Wall clock time and date at job start Wed Apr 1 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99976 * 2 1 3 5 5 N 1.46895 * 109.46747 * 185.00259 * 4 2 1 6 6 C 1.46902 * 110.99788 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46907 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00434 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.37104 * 120.00175 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99599 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00382 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99928 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00163 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46921 * 60.00030 * 14 12 10 16 16 H 1.48500 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46589 * 299.99922 * 14 12 10 18 18 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 19 19 C 1.46499 * 120.00225 * 59.99572 * 18 2 1 20 20 C 1.34780 * 119.99546 * 240.00135 * 18 2 1 21 21 O 1.21279 * 120.00031 * 359.97438 * 20 18 2 22 22 C 1.50699 * 119.99563 * 180.02562 * 20 18 2 23 23 C 1.53047 * 113.15107 * 280.36619 * 22 20 18 24 24 S 1.81427 * 89.89024 * 211.85469 * 23 22 20 25 25 O 1.42100 * 112.75707 * 280.47783 * 24 23 22 26 26 O 1.42100 * 112.75195 * 136.72947 * 24 23 22 27 27 C 1.53048 * 113.15206 * 179.97438 * 22 20 18 28 28 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 29 29 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 30 30 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47059 * 305.00390 * 4 2 1 32 32 H 1.09000 * 109.47062 * 65.00459 * 4 2 1 33 33 H 1.00894 * 111.00510 * 56.04336 * 5 4 2 34 34 H 1.08998 * 109.46931 * 299.99594 * 6 5 4 35 35 H 1.09004 * 109.47343 * 60.00181 * 6 5 4 36 36 H 0.96995 * 120.00657 * 359.97438 * 9 7 6 37 37 H 0.97003 * 120.00110 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47391 * 270.00005 * 19 18 2 39 39 H 1.09001 * 109.46813 * 150.00061 * 19 18 2 40 40 H 1.09004 * 109.47041 * 30.00189 * 19 18 2 41 41 H 1.08995 * 112.50034 * 50.21209 * 22 20 18 42 42 H 1.08992 * 113.15017 * 327.11685 * 23 22 20 43 43 H 1.09003 * 113.14129 * 96.59637 * 23 22 20 44 44 H 1.09000 * 113.14697 * 263.40587 * 27 22 20 45 45 H 1.09005 * 113.14585 * 32.88278 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1904 6 6 4.0303 -1.5149 -2.3767 7 6 5.5317 -1.6035 -2.2813 8 8 6.1067 -1.1386 -1.3199 9 7 6.2355 -2.1983 -3.2647 10 6 7.6015 -2.2784 -3.1782 11 1 8.1134 -1.8652 -2.3217 12 6 8.3271 -2.8921 -4.1918 13 7 7.7041 -3.3954 -5.2337 14 14 10.1881 -3.0019 -4.0735 15 1 10.5626 -3.7616 -2.8538 16 1 10.7202 -3.6970 -5.2731 17 1 10.7609 -1.6338 -4.0001 18 7 2.0183 -0.6907 1.1961 19 6 1.6643 -2.0932 1.4280 20 6 2.7932 -0.0357 2.0833 21 8 3.0865 1.1253 1.8912 22 6 3.2959 -0.7463 3.3135 23 6 2.2471 -0.8420 4.4240 24 16 3.5633 -0.7563 5.6697 25 8 4.2245 -2.0001 5.8571 26 8 3.2401 0.1055 6.7523 27 6 4.1603 0.1425 4.2109 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7198 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.7995 -1.2884 -0.3433 34 1 3.6095 -2.5189 -2.4309 35 1 3.7558 -0.9571 -3.2721 36 1 5.7758 -2.5698 -4.0338 37 1 8.2107 -3.8235 -5.9415 38 1 0.7375 -2.1444 1.9993 39 1 2.4628 -2.5819 1.9863 40 1 1.5294 -2.5969 0.4707 41 1 3.7632 -1.7031 3.0807 42 1 1.5737 0.0145 4.4524 43 1 1.7138 -1.7927 4.4287 44 1 5.2289 0.0163 4.0372 45 1 3.8559 1.1891 4.1981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496066762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:30 Heat of formation + Delta-G solvation = -138.238811 kcal Electronic energy + Delta-G solvation = -28936.416560 eV Core-core repulsion = 24695.353057 eV Total energy + Delta-G solvation = -4241.063502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40542 -40.16153 -38.48040 -38.24984 -37.19283 -36.68788 -36.15760 -35.47422 -33.29886 -32.61235 -28.98882 -27.83091 -27.59089 -26.72434 -25.77327 -24.51465 -21.90476 -21.08782 -20.00378 -19.86883 -19.79971 -18.80503 -17.94784 -17.72421 -17.33794 -17.20140 -17.04549 -16.51713 -16.31724 -16.22643 -16.00460 -15.41566 -15.37736 -14.97850 -14.84406 -14.29919 -14.19626 -14.04593 -13.87097 -13.53991 -13.37327 -13.32648 -13.31066 -13.18569 -13.09121 -12.96024 -12.80942 -12.77887 -12.57424 -12.46370 -12.39747 -12.13426 -12.02206 -11.84514 -11.52543 -11.34565 -10.75281 -10.39569 -10.03753 -9.68939 -9.27531 -8.48555 -5.97397 -0.85761 0.98345 1.38208 1.40402 1.51154 1.58611 1.96980 2.03114 2.27686 2.70458 2.89206 3.03788 3.13601 3.18677 3.45662 3.52380 3.77633 3.91955 3.99845 4.18441 4.24131 4.26375 4.28111 4.34801 4.46272 4.48585 4.55645 4.67341 4.69548 4.75483 4.81546 4.83005 4.94355 4.98964 5.12880 5.28703 5.38746 5.60507 5.87418 6.09495 6.33448 6.40074 6.58420 7.10770 7.16528 7.54029 8.09953 8.68581 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.002622 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.441841 B =10678.068365 C =12554.792210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.074 0.926 4 C 0.051 3.949 5 N -0.687 5.687 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.336 4.336 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.274 1.274 18 N -0.603 5.603 19 C 0.057 3.943 20 C 0.533 3.467 21 O -0.573 6.573 22 C -0.106 4.106 23 C -0.565 4.565 24 S 2.460 3.540 25 O -0.936 6.936 26 O -0.954 6.954 27 C -0.594 4.594 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.340 0.660 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.170 0.830 44 H 0.129 0.871 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 -0.450 14.979 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.092 0.908 4 C -0.078 4.078 5 N -0.320 5.320 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.193 1.193 17 H -0.200 1.200 18 N -0.336 5.336 19 C -0.085 4.085 20 C 0.320 3.680 21 O -0.452 6.452 22 C -0.129 4.129 23 C -0.695 4.695 24 S 2.642 3.358 25 O -0.934 6.934 26 O -0.951 6.951 27 C -0.722 4.722 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.188 0.812 44 H 0.147 0.853 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.381 0.644 16.206 25.272 hybrid contribution 0.633 -0.608 -1.682 1.897 sum -18.748 0.036 14.524 23.716 Atomic orbital electron populations 1.22001 0.91597 1.03729 1.03119 1.21162 0.95522 0.97068 0.83054 0.90801 1.22451 0.86140 1.00507 0.98716 1.59952 1.10608 1.57501 1.03950 1.21539 0.90226 0.98994 0.95836 1.20940 0.90750 0.82202 0.83849 1.90501 1.72863 1.52741 1.35104 1.41914 1.06823 1.51590 1.20547 1.19609 0.83121 1.37052 1.06747 0.90568 1.26011 1.04846 0.95734 0.94470 1.69655 1.38364 1.38374 1.09593 0.85016 0.76852 0.78558 0.78085 1.19573 1.19289 1.19969 1.47894 1.50118 1.13620 1.21970 1.22215 1.02920 0.79538 1.03804 1.20194 0.77456 0.86257 0.84087 1.90698 1.58447 1.19120 1.76929 1.21750 0.96542 1.01220 0.93429 1.30800 1.14278 1.14387 1.09997 1.06977 0.79306 0.74732 0.74806 1.93700 1.71816 1.41053 1.86801 1.93606 1.81896 1.66703 1.52899 1.31031 1.10365 1.12818 1.17992 0.92213 0.90248 0.90259 0.92495 0.89083 0.84069 0.91108 0.87874 0.76903 0.91217 0.89167 0.89710 0.90184 0.83023 0.82400 0.81171 0.85270 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.19 71.98 0.66 -1.09 16 2 C 0.14 2.69 2.95 44.99 0.13 2.83 16 3 H 0.07 2.05 6.90 -2.39 -0.02 2.03 16 4 C 0.05 1.06 4.98 86.30 0.43 1.49 16 5 N -0.69 -21.79 6.11 -517.93 -3.17 -24.96 16 6 C 0.07 2.23 6.17 85.56 0.53 2.76 16 7 C 0.43 20.91 7.82 87.66 0.69 21.60 16 8 O -0.63 -35.59 15.78 -3.05 -0.05 -35.64 16 9 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 10 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 13 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 14 Si 0.99 43.14 29.55 68.60 2.03 45.16 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 N -0.60 -11.15 1.83 -822.58 -1.51 -12.66 16 19 C 0.06 0.57 9.16 127.77 1.17 1.74 16 20 C 0.53 12.72 7.18 87.66 0.63 13.35 16 21 O -0.57 -19.45 15.27 -3.02 -0.05 -19.50 16 22 C -0.11 -1.68 2.64 -11.51 -0.03 -1.71 16 23 C -0.56 -4.26 7.31 72.00 0.53 -3.73 16 24 S 2.46 30.02 7.55 -56.49 -0.43 29.59 16 25 O -0.94 -17.18 18.18 -127.88 -2.32 -19.51 16 26 O -0.95 -18.29 18.18 -127.88 -2.32 -20.62 16 27 C -0.59 -9.74 7.18 72.00 0.52 -9.22 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.64 7.67 -2.39 -0.02 0.63 16 31 H 0.06 0.90 6.88 -2.39 -0.02 0.88 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.34 11.46 7.56 -89.70 -0.68 10.78 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 37 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.70 6.24 -2.39 -0.01 0.68 16 40 H 0.08 0.74 6.53 -2.38 -0.02 0.73 16 41 H 0.15 1.89 7.00 -2.39 -0.02 1.87 16 42 H 0.16 1.02 8.11 -2.39 -0.02 1.00 16 43 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.15 2.66 7.57 -2.38 -0.02 2.64 16 Total: -1.00 -89.61 384.84 -3.00 -92.61 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.37 Total: 36.23 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 6.53 Total: 9.49 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -6.02 Total: -117.82 kcal Atomic # 8 Polarization: -90.52 SS G_CDS: -4.74 Total: -95.26 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 30.02 SS G_CDS: -0.43 Total: 29.59 kcal Total: -89.61 -3.00 -92.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496066762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.628 kcal (2) G-P(sol) polarization free energy of solvation -89.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds