Wall clock time and date at job start Wed Apr 1 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47527 * 2 1 4 4 N 1.46504 * 109.47678 * 239.99924 * 2 1 3 5 5 C 1.36936 * 119.99750 * 84.99640 * 4 2 1 6 6 H 1.07999 * 120.00477 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99928 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00088 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99580 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47212 * 90.00321 * 9 7 5 11 11 H 1.48503 * 109.46809 * 210.00174 * 9 7 5 12 12 H 1.48499 * 109.47532 * 329.99874 * 9 7 5 13 13 C 1.53003 * 109.47200 * 119.99914 * 2 1 3 14 14 H 1.09000 * 110.88651 * 57.57257 * 13 2 1 15 15 C 1.55156 * 111.00402 * 293.65250 * 13 2 1 16 16 C 1.54314 * 102.86499 * 206.22503 * 15 13 2 17 17 N 1.47025 * 107.27162 * 22.52602 * 16 15 13 18 18 C 1.34777 * 125.64317 * 180.96786 * 17 16 15 19 19 O 1.21689 * 119.99945 * 179.69580 * 18 17 16 20 20 C 1.46722 * 120.00238 * 359.68860 * 18 17 16 21 21 O 1.35342 * 126.64369 * 359.69002 * 20 18 17 22 22 C 1.33665 * 107.68700 * 180.25971 * 21 20 18 23 23 N 1.30619 * 109.14964 * 0.02562 * 22 21 20 24 24 C 1.33687 * 109.00057 * 359.97438 * 23 22 21 25 25 C 1.50698 * 126.27774 * 180.02562 * 24 23 22 26 26 F 1.39906 * 109.46678 * 269.97578 * 25 24 23 27 27 F 1.39905 * 109.47098 * 29.97159 * 25 24 23 28 28 F 1.39896 * 109.47247 * 149.97648 * 25 24 23 29 29 C 1.47418 * 108.70375 * 0.70539 * 17 16 15 30 30 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47447 * 300.00397 * 1 2 3 32 32 H 1.09002 * 109.46625 * 59.99912 * 1 2 3 33 33 H 0.97001 * 119.99734 * 265.00632 * 4 2 1 34 34 H 0.97000 * 119.99699 * 179.97438 * 8 7 5 35 35 H 1.09002 * 110.71816 * 324.78423 * 15 13 2 36 36 H 1.09001 * 110.72397 * 87.87687 * 15 13 2 37 37 H 1.08994 * 109.98978 * 263.04384 * 16 15 13 38 38 H 1.09001 * 109.77183 * 141.88067 * 16 15 13 39 39 H 1.07995 * 125.42309 * 180.02562 * 22 21 20 40 40 H 1.08998 * 110.37025 * 94.94048 * 29 17 16 41 41 H 1.09007 * 110.36506 * 217.15131 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6115 -0.6620 -3.5093 8 7 2.7377 -0.0053 -4.6428 9 14 3.0546 -2.4747 -3.4256 10 1 1.8569 -3.2923 -3.7452 11 1 4.1299 -2.7672 -4.4071 12 1 3.5294 -2.8057 -2.0580 13 6 2.0400 -0.7212 1.2493 14 1 1.6547 -1.7399 1.2944 15 6 1.6775 0.0688 2.5345 16 6 2.7743 -0.3691 3.5278 17 7 3.9163 -0.8465 2.7344 18 6 5.0700 -1.3335 3.2328 19 8 5.9491 -1.7066 2.4785 20 6 5.2661 -1.4137 4.6846 21 8 4.3868 -1.0337 5.6407 22 6 4.9528 -1.2671 6.8289 23 7 6.1425 -1.7739 6.6446 24 6 6.3719 -1.8798 5.3319 25 6 7.6232 -2.4163 4.6858 26 9 8.5266 -1.3685 4.4777 27 9 8.2056 -3.3749 5.5220 28 9 7.2992 -3.0035 3.4581 29 6 3.5880 -0.7102 1.3037 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.0611 -0.4626 -5.4348 35 1 1.7230 1.1426 2.3528 36 1 0.6907 -0.2178 2.8980 37 1 2.4023 -1.1728 4.1631 38 1 3.0775 0.4802 4.1401 39 1 4.4987 -1.0684 7.7884 40 1 3.9747 0.2313 0.9138 41 1 3.9951 -1.5494 0.7395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501061485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:38 Heat of formation + Delta-G solvation = -129.760238 kcal Electronic energy + Delta-G solvation = -31408.495825 eV Core-core repulsion = 26490.499289 eV Total energy + Delta-G solvation = -4917.996536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.25187 -47.80972 -47.68173 -44.24528 -40.24320 -38.15969 -36.01810 -35.40773 -32.68843 -31.80507 -30.88378 -29.11854 -28.73155 -27.06754 -24.89844 -23.86932 -23.35931 -22.42497 -21.50538 -20.53093 -19.97784 -18.97744 -18.74059 -18.40601 -17.99241 -17.56979 -17.36928 -16.51967 -16.30500 -15.79744 -15.06727 -14.99173 -14.62479 -14.49795 -14.32757 -14.18120 -14.10202 -13.93119 -13.83554 -13.67855 -13.27468 -13.00149 -12.74582 -12.66772 -12.46558 -12.36043 -12.30106 -11.92082 -11.79227 -11.56991 -11.10074 -10.93572 -10.75269 -10.68256 -10.52596 -10.28826 -10.02120 -9.96591 -9.60756 -8.98222 -8.89617 -7.32268 -5.79337 -3.15841 -0.00521 1.56353 1.59608 2.20210 2.56166 2.58591 3.17438 3.37828 3.40715 3.46831 3.48997 3.79485 4.14831 4.25586 4.41391 4.45281 4.57474 4.59360 4.70774 4.76381 5.05876 5.17476 5.29392 5.35177 5.48834 5.54522 5.66016 5.69605 5.83367 5.94728 5.96434 6.04771 6.18153 6.28964 6.37164 6.63752 6.68878 6.90718 7.08374 7.59849 7.95114 8.39274 9.16981 9.89680 10.08043 11.38816 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003145 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.393190 B = 8901.164059 C =10423.078322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C -0.107 4.107 14 H 0.083 0.917 15 C -0.122 4.122 16 C 0.097 3.903 17 N -0.600 5.600 18 C 0.600 3.400 19 O -0.484 6.484 20 C -0.014 4.014 21 O -0.172 6.172 22 C 0.210 3.790 23 N -0.458 5.458 24 C -0.035 4.035 25 C 0.551 3.449 26 F -0.166 7.166 27 F -0.167 7.167 28 F -0.138 7.138 29 C 0.117 3.883 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -1.615 27.364 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.392 5.392 5 C -0.375 4.375 6 H 0.108 0.892 7 C -0.188 4.188 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.127 4.127 14 H 0.101 0.899 15 C -0.160 4.160 16 C -0.026 4.026 17 N -0.333 5.333 18 C 0.384 3.616 19 O -0.360 6.360 20 C -0.072 4.072 21 O -0.057 6.057 22 C -0.017 4.017 23 N -0.184 5.184 24 C -0.160 4.160 25 C 0.496 3.504 26 F -0.147 7.147 27 F -0.148 7.148 28 F -0.119 7.119 29 C -0.003 4.003 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.284 0.716 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.723 -1.815 27.236 27.351 hybrid contribution -0.051 -1.184 -0.313 1.226 sum 1.673 -2.999 26.924 27.142 Atomic orbital electron populations 1.22407 0.98421 1.00984 1.00633 1.20130 0.92211 0.95454 0.84169 0.92285 1.42795 1.79760 1.09508 1.07136 1.19020 1.37388 0.95566 0.85500 0.89167 1.24654 1.01209 0.97420 0.95557 1.69690 1.52400 1.35609 1.00295 0.86600 0.78112 0.86852 0.77245 1.21159 1.21698 1.20228 1.22762 0.93616 1.00614 0.95697 0.89886 1.22679 0.97649 1.01379 0.94298 1.22223 0.86445 0.99301 0.94592 1.48457 1.14389 1.60543 1.09890 1.15945 0.82882 0.79935 0.82820 1.91077 1.41209 1.47817 1.55854 1.23217 0.89613 1.03552 0.90859 1.84690 1.41866 1.63077 1.16054 1.28519 0.88101 0.95336 0.89696 1.70179 1.16353 1.17007 1.14885 1.21705 0.96400 1.06970 0.90942 1.16730 0.80821 0.75985 0.76862 1.93249 1.68881 1.57665 1.94938 1.93231 1.85400 1.64542 1.71668 1.93419 1.92107 1.83967 1.42405 1.22472 0.95616 1.03940 0.78320 0.93568 0.94035 0.92156 0.80643 0.93012 0.89788 0.89574 0.91035 0.90956 0.71569 0.89711 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.34 37.16 0.35 -2.13 16 2 C 0.19 3.15 2.40 -67.93 -0.16 2.99 16 3 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 4 N -0.75 -16.36 4.62 -53.42 -0.25 -16.61 16 5 C -0.25 -6.58 10.41 -15.06 -0.16 -6.74 16 6 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 7 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 9 Si 0.88 21.96 27.74 -169.99 -4.71 17.25 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 13 C -0.11 -1.39 2.62 -88.47 -0.23 -1.63 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.11 5.59 -24.90 -0.14 -1.25 16 16 C 0.10 0.87 5.56 -3.07 -0.02 0.85 16 17 N -0.60 -7.63 3.33 -172.05 -0.57 -8.21 16 18 C 0.60 8.51 7.77 -12.83 -0.10 8.41 16 19 O -0.48 -8.50 13.40 5.20 0.07 -8.43 16 20 C -0.01 -0.16 6.94 -36.84 -0.26 -0.41 16 21 O -0.17 -1.35 8.51 4.43 0.04 -1.31 16 22 C 0.21 1.20 13.21 52.25 0.69 1.89 16 23 N -0.46 -4.58 11.21 -10.89 -0.12 -4.70 16 24 C -0.04 -0.43 6.49 -82.47 -0.54 -0.96 16 25 C 0.55 7.44 3.33 36.00 0.12 7.56 16 26 F -0.17 -2.30 17.30 2.25 0.04 -2.26 16 27 F -0.17 -2.16 17.27 2.25 0.04 -2.12 16 28 F -0.14 -2.12 13.48 2.25 0.03 -2.09 16 29 C 0.12 1.73 6.09 -2.53 -0.02 1.72 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.36 7.91 5.66 -40.82 -0.23 7.68 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 36 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 37 H 0.07 0.55 7.72 -51.93 -0.40 0.15 16 38 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 39 H 0.27 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 41 H 0.09 1.50 8.03 -51.92 -0.42 1.08 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -34.24 354.60 -4.67 -38.91 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.80 Total: 1.93 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.55 Total: 10.41 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.17 Total: -57.62 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.11 Total: -9.75 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.24 -4.67 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501061485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.850 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds