Wall clock time and date at job start Wed Apr 1 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 5 5 N 1.46503 * 109.46953 * 184.99853 * 4 2 1 6 6 C 1.34774 * 119.99905 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99766 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.28258 * 27.88654 * 8 6 5 10 10 C 1.54165 * 110.31585 * 150.00204 * 8 6 5 11 11 C 1.53877 * 108.70312 * 146.80876 * 10 8 6 12 12 C 1.55046 * 106.62738 * 312.82171 * 11 10 8 13 13 S 1.82921 * 110.32002 * 265.66185 * 8 6 5 14 14 O 1.42103 * 109.35018 * 352.37618 * 13 8 6 15 15 O 1.42097 * 109.35152 * 125.57362 * 13 8 6 16 16 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 17 17 C 1.46906 * 110.99888 * 275.00023 * 16 2 1 18 18 C 1.50699 * 109.47140 * 179.97438 * 17 16 2 19 19 O 1.21289 * 119.99678 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99614 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99518 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00466 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00498 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99920 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47208 * 89.99447 * 25 23 21 27 27 H 1.48495 * 109.46914 * 210.00201 * 25 23 21 28 28 H 1.48508 * 109.46806 * 329.99819 * 25 23 21 29 29 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 30 30 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 31 31 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47450 * 305.00128 * 4 2 1 33 33 H 1.09008 * 109.47241 * 65.00366 * 4 2 1 34 34 H 0.96994 * 119.99763 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.65088 * 266.65950 * 10 8 6 36 36 H 1.09003 * 109.65097 * 26.96230 * 10 8 6 37 37 H 1.09006 * 110.02672 * 72.11346 * 11 10 8 38 38 H 1.08997 * 110.02832 * 193.52231 * 11 10 8 39 39 H 1.09002 * 110.79356 * 160.70218 * 12 11 10 40 40 H 1.08999 * 110.78503 * 284.16097 * 12 11 10 41 41 H 1.00901 * 111.00121 * 151.04609 * 16 2 1 42 42 H 1.09004 * 109.47040 * 299.99934 * 17 16 2 43 43 H 1.09000 * 109.47033 * 59.99886 * 17 16 2 44 44 H 0.96996 * 120.00269 * 359.97438 * 20 18 17 45 45 H 0.97002 * 120.00283 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1907 7 8 3.5699 -1.8841 -3.1395 8 6 5.6748 -1.5377 -2.1301 9 1 6.0108 -1.5553 -1.0934 10 6 6.1501 -2.8048 -2.8685 11 6 7.5167 -2.5163 -3.5142 12 6 7.3856 -1.1522 -4.2395 13 16 6.4492 -0.1448 -3.0280 14 8 5.4437 0.5946 -3.7074 15 8 7.3607 0.5225 -2.1659 16 7 2.0197 -0.6926 1.1994 17 6 2.0824 0.2225 2.3469 18 6 2.5873 -0.5220 3.5560 19 8 2.8677 -1.6989 3.4701 20 7 2.7272 0.1201 4.7327 21 6 3.1870 -0.5571 5.8325 22 1 3.4367 -1.6050 5.7562 23 6 3.3318 0.1049 7.0456 24 7 3.7720 -0.5442 8.1000 25 14 2.9006 1.9177 7.1777 26 1 1.4711 2.0603 7.5538 27 1 3.7514 2.5545 8.2149 28 1 3.1365 2.5792 5.8692 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9823 -0.4628 -0.4317 35 1 6.2460 -3.6277 -2.1601 36 1 5.4288 -3.0711 -3.6411 37 1 8.2878 -2.4579 -2.7459 38 1 7.7631 -3.2986 -4.2321 39 1 8.3675 -0.7177 -4.4271 40 1 6.8252 -1.2602 -5.1681 41 1 2.9173 -1.1206 1.0286 42 1 2.7589 1.0461 2.1183 43 1 1.0870 0.6162 2.5525 44 1 2.5033 1.0614 4.8013 45 1 3.8727 -0.0822 8.9469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491683132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:34 Heat of formation + Delta-G solvation = -167.195969 kcal Electronic energy + Delta-G solvation = -28696.081574 eV Core-core repulsion = 24453.762395 eV Total energy + Delta-G solvation = -4242.319179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.21812 -40.33715 -38.44004 -38.26402 -37.32688 -36.80466 -36.03482 -35.14920 -33.75807 -32.40486 -31.29418 -28.31364 -27.71926 -26.23794 -25.42317 -22.68023 -21.94732 -21.66318 -21.31852 -20.38024 -20.00094 -18.90425 -18.29515 -17.81090 -17.55439 -17.13143 -16.97991 -16.83169 -16.46917 -16.43710 -15.75812 -15.56147 -15.35733 -15.01389 -14.99690 -14.87418 -14.46246 -14.24463 -13.70665 -13.68143 -13.55986 -13.39142 -13.36616 -13.28102 -13.19148 -12.98549 -12.88468 -12.80420 -12.58149 -12.41565 -11.98332 -11.97925 -11.91932 -11.75915 -11.51791 -11.39705 -11.20967 -10.45130 -10.34211 -10.25374 -9.42434 -8.41707 -6.02654 -1.19685 1.21073 1.30344 1.35713 1.44497 1.52774 1.78086 1.94383 2.22752 2.47724 2.65009 2.89016 3.14739 3.22348 3.30836 3.41044 3.61664 3.66910 3.77402 4.05098 4.07729 4.15650 4.16260 4.31387 4.39688 4.54038 4.55609 4.58511 4.65516 4.76458 4.92112 4.97862 5.01535 5.03070 5.10189 5.19164 5.42955 5.52234 5.87653 5.99868 6.13812 6.28815 6.58849 6.86387 6.87502 7.39106 7.95139 8.75837 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.002505 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.351027 B =11173.311292 C =12130.316627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.725 5.725 6 C 0.538 3.462 7 O -0.547 6.547 8 C -0.595 4.595 9 H 0.181 0.819 10 C -0.106 4.106 11 C -0.118 4.118 12 C -0.554 4.554 13 S 2.385 3.615 14 O -0.968 6.968 15 O -0.959 6.959 16 N -0.682 5.682 17 C 0.058 3.942 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.230 1.230 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.407 0.593 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.343 0.657 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 4.008 -27.082 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.378 5.378 6 C 0.323 3.677 7 O -0.425 6.425 8 C -0.704 4.704 9 H 0.198 0.802 10 C -0.145 4.145 11 C -0.156 4.156 12 C -0.688 4.688 13 S 2.570 3.430 14 O -0.965 6.965 15 O -0.956 6.956 16 N -0.318 5.318 17 C -0.074 4.074 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.243 0.757 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.163 0.837 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.226 0.774 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.706 3.649 -27.263 27.755 hybrid contribution 0.794 0.482 1.142 1.472 sum 4.500 4.131 -26.122 26.827 Atomic orbital electron populations 1.21747 0.92165 1.02695 1.02868 1.21906 0.97936 0.96534 0.87014 0.91047 1.21705 0.78319 1.02003 0.98504 1.46067 1.08985 1.59336 1.23423 1.19430 0.88196 0.77734 0.82360 1.90692 1.69869 1.48122 1.33800 1.30702 1.01571 1.20879 1.17250 0.80166 1.22102 0.97889 0.93917 1.00583 1.22392 0.96671 0.95413 1.01152 1.30503 1.15016 1.09935 1.13382 1.09384 0.76823 0.77925 0.78889 1.93586 1.59713 1.69636 1.73567 1.93613 1.63277 1.71909 1.66774 1.60132 1.34840 1.32989 1.03792 1.21758 1.03454 0.93783 0.88448 1.20947 0.82368 0.87931 0.85169 1.90549 1.55357 1.18491 1.85388 1.42030 1.60493 1.11806 1.08829 1.18998 1.42414 0.96049 0.88281 0.92612 1.26109 0.96382 1.04959 0.93882 1.69800 1.46280 1.39627 1.01785 0.85377 0.79363 0.76571 0.80282 1.18238 1.20143 1.15326 0.91733 0.90110 0.92649 0.91030 0.89455 0.75692 0.87089 0.88846 0.87476 0.85101 0.81406 0.82445 0.83678 0.90074 0.86512 0.77449 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.41 71.98 0.68 -1.71 16 2 C 0.08 1.47 2.81 44.92 0.13 1.60 16 3 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 4 C 0.12 2.45 5.31 86.38 0.46 2.91 16 5 N -0.73 -15.32 4.99 -463.04 -2.31 -17.63 16 6 C 0.54 12.19 6.35 87.66 0.56 12.74 16 7 O -0.55 -15.45 15.72 -3.04 -0.05 -15.50 16 8 C -0.59 -9.01 3.60 30.24 0.11 -8.90 16 9 H 0.18 1.99 8.14 -2.39 -0.02 1.97 16 10 C -0.11 -1.07 5.90 31.28 0.18 -0.89 16 11 C -0.12 -0.51 6.48 31.59 0.20 -0.30 16 12 C -0.55 -3.50 7.31 72.68 0.53 -2.97 16 13 S 2.38 39.26 5.95 -56.49 -0.34 38.92 16 14 O -0.97 -24.16 17.29 -127.49 -2.20 -26.36 16 15 O -0.96 -21.50 18.15 -127.49 -2.31 -23.81 16 16 N -0.68 -18.51 5.93 -495.57 -2.94 -21.44 16 17 C 0.06 1.63 5.97 85.56 0.51 2.14 16 18 C 0.45 19.44 7.82 87.66 0.69 20.13 16 19 O -0.61 -32.99 15.78 -3.06 -0.05 -33.03 16 20 N -0.59 -27.03 5.09 -306.99 -1.56 -28.59 16 21 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.93 -55.90 13.96 21.66 0.30 -55.60 16 25 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 29 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.41 7.40 7.37 -92.71 -0.68 6.72 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.19 6.88 -2.39 -0.02 1.17 16 37 H 0.11 0.19 8.14 -2.38 -0.02 0.18 16 38 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.34 9.80 6.41 -89.69 -0.58 9.22 16 42 H 0.08 1.80 8.06 -2.38 -0.02 1.78 16 43 H 0.12 2.78 7.44 -2.39 -0.02 2.76 16 44 H 0.39 14.69 5.76 -92.71 -0.53 14.15 16 45 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -91.99 382.21 -4.99 -96.98 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.81 Total: 39.64 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.37 Total: 6.34 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -6.51 Total: -123.27 kcal Atomic # 8 Polarization: -94.10 SS G_CDS: -4.61 Total: -98.71 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Atomic # 16 Polarization: 39.26 SS G_CDS: -0.34 Total: 38.92 kcal Total: -91.99 -4.99 -96.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.215 kcal (2) G-P(sol) polarization free energy of solvation -91.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds