Wall clock time and date at job start Wed Apr 1 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47239 * 120.00117 * 2 1 3 5 5 N 1.46892 * 109.46975 * 174.99851 * 4 2 1 6 6 C 1.46901 * 110.99715 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47163 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99783 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99993 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00128 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99586 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00033 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99939 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99721 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47294 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47196 * 120.00191 * 14 12 10 17 17 H 1.48500 * 109.46784 * 239.99866 * 14 12 10 18 18 N 1.46502 * 109.47061 * 240.00300 * 2 1 3 19 19 C 1.46497 * 119.99544 * 300.00032 * 18 2 1 20 20 C 1.34771 * 120.00110 * 119.99827 * 18 2 1 21 21 O 1.21278 * 120.00181 * 359.97438 * 20 18 2 22 22 C 1.50706 * 119.99809 * 179.97438 * 20 18 2 23 23 C 1.55881 * 110.82184 * 180.02562 * 22 20 18 24 24 S 1.83082 * 82.43940 * 217.26188 * 23 22 20 25 25 O 1.42105 * 111.36329 * 130.46465 * 24 23 22 26 26 O 1.42094 * 111.36046 * 269.41323 * 24 23 22 27 27 C 1.56453 * 110.95001 * 66.21887 * 22 20 18 28 28 H 1.08997 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46973 * 299.99897 * 1 2 3 30 30 H 1.09006 * 109.46982 * 59.99532 * 1 2 3 31 31 H 1.09006 * 109.46894 * 295.00157 * 4 2 1 32 32 H 1.08995 * 109.47013 * 54.99469 * 4 2 1 33 33 H 1.00898 * 111.00166 * 303.95286 * 5 4 2 34 34 H 1.09007 * 109.47561 * 299.99942 * 6 5 4 35 35 H 1.08998 * 109.47468 * 60.00452 * 6 5 4 36 36 H 0.97000 * 120.00161 * 359.97438 * 9 7 6 37 37 H 0.97003 * 119.99307 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.46864 * 269.99841 * 19 18 2 39 39 H 1.08993 * 109.47617 * 30.00033 * 19 18 2 40 40 H 1.09001 * 109.47435 * 150.00295 * 19 18 2 41 41 H 1.09000 * 110.40129 * 303.17360 * 22 20 18 42 42 H 1.08999 * 114.38588 * 103.86909 * 23 22 20 43 43 H 1.09005 * 114.38110 * 330.65164 * 23 22 20 44 44 H 1.08996 * 114.37890 * 29.32933 * 27 22 20 45 45 H 1.08994 * 114.49891 * 255.98685 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1903 6 6 4.0304 -1.5149 2.3766 7 6 5.5318 -1.6034 2.2812 8 8 6.1068 -1.1385 1.3198 9 7 6.2355 -2.1991 3.2641 10 6 7.6015 -2.2792 3.1776 11 1 8.1134 -1.8653 2.3215 12 6 8.3270 -2.8930 4.1913 13 7 7.7040 -3.3962 5.2332 14 14 10.1881 -3.0027 4.0729 15 1 10.6423 -2.3657 2.8107 16 1 10.7999 -2.3013 5.2300 17 1 10.6015 -4.4289 4.0837 18 7 2.0184 -0.6906 -1.1962 19 6 1.6644 -2.0931 -1.4280 20 6 2.7931 -0.0356 -2.0834 21 8 3.0858 1.1257 -1.8917 22 6 3.2959 -0.7462 -3.3136 23 6 4.1679 0.2066 -4.1864 24 16 3.3444 -0.6878 -5.5553 25 8 2.8030 0.2137 -6.5110 26 8 4.0937 -1.8276 -5.9534 27 6 2.1132 -1.1155 -4.2689 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 3.7995 -1.2884 0.3432 34 1 3.7559 -0.9571 3.2720 35 1 3.6096 -2.5189 2.4308 36 1 5.7757 -2.5706 4.0332 37 1 8.2106 -3.8250 5.9406 38 1 2.4157 -2.7376 -0.9717 39 1 0.6904 -2.3001 -0.9847 40 1 1.6237 -2.2852 -2.5002 41 1 3.8575 -1.6377 -3.0346 42 1 5.2407 0.0281 -4.1133 43 1 3.8976 1.2599 -4.1103 44 1 1.2630 -0.4355 -4.2160 45 1 1.8287 -2.1675 -4.2502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496066764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:34 Heat of formation + Delta-G solvation = -136.010418 kcal Electronic energy + Delta-G solvation = -29008.531636 eV Core-core repulsion = 24767.564764 eV Total energy + Delta-G solvation = -4240.966872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40869 -40.16633 -38.31115 -38.17171 -37.11799 -36.36765 -36.14420 -35.44124 -33.30220 -32.54858 -28.99560 -28.53076 -27.81159 -26.71576 -25.47078 -24.46404 -21.82205 -21.08947 -20.03703 -19.90046 -19.73978 -18.77888 -17.97099 -17.77867 -17.54965 -17.24391 -17.07758 -16.50003 -16.32197 -16.16538 -15.96921 -15.39243 -15.31449 -14.84749 -14.78599 -14.37997 -14.37829 -14.12698 -13.88179 -13.55686 -13.31325 -13.29177 -13.24571 -13.20426 -13.13110 -12.97166 -12.88224 -12.82854 -12.78062 -12.49508 -12.41364 -12.13504 -11.86073 -11.63529 -11.54175 -11.45452 -10.71298 -10.40161 -10.04194 -9.69448 -9.30359 -8.49544 -5.98206 -1.00504 1.23654 1.34504 1.40259 1.53298 1.54261 1.90671 2.02011 2.27113 2.47132 2.87341 2.91439 2.97077 3.07106 3.17769 3.46617 3.61051 3.92482 4.01419 4.13729 4.20062 4.24555 4.31386 4.34045 4.45373 4.48951 4.54287 4.67677 4.68591 4.70172 4.70565 4.81953 4.86180 4.96365 5.12385 5.30972 5.38655 5.58941 5.86912 6.08918 6.31478 6.38649 6.57540 7.10257 7.12572 7.53227 8.09013 8.68046 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.002608 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.584401 B =10732.475339 C =12480.104809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.075 0.925 4 C 0.052 3.948 5 N -0.687 5.687 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.268 1.268 18 N -0.602 5.602 19 C 0.049 3.951 20 C 0.531 3.469 21 O -0.570 6.570 22 C -0.176 4.176 23 C -0.545 4.545 24 S 2.404 3.596 25 O -0.971 6.971 26 O -0.951 6.951 27 C -0.524 4.524 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.340 0.660 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.642 -0.609 -14.046 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.078 4.078 5 N -0.320 5.320 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.193 1.193 18 N -0.335 5.335 19 C -0.093 4.093 20 C 0.318 3.682 21 O -0.448 6.448 22 C -0.200 4.200 23 C -0.675 4.675 24 S 2.591 3.409 25 O -0.968 6.968 26 O -0.948 6.948 27 C -0.655 4.655 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.188 0.812 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.760 0.629 -15.280 24.987 hybrid contribution 0.850 -0.839 1.679 2.060 sum -18.910 -0.211 -13.601 23.294 Atomic orbital electron populations 1.22029 0.91507 1.03819 1.03288 1.21180 0.95586 0.97065 0.82999 0.90712 1.22449 0.86107 1.00452 0.98744 1.59965 1.10661 1.57439 1.03900 1.21538 0.90225 0.98972 0.95870 1.20941 0.90743 0.82178 0.83854 1.90502 1.72873 1.52750 1.35094 1.41927 1.06855 1.51547 1.20578 1.19670 0.83074 1.36878 1.06698 0.90599 1.26017 1.04851 0.95774 0.94474 1.69671 1.38213 1.38463 1.09652 0.84892 0.76934 0.78408 0.78236 1.19989 1.19618 1.19329 1.47862 1.50098 1.13608 1.21913 1.22394 1.02565 0.79302 1.05000 1.20149 0.77599 0.86285 0.84152 1.90710 1.58267 1.18970 1.76871 1.23694 0.97102 1.01894 0.97347 1.30883 1.10795 1.10349 1.15429 1.09526 0.79287 0.75772 0.76364 1.93543 1.77639 1.64777 1.60820 1.93641 1.69885 1.49416 1.81840 1.31140 1.08525 1.15167 1.10673 0.90070 0.90215 0.91986 0.89141 0.92628 0.84125 0.87870 0.91179 0.76904 0.91232 0.92979 0.88146 0.87492 0.82912 0.82971 0.83210 0.81151 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.17 71.98 0.66 -0.98 16 2 C 0.14 2.58 2.95 44.99 0.13 2.72 16 3 H 0.07 2.01 6.90 -2.39 -0.02 2.00 16 4 C 0.05 1.06 5.03 86.30 0.43 1.49 16 5 N -0.69 -21.57 6.11 -517.93 -3.17 -24.74 16 6 C 0.07 2.22 6.17 85.56 0.53 2.75 16 7 C 0.44 20.84 7.82 87.66 0.69 21.53 16 8 O -0.63 -35.47 15.78 -3.06 -0.05 -35.52 16 9 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 10 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 13 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 14 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 N -0.60 -10.58 1.83 -822.60 -1.51 -12.08 16 19 C 0.05 0.45 9.29 127.77 1.19 1.64 16 20 C 0.53 12.10 7.11 87.66 0.62 12.72 16 21 O -0.57 -18.68 15.04 -3.02 -0.05 -18.72 16 22 C -0.18 -2.60 2.33 -9.34 -0.02 -2.62 16 23 C -0.55 -8.88 8.20 72.98 0.60 -8.28 16 24 S 2.40 31.86 6.80 -56.49 -0.38 31.48 16 25 O -0.97 -20.33 18.18 -127.71 -2.32 -22.66 16 26 O -0.95 -18.81 18.18 -127.71 -2.32 -21.14 16 27 C -0.52 -3.11 6.98 73.19 0.51 -2.60 16 28 H 0.08 0.56 6.66 -2.39 -0.02 0.54 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.09 1.72 8.14 -2.38 -0.02 1.71 16 32 H 0.06 0.87 7.84 -2.39 -0.02 0.85 16 33 H 0.34 11.33 7.55 -89.70 -0.68 10.65 16 34 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 37 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.05 0.59 8.13 -2.39 -0.02 0.57 16 39 H 0.10 0.48 6.43 -2.39 -0.02 0.46 16 40 H 0.11 0.36 4.28 -2.39 -0.01 0.35 16 41 H 0.15 1.84 8.05 -2.39 -0.02 1.82 16 42 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.15 2.78 7.40 -2.38 -0.02 2.76 16 44 H 0.17 0.59 8.10 -2.39 -0.02 0.57 16 45 H 0.20 -0.37 6.94 -2.39 -0.02 -0.38 16 Total: -1.00 -90.88 381.86 -2.86 -93.74 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.37 Total: 34.56 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.62 Total: 9.98 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.02 Total: -116.81 kcal Atomic # 8 Polarization: -93.30 SS G_CDS: -4.74 Total: -98.04 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 31.86 SS G_CDS: -0.38 Total: 31.48 kcal Total: -90.88 -2.86 -93.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496066764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.270 kcal (2) G-P(sol) polarization free energy of solvation -90.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds