Wall clock time and date at job start Wed Apr 1 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47239 * 120.00117 * 2 1 3 5 5 N 1.46892 * 109.46975 * 174.99851 * 4 2 1 6 6 C 1.46901 * 110.99715 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47163 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99783 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99993 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00128 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99586 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00033 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99939 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99721 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47294 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47196 * 120.00191 * 14 12 10 17 17 H 1.48500 * 109.46784 * 239.99866 * 14 12 10 18 18 N 1.46502 * 109.47061 * 240.00300 * 2 1 3 19 19 C 1.46497 * 119.99544 * 300.00032 * 18 2 1 20 20 C 1.34771 * 120.00110 * 119.99827 * 18 2 1 21 21 O 1.21278 * 120.00181 * 359.97438 * 20 18 2 22 22 C 1.50706 * 119.99809 * 179.97438 * 20 18 2 23 23 C 1.55881 * 110.82184 * 180.02562 * 22 20 18 24 24 S 1.83082 * 82.43940 * 217.26188 * 23 22 20 25 25 O 1.42105 * 111.36329 * 130.46465 * 24 23 22 26 26 O 1.42094 * 111.36046 * 269.41323 * 24 23 22 27 27 C 1.56453 * 110.95001 * 66.21887 * 22 20 18 28 28 H 1.08997 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46973 * 299.99897 * 1 2 3 30 30 H 1.09006 * 109.46982 * 59.99532 * 1 2 3 31 31 H 1.09006 * 109.46894 * 295.00157 * 4 2 1 32 32 H 1.08995 * 109.47013 * 54.99469 * 4 2 1 33 33 H 1.00898 * 111.00166 * 303.95286 * 5 4 2 34 34 H 1.09007 * 109.47561 * 299.99942 * 6 5 4 35 35 H 1.08998 * 109.47468 * 60.00452 * 6 5 4 36 36 H 0.97000 * 120.00161 * 359.97438 * 9 7 6 37 37 H 0.97003 * 119.99307 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.46864 * 269.99841 * 19 18 2 39 39 H 1.08993 * 109.47617 * 30.00033 * 19 18 2 40 40 H 1.09001 * 109.47435 * 150.00295 * 19 18 2 41 41 H 1.09000 * 110.40129 * 303.17360 * 22 20 18 42 42 H 1.08999 * 114.38588 * 103.86909 * 23 22 20 43 43 H 1.09005 * 114.38110 * 330.65164 * 23 22 20 44 44 H 1.08996 * 114.37890 * 29.32933 * 27 22 20 45 45 H 1.08994 * 114.49891 * 255.98685 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1903 6 6 4.0304 -1.5149 2.3766 7 6 5.5318 -1.6034 2.2812 8 8 6.1068 -1.1385 1.3198 9 7 6.2355 -2.1991 3.2641 10 6 7.6015 -2.2792 3.1776 11 1 8.1134 -1.8653 2.3215 12 6 8.3270 -2.8930 4.1913 13 7 7.7040 -3.3962 5.2332 14 14 10.1881 -3.0027 4.0729 15 1 10.6423 -2.3657 2.8107 16 1 10.7999 -2.3013 5.2300 17 1 10.6015 -4.4289 4.0837 18 7 2.0184 -0.6906 -1.1962 19 6 1.6644 -2.0931 -1.4280 20 6 2.7931 -0.0356 -2.0834 21 8 3.0858 1.1257 -1.8917 22 6 3.2959 -0.7462 -3.3136 23 6 4.1679 0.2066 -4.1864 24 16 3.3444 -0.6878 -5.5553 25 8 2.8030 0.2137 -6.5110 26 8 4.0937 -1.8276 -5.9534 27 6 2.1132 -1.1155 -4.2689 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 3.7995 -1.2884 0.3432 34 1 3.7559 -0.9571 3.2720 35 1 3.6096 -2.5189 2.4308 36 1 5.7757 -2.5706 4.0332 37 1 8.2106 -3.8250 5.9406 38 1 2.4157 -2.7376 -0.9717 39 1 0.6904 -2.3001 -0.9847 40 1 1.6237 -2.2852 -2.5002 41 1 3.8575 -1.6377 -3.0346 42 1 5.2407 0.0281 -4.1133 43 1 3.8976 1.2599 -4.1103 44 1 1.2630 -0.4355 -4.2160 45 1 1.8287 -2.1675 -4.2502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496066764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:35 Heat of formation + Delta-G solvation = -101.396372 kcal Electronic energy + Delta-G solvation = -29007.030658 eV Core-core repulsion = 24767.564764 eV Total energy + Delta-G solvation = -4239.465894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.59916 -38.36384 -37.57751 -37.22342 -36.39985 -35.62461 -34.65831 -33.79404 -31.79482 -31.21317 -27.99562 -27.65559 -27.20822 -25.20173 -24.55768 -23.19571 -21.03845 -19.39866 -19.20007 -19.08302 -18.06271 -17.91354 -17.12730 -16.93209 -16.51270 -16.40783 -15.82865 -15.44397 -15.22756 -14.68240 -14.54241 -14.26982 -13.99866 -13.95763 -13.86157 -13.54524 -13.37893 -13.08819 -12.72117 -12.68572 -12.56352 -12.51881 -12.47524 -12.38460 -12.18683 -11.94501 -11.72137 -11.63898 -11.46893 -11.13395 -11.04526 -10.97441 -10.78503 -10.35843 -10.24635 -9.88873 -9.54282 -8.95123 -8.47015 -8.09010 -7.98294 -6.44166 -3.84915 -0.42136 1.81572 2.30436 2.61113 3.08769 3.14817 3.25619 3.33068 3.49581 3.56972 3.63187 3.87795 4.01714 4.20292 4.31424 4.49495 4.64353 4.73486 4.79718 4.89473 4.92533 5.03399 5.12269 5.15130 5.22011 5.22794 5.32767 5.33384 5.45424 5.47496 5.54969 5.72602 5.78219 5.92550 5.95299 6.22737 6.31499 7.08742 7.15944 7.53350 7.60146 7.93762 8.04235 8.58811 9.15793 9.51691 10.03163 10.73671 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.002608 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.584401 B =10732.475339 C =12480.104809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.112 0.888 4 C 0.050 3.950 5 N -0.664 5.664 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.606 5.606 19 C 0.060 3.940 20 C 0.542 3.458 21 O -0.515 6.515 22 C -0.169 4.169 23 C -0.532 4.532 24 S 2.378 3.622 25 O -0.933 6.933 26 O -0.918 6.918 27 C -0.563 4.563 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.347 0.653 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 1.324 -14.585 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.130 0.870 4 C -0.081 4.081 5 N -0.297 5.297 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.340 5.340 19 C -0.084 4.084 20 C 0.328 3.672 21 O -0.390 6.390 22 C -0.193 4.193 23 C -0.662 4.662 24 S 2.561 3.439 25 O -0.930 6.930 26 O -0.915 6.915 27 C -0.691 4.691 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.171 0.829 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.569 2.592 -15.825 23.787 hybrid contribution 0.239 -1.450 1.781 2.309 sum -17.330 1.142 -14.044 22.335 Atomic orbital electron populations 1.22111 0.94574 1.02280 1.02817 1.21230 0.93404 0.99005 0.83007 0.87015 1.22335 0.89099 0.98795 0.97852 1.59982 1.07445 1.57397 1.04827 1.21687 0.95176 0.96808 0.94538 1.19801 0.88066 0.84260 0.85341 1.90532 1.71105 1.51387 1.33545 1.41871 1.07436 1.50887 1.19864 1.19753 0.81484 1.34992 1.06567 0.87886 1.25265 1.00729 0.96780 0.95190 1.69622 1.36629 1.38699 1.09411 0.85799 0.82187 0.77878 0.78485 1.19188 1.20712 1.20757 1.47732 1.51066 1.12402 1.22766 1.22073 1.01645 0.81717 1.02915 1.19539 0.77938 0.86647 0.83107 1.90735 1.56230 1.16537 1.75460 1.23496 0.95660 1.01890 0.98228 1.30817 1.10286 1.10528 1.14587 1.10332 0.79464 0.77233 0.76885 1.93600 1.76998 1.63618 1.58765 1.93691 1.68350 1.48632 1.80870 1.31082 1.09837 1.12218 1.15999 0.92285 0.91001 0.92023 0.89856 0.95340 0.83357 0.89543 0.94085 0.77494 0.91920 0.92348 0.90505 0.90104 0.84220 0.82962 0.82154 0.82946 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.17 37.16 0.34 -0.78 16 2 C 0.14 1.40 2.95 -67.93 -0.20 1.20 16 3 H 0.11 1.46 6.90 -51.93 -0.36 1.10 16 4 C 0.05 0.57 5.03 -3.83 -0.02 0.55 16 5 N -0.66 -10.73 6.11 -115.06 -0.70 -11.43 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.43 7.82 -10.98 -0.09 10.34 16 8 O -0.58 -15.99 15.78 5.55 0.09 -15.90 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 14 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 N -0.61 -5.86 1.83 -173.94 -0.32 -6.18 16 19 C 0.06 0.38 9.29 59.85 0.56 0.94 16 20 C 0.54 6.26 7.11 -10.98 -0.08 6.18 16 21 O -0.52 -8.03 15.04 5.56 0.08 -7.95 16 22 C -0.17 -1.33 2.33 -88.37 -0.21 -1.54 16 23 C -0.53 -4.09 8.20 38.70 0.32 -3.78 16 24 S 2.38 16.33 6.80 -107.50 -0.73 15.60 16 25 O -0.93 -9.72 18.18 -57.47 -1.04 -10.76 16 26 O -0.92 -9.30 18.18 -57.47 -1.04 -10.35 16 27 C -0.56 -2.53 6.98 39.02 0.27 -2.26 16 28 H 0.06 0.34 6.66 -51.93 -0.35 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.28 7.84 -51.93 -0.41 -0.12 16 33 H 0.35 5.85 7.55 -39.29 -0.30 5.56 16 34 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 39 H 0.08 0.38 6.43 -51.93 -0.33 0.05 16 40 H 0.08 0.33 4.28 -51.93 -0.22 0.11 16 41 H 0.14 0.94 8.05 -51.93 -0.42 0.52 16 42 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.16 1.32 7.40 -51.93 -0.38 0.94 16 44 H 0.15 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.15 0.27 6.94 -51.93 -0.36 -0.09 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -40.09 381.86 -7.99 -48.08 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.34 Total: 11.48 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.63 Total: 3.72 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.36 Total: -55.73 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.92 Total: -44.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 16.33 SS G_CDS: -0.73 Total: 15.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.09 -7.99 -48.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496066764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.315 kcal (2) G-P(sol) polarization free energy of solvation -40.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds