 19 19 O 1.21289 * 119.99678 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99614 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99518 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00466 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00498 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99920 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47208 * 89.99447 * 25 23 21 27 27 H 1.48495 * 109.46914 * 210.00201 * 25 23 21 28 28 H 1.48508 * 109.46806 * 329.99819 * 25 23 21 29 29 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 30 30 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 31 31 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47450 * 305.00128 * 4 2 1 33 33 H 1.09008 * 109.47241 * 65.00366 * 4 2 1 34 34 H 0.96994 * 119.99763 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.65088 * 266.65950 * 10 8 6 36 36 H 1.09003 * 109.65097 * 26.96230 * 10 8 6 37 37 H 1.09006 * 110.02672 * 72.11346 * 11 10 8 38 38 H 1.08997 * 110.02832 * 193.52231 * 11 10 8 39 39 H 1.09002 * 110.79356 * 160.70218 * 12 11 10 40 40 H 1.08999 * 110.78503 * 284.16097 * 12 11 10 41 41 H 1.00901 * 111.00121 * 151.04609 * 16 2 1 42 42 H 1.09004 * 109.47040 * 299.99934 * 17 16 2 43 43 H 1.09000 * 109.47033 * 59.99886 * 17 16 2 44 44 H 0.96996 * 120.00269 * 359.97438 * 20 18 17 45 45 H 0.97002 * 120.00283 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1907 7 8 3.5699 -1.8841 -3.1395 8 6 5.6748 -1.5377 -2.1301 9 1 6.0108 -1.5553 -1.0934 10 6 6.1501 -2.8048 -2.8685 11 6 7.5167 -2.5163 -3.5142 12 6 7.3856 -1.1522 -4.2395 13 16 6.4492 -0.1448 -3.0280 14 8 5.4437 0.5946 -3.7074 15 8 7.3607 0.5225 -2.1659 16 7 2.0197 -0.6926 1.1994 17 6 2.0824 0.2225 2.3469 18 6 2.5873 -0.5220 3.5560 19 8 2.8677 -1.6989 3.4701 20 7 2.7272 0.1201 4.7327 21 6 3.1870 -0.5571 5.8325 22 1 3.4367 -1.6050 5.7562 23 6 3.3318 0.1049 7.0456 24 7 3.7720 -0.5442 8.1000 25 14 2.9006 1.9177 7.1777 26 1 1.4711 2.0603 7.5538 27 1 3.7514 2.5545 8.2149 28 1 3.1365 2.5792 5.8692 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9823 -0.4628 -0.4317 35 1 6.2460 -3.6277 -2.1601 36 1 5.4288 -3.0711 -3.6411 37 1 8.2878 -2.4579 -2.7459 38 1 7.7631 -3.2986 -4.2321 39 1 8.3675 -0.7177 -4.4271 40 1 6.8252 -1.2602 -5.1681 41 1 2.9173 -1.1206 1.0286 42 1 2.7589 1.0461 2.1183 43 1 1.0870 0.6162 2.5525 44 1 2.5033 1.0614 4.8013 45 1 3.8727 -0.0822 8.9469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491683132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:35 Heat of formation + Delta-G solvation = -131.474151 kcal Electronic energy + Delta-G solvation = -28694.532560 eV Core-core repulsion = 24453.762395 eV Total energy + Delta-G solvation = -4240.770165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.34518 -38.69147 -37.53259 -37.35742 -36.60245 -36.20686 -34.33191 -33.89246 -31.76830 -31.42168 -30.59401 -27.20123 -26.62341 -25.48480 -23.80319 -22.17706 -21.15462 -20.78082 -19.53373 -19.30110 -18.50706 -18.01209 -17.62745 -16.89833 -16.53412 -16.22125 -15.79917 -15.56774 -15.47925 -15.04650 -14.81259 -14.51162 -14.41202 -14.37599 -13.89699 -13.26834 -13.13665 -12.95593 -12.83189 -12.73526 -12.69458 -12.57485 -12.47874 -12.37804 -12.23699 -12.08132 -11.88821 -11.63181 -11.53059 -11.23176 -11.21015 -11.00274 -10.83144 -10.62737 -10.36529 -10.01456 -9.61735 -9.45300 -8.66308 -8.30458 -8.21941 -6.35049 -3.86810 -0.58253 1.88068 2.28447 2.55850 2.99586 3.04351 3.07321 3.12797 3.53412 3.67432 3.76844 3.89412 3.96983 4.06977 4.14117 4.18683 4.43543 4.51312 4.63994 4.71046 4.92102 5.01063 5.01533 5.13661 5.17679 5.25183 5.35295 5.42503 5.50505 5.54169 5.61162 5.63041 5.77097 5.85715 5.86915 5.97932 6.22601 6.94749 6.98149 7.40309 7.53539 7.71103 8.09660 8.54954 8.90473 9.37823 9.77068 10.77917 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.002505 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.351027 B =11173.311292 C =12130.316627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.052 0.948 4 C 0.117 3.883 5 N -0.724 5.724 6 C 0.547 3.453 7 O -0.515 6.515 8 C -0.597 4.597 9 H 0.164 0.836 10 C -0.104 4.104 11 C -0.120 4.120 12 C -0.583 4.583 13 S 2.396 3.604 14 O -0.920 6.920 15 O -0.923 6.923 16 N -0.664 5.664 17 C 0.045 3.955 18 C 0.448 3.552 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.347 0.653 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.371 0.629 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 1.802 -25.219 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.041 4.041 3 H 0.070 0.930 4 C -0.007 4.007 5 N -0.377 5.377 6 C 0.330 3.670 7 O -0.390 6.390 8 C -0.706 4.706 9 H 0.182 0.818 10 C -0.143 4.143 11 C -0.158 4.158 12 C -0.714 4.714 13 S 2.576 3.424 14 O -0.917 6.917 15 O -0.920 6.920 16 N -0.299 5.299 17 C -0.088 4.088 18 C 0.233 3.767 19 O -0.447 6.447 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.509 1.394 -25.402 25.681 hybrid contribution 0.836 1.377 0.640 1.734 sum 4.345 2.771 -24.762 25.293 Atomic orbital electron populations 1.21733 0.93049 1.03117 1.01696 1.21855 0.97410 0.96072 0.88788 0.93030 1.21737 0.78183 1.02560 0.98174 1.45994 1.08836 1.59613 1.23270 1.18884 0.86792 0.78468 0.82875 1.90718 1.68818 1.46751 1.32700 1.30694 1.04078 1.20038 1.15811 0.81805 1.21994 0.96887 0.94718 1.00692 1.22251 0.97794 0.95484 1.00309 1.30620 1.14800 1.10991 1.14952 1.09246 0.77253 0.77427 0.78499 1.93654 1.57852 1.67326 1.72881 1.93666 1.62989 1.70121 1.65178 1.60125 1.34820 1.32234 1.02727 1.21818 1.01708 0.93933 0.91336 1.19669 0.84749 0.88230 0.84003 1.90568 1.53954 1.15821 1.84369 1.42206 1.59961 1.11056 1.09569 1.19424 1.40415 0.97940 0.85717 0.86273 1.25046 0.97381 0.98460 0.95226 1.69618 1.44899 1.36649 1.00816 0.86667 0.79352 0.84833 0.78490 1.19572 1.20151 1.19510 0.91921 0.92296 0.91374 0.89735 0.90035 0.76393 0.88166 0.87770 0.89098 0.87759 0.84057 0.83911 0.83136 0.93597 0.89120 0.79655 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 2 C 0.07 0.75 2.81 -67.71 -0.19 0.56 16 3 H 0.05 0.51 7.80 -51.93 -0.41 0.11 16 4 C 0.12 1.25 5.31 -4.04 -0.02 1.23 16 5 N -0.72 -7.74 4.99 -60.29 -0.30 -8.05 16 6 C 0.55 6.17 6.35 -10.99 -0.07 6.10 16 7 O -0.51 -7.15 15.72 5.56 0.09 -7.06 16 8 C -0.60 -4.71 3.60 -27.27 -0.10 -4.81 16 9 H 0.16 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.10 -0.61 5.90 -25.67 -0.15 -0.77 16 11 C -0.12 -0.46 6.48 -25.19 -0.16 -0.62 16 12 C -0.58 -2.67 7.31 38.24 0.28 -2.39 16 13 S 2.40 20.38 5.95 -107.50 -0.64 19.74 16 14 O -0.92 -11.27 17.29 -57.71 -1.00 -12.27 16 15 O -0.92 -10.45 18.15 -57.71 -1.05 -11.50 16 16 N -0.66 -9.48 5.93 -107.99 -0.64 -10.12 16 17 C 0.04 0.69 5.97 -4.97 -0.03 0.66 16 18 C 0.45 9.80 7.82 -10.99 -0.09 9.72 16 19 O -0.57 -14.71 15.78 5.55 0.09 -14.62 16 20 N -0.59 -13.66 5.09 -10.97 -0.06 -13.72 16 21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 25 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.40 3.74 7.37 -40.82 -0.30 3.44 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.72 6.88 -51.93 -0.36 0.36 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.35 5.06 6.41 -39.29 -0.25 4.81 16 42 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 43 H 0.09 1.26 7.44 -51.93 -0.39 0.88 16 44 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -39.04 382.21 -8.64 -47.68 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.53 Total: 13.42 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.43 Total: 1.04 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.22 Total: -56.55 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.87 Total: -45.45 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Atomic # 16 Polarization: 20.38 SS G_CDS: -0.64 Total: 19.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.04 -8.64 -47.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.797 kcal (2) G-P(sol) polarization free energy of solvation -39.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds