Wall clock time and date at job start Wed Apr 1 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 H 1.08994 * 110.28583 * 39.57425 * 8 6 5 10 10 C 1.54167 * 110.31804 * 277.46230 * 8 6 5 11 11 C 1.54025 * 108.63071 * 213.26908 * 10 8 6 12 12 C 1.55051 * 106.69514 * 47.05199 * 11 10 8 13 13 S 1.82917 * 110.32113 * 161.69463 * 8 6 5 14 14 O 1.42098 * 109.35411 * 234.42913 * 13 8 6 15 15 O 1.42105 * 109.35172 * 7.62399 * 13 8 6 16 16 N 1.46902 * 109.47150 * 119.99712 * 2 1 3 17 17 C 1.46906 * 111.00123 * 275.00224 * 16 2 1 18 18 C 1.50696 * 109.47341 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99671 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00090 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99952 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00292 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00020 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46994 * 90.00645 * 25 23 21 27 27 H 1.48498 * 109.47398 * 210.00332 * 25 23 21 28 28 H 1.48500 * 109.47098 * 330.00657 * 25 23 21 29 29 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 30 30 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 32 32 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 33 33 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.64694 * 333.03852 * 10 8 6 36 36 H 1.08993 * 109.65021 * 93.33964 * 10 8 6 37 37 H 1.08992 * 109.95363 * 287.75731 * 11 10 8 38 38 H 1.09004 * 110.07002 * 166.40462 * 11 10 8 39 39 H 1.09004 * 110.78756 * 199.34398 * 12 11 10 40 40 H 1.08996 * 110.95884 * 75.95694 * 12 11 10 41 41 H 1.00906 * 111.00106 * 38.95414 * 16 2 1 42 42 H 1.09002 * 109.46553 * 300.00180 * 17 16 2 43 43 H 1.08997 * 109.47248 * 59.99851 * 17 16 2 44 44 H 0.96993 * 119.99825 * 359.97438 * 20 18 17 45 45 H 0.96997 * 119.99865 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 1 6.0005 -1.7523 -1.1165 10 6 6.3207 -0.2228 -2.6296 11 6 7.6438 -0.5650 -3.3401 12 6 7.3409 -1.7423 -4.3026 13 16 6.2682 -2.8243 -3.2839 14 8 7.0752 -3.7533 -2.5733 15 8 5.1808 -3.2869 -4.0731 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2227 2.3470 18 6 2.5885 -0.5213 3.5558 19 8 2.8688 -1.6983 3.4700 20 7 2.7286 0.1208 4.7324 21 6 3.1885 -0.5562 5.8323 22 1 3.4381 -1.6042 5.7560 23 6 3.3324 0.1057 7.0455 24 7 3.7737 -0.5431 8.0997 25 14 2.9000 1.9182 7.1777 26 1 1.4703 2.0598 7.5537 27 1 3.7500 2.5555 8.2152 28 1 3.1357 2.5800 5.8694 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 5.6484 0.2753 -3.3282 36 1 6.5171 0.4335 -1.7819 37 1 8.3927 -0.8651 -2.6073 38 1 7.9989 0.2970 -3.9050 39 1 8.2589 -2.2598 -4.5816 40 1 6.8099 -1.3948 -5.1887 41 1 1.4496 -1.4979 1.4101 42 1 2.7588 1.0463 2.1182 43 1 1.0871 0.6164 2.5526 44 1 2.5040 1.0619 4.8011 45 1 3.8745 -0.0809 8.9465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491683141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:02:48 Heat of formation + Delta-G solvation = -167.903399 kcal Electronic energy + Delta-G solvation = -28583.650831 eV Core-core repulsion = 24341.300975 eV Total energy + Delta-G solvation = -4242.349856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.96425 -40.29671 -38.28736 -38.02439 -37.19977 -36.72381 -36.00573 -35.04584 -33.73759 -32.21640 -31.15399 -28.08351 -27.49682 -26.24029 -25.38497 -22.60018 -22.00411 -21.67287 -21.27626 -20.30429 -19.76440 -18.56515 -18.15451 -17.65979 -17.21391 -17.06439 -16.70880 -16.65128 -16.40444 -16.19166 -15.80283 -15.50782 -15.16202 -14.95973 -14.80351 -14.65986 -14.50689 -14.20473 -13.80355 -13.67671 -13.50576 -13.41155 -13.18367 -13.10562 -13.03357 -12.96604 -12.81071 -12.76367 -12.50620 -12.39747 -11.99485 -11.97080 -11.88544 -11.63562 -11.49582 -11.20864 -10.93580 -10.42052 -10.23580 -10.03423 -9.35457 -8.40022 -6.01225 -0.98377 1.30951 1.37224 1.46231 1.47142 1.58795 1.98961 2.05591 2.24494 2.68958 2.72484 3.08526 3.16934 3.40111 3.41953 3.61269 3.74573 3.82675 3.85933 4.07652 4.09352 4.22043 4.22985 4.34717 4.47997 4.58613 4.59188 4.66575 4.70130 4.78281 4.89659 4.99901 5.00641 5.03831 5.14064 5.27712 5.46289 5.54161 5.91918 6.05359 6.32518 6.49386 6.61187 6.90355 7.16816 7.42146 7.99744 8.77854 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.002388 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.847778 B =11722.941366 C =12750.580735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 H 0.111 0.889 4 C 0.129 3.871 5 N -0.695 5.695 6 C 0.524 3.476 7 O -0.552 6.552 8 C -0.592 4.592 9 H 0.172 0.828 10 C -0.098 4.098 11 C -0.119 4.119 12 C -0.556 4.556 13 S 2.379 3.621 14 O -0.980 6.980 15 O -0.955 6.955 16 N -0.681 5.681 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.226 1.226 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.417 0.583 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.344 0.656 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 13.590 -25.600 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.129 0.871 4 C 0.005 3.995 5 N -0.347 5.347 6 C 0.307 3.693 7 O -0.430 6.430 8 C -0.703 4.703 9 H 0.190 0.810 10 C -0.137 4.137 11 C -0.157 4.157 12 C -0.690 4.690 13 S 2.565 3.435 14 O -0.977 6.977 15 O -0.952 6.952 16 N -0.313 5.313 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.787 3.213 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.149 1.149 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.340 11.550 -26.289 28.908 hybrid contribution -0.807 0.898 1.702 2.086 sum 2.534 12.448 -24.588 27.676 Atomic orbital electron populations 1.22399 0.94936 1.02648 1.03745 1.21876 0.94312 0.98730 0.88183 0.87108 1.21477 0.79453 1.00584 0.98018 1.45746 1.08094 1.57982 1.22855 1.19608 0.87937 0.78608 0.83098 1.90950 1.70048 1.47942 1.34095 1.30679 1.00768 1.19214 1.19669 0.81033 1.22086 0.96271 0.92158 1.03174 1.22417 0.97293 0.98579 0.97435 1.30494 1.15014 1.11955 1.11528 1.09359 0.76922 0.78548 0.78626 1.93576 1.69770 1.60205 1.74117 1.93632 1.53781 1.79825 1.67957 1.60167 1.58703 1.09247 1.03194 1.21689 1.02106 0.95325 0.87775 1.21096 0.82413 0.87944 0.85015 1.90573 1.55333 1.18860 1.85283 1.42023 1.60640 1.11839 1.08772 1.18985 1.42415 0.95960 0.88357 0.92956 1.26162 0.96424 1.05158 0.93855 1.69819 1.46425 1.39726 1.01843 0.85339 0.79210 0.76347 0.80416 1.18384 1.20318 1.14852 0.89906 0.92905 0.91478 0.89649 0.93387 0.74600 0.88822 0.85805 0.87904 0.84836 0.82149 0.82479 0.83664 0.85969 0.90364 0.77402 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.16 71.98 0.66 -1.75 16 2 C 0.08 1.24 2.75 44.91 0.12 1.36 16 3 H 0.11 1.24 7.80 -2.39 -0.02 1.22 16 4 C 0.13 2.46 5.37 86.38 0.46 2.93 16 5 N -0.70 -13.98 5.39 -463.07 -2.50 -16.48 16 6 C 0.52 12.38 6.92 87.66 0.61 12.99 16 7 O -0.55 -17.76 14.18 19.75 0.28 -17.48 16 8 C -0.59 -9.73 3.60 30.24 0.11 -9.63 16 9 H 0.17 2.43 8.14 -2.39 -0.02 2.41 16 10 C -0.10 -0.69 5.95 31.34 0.19 -0.51 16 11 C -0.12 -0.45 6.48 31.64 0.20 -0.24 16 12 C -0.56 -4.39 7.31 72.68 0.53 -3.86 16 13 S 2.38 49.70 5.92 -56.49 -0.33 49.36 16 14 O -0.98 -27.65 18.15 -127.49 -2.31 -29.96 16 15 O -0.95 -30.09 15.38 -118.54 -1.82 -31.92 16 16 N -0.68 -16.31 5.31 -495.57 -2.63 -18.94 16 17 C 0.06 1.57 5.97 85.55 0.51 2.08 16 18 C 0.45 18.53 7.82 87.66 0.69 19.22 16 19 O -0.62 -32.56 15.78 -3.08 -0.05 -32.61 16 20 N -0.59 -26.10 5.09 -306.99 -1.56 -27.66 16 21 C -0.33 -18.65 10.16 84.04 0.85 -17.80 16 22 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -55.83 13.96 21.66 0.30 -55.53 16 25 Si 0.97 37.08 27.74 68.60 1.90 38.98 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 27 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.23 -6.98 6.52 99.48 0.65 -6.33 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.07 0.88 7.45 -2.39 -0.02 0.86 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.42 7.35 8.14 -92.71 -0.75 6.59 16 35 H 0.09 0.61 7.85 -2.39 -0.02 0.59 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.13 -0.16 8.14 -2.38 -0.02 -0.18 16 39 H 0.16 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.34 9.76 8.17 -89.69 -0.73 9.03 16 42 H 0.12 2.28 8.06 -2.39 -0.02 2.26 16 43 H 0.08 1.55 7.44 -2.39 -0.02 1.53 16 44 H 0.39 13.91 5.76 -92.71 -0.53 13.38 16 45 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -96.79 382.38 -4.36 -101.15 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -1.04 Total: 36.79 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.40 Total: 4.29 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -6.39 Total: -118.60 kcal Atomic # 8 Polarization: -108.07 SS G_CDS: -3.90 Total: -111.97 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.90 Total: 38.98 kcal Atomic # 16 Polarization: 49.70 SS G_CDS: -0.33 Total: 49.36 kcal Total: -96.79 -4.36 -101.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491683141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.754 kcal (2) G-P(sol) polarization free energy of solvation -96.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds