Wall clock time and date at job start Wed Apr 1 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 N 1.46497 * 109.47185 * 175.00484 * 4 2 1 6 6 C 1.34786 * 119.99949 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99774 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.29033 * 39.29103 * 8 6 5 10 10 C 1.54171 * 110.31589 * 277.17502 * 8 6 5 11 11 C 1.54019 * 108.63178 * 213.27010 * 10 8 6 12 12 C 1.55046 * 106.69543 * 47.05383 * 11 10 8 13 13 S 1.82921 * 110.31875 * 161.41153 * 8 6 5 14 14 O 1.42104 * 109.35038 * 234.42355 * 13 8 6 15 15 O 1.42095 * 109.35148 * 7.62430 * 13 8 6 16 16 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 17 17 C 1.46901 * 110.99870 * 85.00132 * 16 2 1 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 2 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00095 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99386 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00393 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00292 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47100 * 90.00207 * 25 23 21 27 27 H 1.48501 * 109.47251 * 210.00227 * 25 23 21 28 28 H 1.48503 * 109.46881 * 330.00341 * 25 23 21 29 29 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 30 30 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 32 32 H 1.09012 * 109.46941 * 294.99864 * 4 2 1 33 33 H 1.08996 * 109.47415 * 54.99347 * 4 2 1 34 34 H 0.96993 * 120.00253 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.64604 * 333.05089 * 10 8 6 36 36 H 1.09003 * 109.64211 * 93.33677 * 10 8 6 37 37 H 1.09001 * 109.95021 * 287.75942 * 11 10 8 38 38 H 1.08998 * 110.06866 * 166.41087 * 11 10 8 39 39 H 1.08999 * 110.78929 * 199.34075 * 12 11 10 40 40 H 1.08998 * 110.95551 * 75.95744 * 12 11 10 41 41 H 1.00901 * 110.99869 * 321.04843 * 16 2 1 42 42 H 1.09004 * 109.47031 * 299.99620 * 17 16 2 43 43 H 1.08995 * 109.47111 * 59.99900 * 17 16 2 44 44 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 45 45 H 0.97001 * 119.99428 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4292 2.1907 7 8 3.5700 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1301 9 1 6.1040 -0.6214 1.7249 10 6 6.0898 -2.7487 1.2708 11 6 7.3901 -3.3390 1.8477 12 6 7.1842 -3.4573 3.3799 13 16 6.3549 -1.8761 3.7941 14 8 7.3364 -0.8980 4.1094 15 8 5.2869 -2.1269 4.6972 16 7 2.0197 -0.6925 -1.1995 17 6 2.0825 0.2226 -2.3469 18 6 2.5874 -0.5218 -3.5560 19 8 2.8677 -1.6987 -3.4702 20 7 2.7283 0.1206 -4.7325 21 6 3.1881 -0.5565 -5.8324 22 1 3.4377 -1.6045 -5.7560 23 6 3.3329 0.1055 -7.0454 24 7 3.0296 1.3808 -7.1382 25 14 3.9600 -0.8168 -8.5438 26 1 2.8114 -1.3998 -9.2827 27 1 4.6945 0.1209 -9.4307 28 1 4.8727 -1.9047 -8.1093 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4316 35 1 5.3029 -3.5026 1.2957 36 1 6.2553 -2.4285 0.2421 37 1 8.2272 -2.6746 1.6337 38 1 7.5763 -4.3237 1.4190 39 1 8.1420 -3.5380 3.8939 40 1 6.5439 -4.3052 3.6229 41 1 1.4495 -1.4979 -1.4101 42 1 1.0871 0.6163 -2.5526 43 1 2.7589 1.0462 -2.1182 44 1 2.5044 1.0619 -4.8011 45 1 3.1310 1.8431 -7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491683136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:38 Heat of formation + Delta-G solvation = -171.750123 kcal Electronic energy + Delta-G solvation = -28589.970498 eV Core-core repulsion = 24347.453837 eV Total energy + Delta-G solvation = -4242.516662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.96240 -40.14814 -38.26530 -38.01920 -37.20797 -36.73386 -35.95091 -35.03031 -33.25507 -32.17103 -31.14389 -27.94809 -27.50254 -26.25943 -25.56311 -22.62423 -22.01273 -21.66607 -21.08524 -19.91053 -19.75970 -18.57598 -18.16572 -17.64373 -17.25404 -16.95960 -16.67299 -16.56499 -16.29357 -16.16947 -15.95325 -15.55282 -15.27413 -15.03791 -14.78378 -14.70311 -14.35843 -13.78363 -13.67883 -13.59466 -13.43484 -13.41816 -13.17344 -13.09304 -13.02360 -12.96178 -12.79501 -12.76381 -12.52550 -12.38859 -12.11374 -12.01745 -11.90496 -11.65384 -11.48214 -11.22356 -10.93741 -10.31229 -10.03906 -9.98835 -9.34776 -8.45112 -5.93185 -0.98211 1.38989 1.43482 1.45735 1.55303 1.56728 2.05656 2.09178 2.29951 2.67682 2.88903 3.10072 3.23157 3.41261 3.52780 3.61186 3.73729 3.80866 3.85084 4.05941 4.10506 4.20440 4.32649 4.36355 4.50738 4.56997 4.62901 4.65228 4.69754 4.77197 4.88867 4.99716 5.01343 5.02315 5.12024 5.25236 5.43038 5.45564 5.89723 6.10572 6.36683 6.48791 6.62463 7.15334 7.15915 7.60052 8.14924 8.72169 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002383 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.147612 B =11746.493906 C =13309.584076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.101 0.899 4 C 0.131 3.869 5 N -0.696 5.696 6 C 0.524 3.476 7 O -0.551 6.551 8 C -0.590 4.590 9 H 0.182 0.818 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.562 4.562 13 S 2.395 3.605 14 O -0.970 6.970 15 O -0.951 6.951 16 N -0.671 5.671 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.621 6.621 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.416 0.584 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.346 0.654 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -3.217 16.846 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.348 5.348 6 C 0.307 3.693 7 O -0.430 6.430 8 C -0.700 4.700 9 H 0.200 0.800 10 C -0.142 4.142 11 C -0.156 4.156 12 C -0.695 4.695 13 S 2.579 3.421 14 O -0.967 6.967 15 O -0.948 6.948 16 N -0.303 5.303 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.288 -3.535 18.418 19.485 hybrid contribution -0.781 0.140 -2.218 2.355 sum 4.508 -3.395 16.200 17.155 Atomic orbital electron populations 1.22385 0.94918 1.02860 1.03463 1.21859 0.94365 0.98494 0.88644 0.88141 1.21443 0.79528 1.00858 0.97517 1.45763 1.08106 1.58092 1.22789 1.19626 0.88099 0.78620 0.82923 1.90946 1.70018 1.48453 1.33549 1.30688 1.01625 1.11768 1.25916 0.80016 1.22030 0.98644 0.92618 1.00885 1.22378 0.97528 1.06048 0.89684 1.30526 1.14753 1.17797 1.06453 1.08983 0.75692 0.80091 0.77299 1.93574 1.60416 1.60067 1.82653 1.93636 1.55196 1.85493 1.60514 1.60167 1.58339 1.09030 1.02760 1.21581 1.01285 0.95336 0.88542 1.20887 0.83286 0.87996 0.85103 1.90502 1.56540 1.18239 1.85454 1.41946 1.58407 1.12603 1.08255 1.19636 1.41918 0.95909 0.88520 0.90275 1.25986 0.97366 0.96554 1.01338 1.69669 1.48864 1.09659 1.28045 0.84976 0.78408 0.77892 0.77391 1.19894 1.19774 1.19609 0.91919 0.92289 0.90142 0.90390 0.92392 0.74659 0.90048 0.86927 0.87326 0.85805 0.81829 0.83009 0.83511 0.91640 0.87305 0.77034 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.16 71.98 0.66 -2.16 16 2 C 0.08 1.40 2.75 44.91 0.12 1.52 16 3 H 0.10 1.59 7.80 -2.39 -0.02 1.57 16 4 C 0.13 2.70 5.37 86.38 0.46 3.16 16 5 N -0.70 -14.90 5.39 -463.06 -2.50 -17.39 16 6 C 0.52 12.72 6.92 87.65 0.61 13.33 16 7 O -0.55 -17.97 14.18 19.78 0.28 -17.69 16 8 C -0.59 -9.91 3.60 30.24 0.11 -9.80 16 9 H 0.18 2.07 8.14 -2.39 -0.02 2.06 16 10 C -0.10 -1.29 5.95 31.34 0.19 -1.11 16 11 C -0.12 -0.89 6.48 31.64 0.20 -0.68 16 12 C -0.56 -5.36 7.31 72.68 0.53 -4.82 16 13 S 2.39 46.98 5.92 -56.49 -0.33 46.65 16 14 O -0.97 -24.01 18.15 -127.49 -2.31 -26.33 16 15 O -0.95 -28.68 15.38 -118.54 -1.82 -30.50 16 16 N -0.67 -16.94 5.32 -495.57 -2.63 -19.57 16 17 C 0.06 1.85 5.97 85.56 0.51 2.36 16 18 C 0.44 18.85 7.82 87.66 0.69 19.53 16 19 O -0.62 -31.46 15.78 -3.07 -0.05 -31.51 16 20 N -0.57 -27.44 5.29 -306.99 -1.62 -29.07 16 21 C -0.33 -17.83 9.68 84.04 0.81 -17.01 16 22 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 24 N -0.92 -47.97 13.05 21.66 0.28 -47.68 16 25 Si 0.99 41.31 29.55 68.60 2.03 43.33 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 30 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 8.04 8.14 -92.71 -0.75 7.28 16 35 H 0.08 1.19 7.85 -2.39 -0.02 1.17 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.35 9.83 8.17 -89.69 -0.73 9.10 16 42 H 0.07 1.66 7.44 -2.39 -0.02 1.64 16 43 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 44 H 0.40 17.99 7.90 -92.71 -0.73 17.26 16 45 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -82.18 385.50 -4.50 -86.68 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -1.18 Total: 38.95 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.36 Total: 4.13 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -6.47 Total: -113.72 kcal Atomic # 8 Polarization: -102.12 SS G_CDS: -3.90 Total: -106.03 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 46.98 SS G_CDS: -0.33 Total: 46.65 kcal Total: -82.18 -4.50 -86.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.069 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds