Wall clock time and date at job start Wed Apr 1 2020 07:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 N 1.46497 * 109.47185 * 175.00484 * 4 2 1 6 6 C 1.34786 * 119.99949 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99774 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.29033 * 39.29103 * 8 6 5 10 10 C 1.54171 * 110.31589 * 277.17502 * 8 6 5 11 11 C 1.54019 * 108.63178 * 213.27010 * 10 8 6 12 12 C 1.55046 * 106.69543 * 47.05383 * 11 10 8 13 13 S 1.82921 * 110.31875 * 161.41153 * 8 6 5 14 14 O 1.42104 * 109.35038 * 234.42355 * 13 8 6 15 15 O 1.42095 * 109.35148 * 7.62430 * 13 8 6 16 16 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 17 17 C 1.46901 * 110.99870 * 85.00132 * 16 2 1 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 2 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00095 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99386 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00393 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00292 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47100 * 90.00207 * 25 23 21 27 27 H 1.48501 * 109.47251 * 210.00227 * 25 23 21 28 28 H 1.48503 * 109.46881 * 330.00341 * 25 23 21 29 29 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 30 30 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 32 32 H 1.09012 * 109.46941 * 294.99864 * 4 2 1 33 33 H 1.08996 * 109.47415 * 54.99347 * 4 2 1 34 34 H 0.96993 * 120.00253 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.64604 * 333.05089 * 10 8 6 36 36 H 1.09003 * 109.64211 * 93.33677 * 10 8 6 37 37 H 1.09001 * 109.95021 * 287.75942 * 11 10 8 38 38 H 1.08998 * 110.06866 * 166.41087 * 11 10 8 39 39 H 1.08999 * 110.78929 * 199.34075 * 12 11 10 40 40 H 1.08998 * 110.95551 * 75.95744 * 12 11 10 41 41 H 1.00901 * 110.99869 * 321.04843 * 16 2 1 42 42 H 1.09004 * 109.47031 * 299.99620 * 17 16 2 43 43 H 1.08995 * 109.47111 * 59.99900 * 17 16 2 44 44 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 45 45 H 0.97001 * 119.99428 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4292 2.1907 7 8 3.5700 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1301 9 1 6.1040 -0.6214 1.7249 10 6 6.0898 -2.7487 1.2708 11 6 7.3901 -3.3390 1.8477 12 6 7.1842 -3.4573 3.3799 13 16 6.3549 -1.8761 3.7941 14 8 7.3364 -0.8980 4.1094 15 8 5.2869 -2.1269 4.6972 16 7 2.0197 -0.6925 -1.1995 17 6 2.0825 0.2226 -2.3469 18 6 2.5874 -0.5218 -3.5560 19 8 2.8677 -1.6987 -3.4702 20 7 2.7283 0.1206 -4.7325 21 6 3.1881 -0.5565 -5.8324 22 1 3.4377 -1.6045 -5.7560 23 6 3.3329 0.1055 -7.0454 24 7 3.0296 1.3808 -7.1382 25 14 3.9600 -0.8168 -8.5438 26 1 2.8114 -1.3998 -9.2827 27 1 4.6945 0.1209 -9.4307 28 1 4.8727 -1.9047 -8.1093 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4316 35 1 5.3029 -3.5026 1.2957 36 1 6.2553 -2.4285 0.2421 37 1 8.2272 -2.6746 1.6337 38 1 7.5763 -4.3237 1.4190 39 1 8.1420 -3.5380 3.8939 40 1 6.5439 -4.3052 3.6229 41 1 1.4495 -1.4979 -1.4101 42 1 1.0871 0.6163 -2.5526 43 1 2.7589 1.0462 -2.1182 44 1 2.5044 1.0619 -4.8011 45 1 3.1310 1.8431 -7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491683136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:39 Heat of formation + Delta-G solvation = -140.433182 kcal Electronic energy + Delta-G solvation = -28588.612494 eV Core-core repulsion = 24347.453837 eV Total energy + Delta-G solvation = -4241.158657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.01030 -38.53695 -37.25459 -37.07335 -36.44585 -35.95628 -34.23404 -33.81568 -31.45217 -31.12394 -30.34021 -26.81425 -26.38566 -25.47643 -23.98743 -22.05572 -21.11016 -20.78984 -19.40645 -18.95765 -18.00821 -17.72170 -17.31300 -16.54210 -16.20665 -15.95489 -15.69851 -15.30608 -15.21822 -14.83565 -14.64335 -14.52588 -14.17859 -14.02960 -13.89690 -13.43953 -13.18552 -12.94534 -12.76686 -12.68252 -12.42678 -12.26117 -12.23339 -12.16994 -12.09009 -11.76927 -11.65520 -11.49478 -11.47170 -11.11838 -11.06800 -10.95859 -10.56792 -10.46006 -10.29552 -9.97365 -9.58948 -9.08561 -8.59600 -8.20976 -8.04711 -6.49692 -3.90878 -0.25936 2.24677 2.38676 2.90338 3.11653 3.21160 3.26310 3.38064 3.80062 3.81311 3.96971 4.04746 4.20781 4.24361 4.31206 4.41867 4.60099 4.69624 4.76484 4.91138 5.04410 5.09257 5.13496 5.18402 5.19628 5.40694 5.42508 5.51679 5.55322 5.61163 5.62418 5.67316 5.80410 5.91564 5.98078 6.16965 6.36086 7.04171 7.40106 7.47414 7.49580 7.97652 8.06588 8.52184 9.09675 9.45513 9.96294 10.67868 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002383 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.147612 B =11746.493906 C =13309.584076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.132 3.868 5 N -0.701 5.701 6 C 0.530 3.470 7 O -0.510 6.510 8 C -0.597 4.597 9 H 0.159 0.841 10 C -0.102 4.102 11 C -0.119 4.119 12 C -0.591 4.591 13 S 2.407 3.593 14 O -0.937 6.937 15 O -0.895 6.895 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -3.221 17.484 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.007 3.993 5 N -0.353 5.353 6 C 0.312 3.688 7 O -0.385 6.385 8 C -0.707 4.707 9 H 0.176 0.824 10 C -0.141 4.141 11 C -0.158 4.158 12 C -0.721 4.721 13 S 2.585 3.415 14 O -0.934 6.934 15 O -0.892 6.892 16 N -0.297 5.297 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.373 -3.606 19.033 19.859 hybrid contribution -0.479 0.202 -2.440 2.495 sum 3.894 -3.404 16.593 17.380 Atomic orbital electron populations 1.22430 0.96097 1.02792 1.02699 1.21864 0.93513 0.98346 0.90662 0.89707 1.21413 0.79642 1.01274 0.96926 1.45725 1.07874 1.58685 1.22970 1.19128 0.86741 0.79369 0.83517 1.90961 1.68812 1.46710 1.32050 1.30768 1.04032 1.09624 1.26249 0.82360 1.21938 0.97812 0.93611 1.00743 1.22241 0.98181 1.04567 0.90773 1.30685 1.14173 1.21644 1.05549 1.08919 0.76453 0.78783 0.77309 1.93625 1.60230 1.57752 1.81761 1.93705 1.53033 1.84422 1.57996 1.60194 1.57684 1.09231 1.02551 1.21724 1.00113 0.95621 0.90899 1.19785 0.85346 0.88239 0.84191 1.90528 1.55445 1.16226 1.84632 1.41874 1.57592 1.12450 1.07969 1.19689 1.40134 0.96432 0.86762 0.87928 1.25267 0.97566 0.95762 0.99283 1.69610 1.48512 1.08843 1.27237 0.85860 0.78905 0.78974 0.80566 1.20399 1.20884 1.19385 0.91883 0.91926 0.91773 0.91017 0.91191 0.75222 0.89141 0.87691 0.89201 0.87980 0.84462 0.84171 0.82612 0.93666 0.89651 0.77474 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16 2 C 0.07 0.68 2.75 -67.71 -0.19 0.49 16 3 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 4 C 0.13 1.41 5.37 -4.05 -0.02 1.39 16 5 N -0.70 -7.75 5.39 -60.30 -0.32 -8.08 16 6 C 0.53 6.44 6.92 -10.98 -0.08 6.36 16 7 O -0.51 -8.03 14.18 -18.27 -0.26 -8.29 16 8 C -0.60 -5.26 3.60 -27.27 -0.10 -5.36 16 9 H 0.16 1.02 8.14 -51.93 -0.42 0.59 16 10 C -0.10 -0.74 5.95 -25.59 -0.15 -0.89 16 11 C -0.12 -0.64 6.48 -25.12 -0.16 -0.81 16 12 C -0.59 -3.54 7.31 38.24 0.28 -3.26 16 13 S 2.41 23.68 5.92 -107.50 -0.64 23.05 16 14 O -0.94 -11.56 18.15 -57.71 -1.05 -12.60 16 15 O -0.89 -12.82 15.38 -67.07 -1.03 -13.85 16 16 N -0.66 -8.88 5.32 -107.99 -0.57 -9.46 16 17 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 18 C 0.44 9.51 7.82 -10.99 -0.09 9.42 16 19 O -0.58 -14.70 15.78 5.55 0.09 -14.61 16 20 N -0.56 -13.43 5.29 -10.96 -0.06 -13.48 16 21 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 22 H 0.10 2.88 7.16 -52.48 -0.38 2.51 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 25 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 4.26 8.14 -40.82 -0.33 3.92 16 35 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.35 5.17 8.17 -39.29 -0.32 4.85 16 42 H 0.05 0.63 7.44 -51.93 -0.39 0.25 16 43 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 44 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -36.84 385.50 -9.48 -46.32 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.72 Total: 13.75 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.43 Total: -0.89 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.23 Total: -54.00 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.25 Total: -49.36 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 23.68 SS G_CDS: -0.64 Total: 23.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.84 -9.48 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.113 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds