Wall clock time and date at job start Wed Apr 1 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 H 1.08994 * 110.28583 * 39.57425 * 8 6 5 10 10 C 1.54167 * 110.31804 * 277.46230 * 8 6 5 11 11 C 1.54025 * 108.63071 * 213.26908 * 10 8 6 12 12 C 1.55051 * 106.69514 * 47.05199 * 11 10 8 13 13 S 1.82917 * 110.32113 * 161.69463 * 8 6 5 14 14 O 1.42098 * 109.35411 * 234.42913 * 13 8 6 15 15 O 1.42105 * 109.35172 * 7.62399 * 13 8 6 16 16 N 1.46902 * 109.47150 * 119.99712 * 2 1 3 17 17 C 1.46906 * 111.00123 * 275.00224 * 16 2 1 18 18 C 1.50696 * 109.47341 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99671 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00090 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99952 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00292 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00020 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46994 * 90.00645 * 25 23 21 27 27 H 1.48498 * 109.47398 * 210.00332 * 25 23 21 28 28 H 1.48500 * 109.47098 * 330.00657 * 25 23 21 29 29 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 30 30 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 32 32 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 33 33 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.64694 * 333.03852 * 10 8 6 36 36 H 1.08993 * 109.65021 * 93.33964 * 10 8 6 37 37 H 1.08992 * 109.95363 * 287.75731 * 11 10 8 38 38 H 1.09004 * 110.07002 * 166.40462 * 11 10 8 39 39 H 1.09004 * 110.78756 * 199.34398 * 12 11 10 40 40 H 1.08996 * 110.95884 * 75.95694 * 12 11 10 41 41 H 1.00906 * 111.00106 * 38.95414 * 16 2 1 42 42 H 1.09002 * 109.46553 * 300.00180 * 17 16 2 43 43 H 1.08997 * 109.47248 * 59.99851 * 17 16 2 44 44 H 0.96993 * 119.99825 * 359.97438 * 20 18 17 45 45 H 0.96997 * 119.99865 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 1 6.0005 -1.7523 -1.1165 10 6 6.3207 -0.2228 -2.6296 11 6 7.6438 -0.5650 -3.3401 12 6 7.3409 -1.7423 -4.3026 13 16 6.2682 -2.8243 -3.2839 14 8 7.0752 -3.7533 -2.5733 15 8 5.1808 -3.2869 -4.0731 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2227 2.3470 18 6 2.5885 -0.5213 3.5558 19 8 2.8688 -1.6983 3.4700 20 7 2.7286 0.1208 4.7324 21 6 3.1885 -0.5562 5.8323 22 1 3.4381 -1.6042 5.7560 23 6 3.3324 0.1057 7.0455 24 7 3.7737 -0.5431 8.0997 25 14 2.9000 1.9182 7.1777 26 1 1.4703 2.0598 7.5537 27 1 3.7500 2.5555 8.2152 28 1 3.1357 2.5800 5.8694 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 5.6484 0.2753 -3.3282 36 1 6.5171 0.4335 -1.7819 37 1 8.3927 -0.8651 -2.6073 38 1 7.9989 0.2970 -3.9050 39 1 8.2589 -2.2598 -4.5816 40 1 6.8099 -1.3948 -5.1887 41 1 1.4496 -1.4979 1.4101 42 1 2.7588 1.0463 2.1182 43 1 1.0871 0.6164 2.5526 44 1 2.5040 1.0619 4.8011 45 1 3.8745 -0.0809 8.9465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491683141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:49 Heat of formation + Delta-G solvation = -132.291462 kcal Electronic energy + Delta-G solvation = -28582.106581 eV Core-core repulsion = 24341.300975 eV Total energy + Delta-G solvation = -4240.805606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.05327 -38.69632 -37.27867 -37.14929 -36.48844 -35.97485 -34.27897 -33.86639 -31.77110 -31.30109 -30.43107 -26.89375 -26.55382 -25.54371 -23.79784 -22.14702 -21.18298 -20.83478 -19.49230 -18.97755 -18.46054 -17.75934 -17.33462 -16.57405 -16.18798 -16.05421 -15.72358 -15.46404 -15.22031 -14.91717 -14.82733 -14.60405 -14.26310 -14.12610 -13.74521 -13.31462 -13.21588 -13.03287 -12.87482 -12.73071 -12.49372 -12.47323 -12.24482 -12.24083 -12.19471 -12.08449 -11.84189 -11.62441 -11.57727 -11.23399 -11.14022 -11.00041 -10.66010 -10.60438 -10.03563 -10.01111 -9.63959 -9.12696 -8.70735 -8.31491 -8.23800 -6.36888 -3.88812 -0.27109 2.24834 2.35980 2.86200 2.95946 3.00775 3.09772 3.36821 3.65699 3.76162 3.92929 3.99100 4.04332 4.15088 4.24017 4.35691 4.51453 4.61631 4.72382 4.78202 4.87985 5.02076 5.05947 5.10416 5.15299 5.26753 5.35537 5.36131 5.43448 5.44982 5.51161 5.58684 5.69417 5.79553 5.84011 5.93140 6.31678 6.92705 7.35960 7.41189 7.51454 8.02983 8.08102 8.52870 8.88817 9.35779 9.75192 10.76154 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.002388 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.847778 B =11722.941366 C =12750.580735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.132 3.868 5 N -0.701 5.701 6 C 0.531 3.469 7 O -0.509 6.509 8 C -0.601 4.601 9 H 0.163 0.837 10 C -0.101 4.101 11 C -0.119 4.119 12 C -0.593 4.593 13 S 2.408 3.592 14 O -0.931 6.931 15 O -0.893 6.893 16 N -0.665 5.665 17 C 0.047 3.953 18 C 0.447 3.553 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.356 0.644 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 8.193 -23.924 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.007 3.993 5 N -0.353 5.353 6 C 0.313 3.687 7 O -0.385 6.385 8 C -0.710 4.710 9 H 0.181 0.819 10 C -0.139 4.139 11 C -0.158 4.158 12 C -0.723 4.723 13 S 2.586 3.414 14 O -0.928 6.928 15 O -0.890 6.890 16 N -0.298 5.298 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.177 0.823 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.203 0.797 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.154 6.174 -24.607 25.565 hybrid contribution -0.778 2.672 1.244 3.048 sum 2.376 8.846 -23.364 25.095 Atomic orbital electron populations 1.22435 0.96048 1.02941 1.02648 1.21860 0.93538 0.98252 0.90641 0.89741 1.21411 0.79701 1.01381 0.96800 1.45718 1.07828 1.58620 1.23144 1.19113 0.86621 0.79366 0.83569 1.90965 1.68866 1.46243 1.32386 1.30803 1.02850 1.17840 1.19553 0.81906 1.21911 0.95863 0.94103 1.02047 1.22231 0.97815 0.98353 0.97392 1.30709 1.16120 1.13293 1.12142 1.08918 0.77007 0.77276 0.78169 1.93644 1.69396 1.56983 1.72807 1.93708 1.51033 1.77489 1.66807 1.60186 1.57918 1.09232 1.02474 1.21753 1.00116 0.95718 0.90988 1.19695 0.84980 0.88291 0.83760 1.90587 1.53817 1.15948 1.84195 1.42208 1.60050 1.11053 1.09562 1.19430 1.40446 0.97966 0.85659 0.86266 1.25052 0.97430 0.98419 0.95252 1.69622 1.44846 1.36641 1.00842 0.86665 0.79291 0.84891 0.78454 1.19667 1.20150 1.19531 0.91739 0.91791 0.91943 0.91010 0.91089 0.75247 0.89404 0.88160 0.89080 0.88144 0.84402 0.84247 0.82328 0.89552 0.93529 0.79729 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.16 37.16 0.34 -1.15 16 2 C 0.07 0.64 2.75 -67.71 -0.19 0.45 16 3 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 4 C 0.13 1.34 5.37 -4.04 -0.02 1.31 16 5 N -0.70 -7.43 5.39 -60.30 -0.32 -7.76 16 6 C 0.53 6.28 6.92 -10.98 -0.08 6.20 16 7 O -0.51 -7.88 14.18 -18.28 -0.26 -8.14 16 8 C -0.60 -5.15 3.60 -27.27 -0.10 -5.25 16 9 H 0.16 1.19 8.14 -51.93 -0.42 0.76 16 10 C -0.10 -0.52 5.95 -25.59 -0.15 -0.67 16 11 C -0.12 -0.48 6.48 -25.11 -0.16 -0.64 16 12 C -0.59 -3.15 7.31 38.24 0.28 -2.87 16 13 S 2.41 24.20 5.92 -107.50 -0.64 23.57 16 14 O -0.93 -12.31 18.15 -57.71 -1.05 -13.36 16 15 O -0.89 -13.00 15.38 -67.07 -1.03 -14.03 16 16 N -0.67 -8.62 5.31 -107.99 -0.57 -9.19 16 17 C 0.05 0.67 5.97 -4.97 -0.03 0.64 16 18 C 0.45 9.43 7.82 -10.99 -0.09 9.34 16 19 O -0.56 -14.38 15.78 5.54 0.09 -14.30 16 20 N -0.59 -13.31 5.09 -10.96 -0.06 -13.36 16 21 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 22 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 25 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.41 4.03 8.14 -40.82 -0.33 3.70 16 35 H 0.09 0.44 7.85 -51.93 -0.41 0.03 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.36 5.12 8.17 -39.29 -0.32 4.80 16 42 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 43 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 44 H 0.37 7.27 5.76 -40.82 -0.24 7.03 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -39.29 382.38 -9.13 -48.42 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.68 Total: 13.04 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.44 Total: -0.18 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.18 Total: -54.77 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -2.25 Total: -49.82 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Atomic # 16 Polarization: 24.20 SS G_CDS: -0.64 Total: 23.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.29 -9.13 -48.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.871 kcal (2) G-P(sol) polarization free energy of solvation -39.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds