Wall clock time and date at job start Wed Apr 1 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47227 * 89.99498 * 9 7 5 11 11 H 1.48496 * 109.47434 * 209.99930 * 9 7 5 12 12 H 1.48507 * 109.46769 * 330.00032 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09003 * 110.88555 * 179.29709 * 13 2 1 15 15 C 1.55160 * 111.00374 * 303.17602 * 13 2 1 16 16 C 1.54365 * 102.91732 * 153.54491 * 15 13 2 17 17 N 1.47019 * 107.29483 * 337.86631 * 16 15 13 18 18 C 1.34777 * 125.65214 * 178.94531 * 17 16 15 19 19 O 1.21681 * 119.99848 * 179.97438 * 18 17 16 20 20 C 1.46721 * 119.99901 * 359.95395 * 18 17 16 21 21 O 1.35340 * 126.64279 * 359.68762 * 20 18 17 22 22 C 1.33667 * 107.68382 * 179.87594 * 21 20 18 23 23 N 1.30614 * 109.15205 * 0.39846 * 22 21 20 24 24 C 1.33695 * 108.99920 * 359.75429 * 23 22 21 25 25 C 1.50699 * 126.27604 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.46929 * 269.97177 * 25 24 23 27 27 F 1.39897 * 109.47111 * 29.97239 * 25 24 23 28 28 F 1.39903 * 109.47165 * 149.97257 * 25 24 23 29 29 C 1.47427 * 108.69817 * 358.90490 * 17 16 15 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 0.97000 * 120.00679 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.71988 * 271.94244 * 15 13 2 36 36 H 1.09006 * 110.71781 * 35.21855 * 15 13 2 37 37 H 1.09005 * 109.90277 * 218.42504 * 16 15 13 38 38 H 1.09002 * 109.97324 * 97.34542 * 16 15 13 39 39 H 1.08003 * 125.42416 * 180.15438 * 22 21 20 40 40 H 1.09005 * 110.36679 * 265.28986 * 29 17 16 41 41 H 1.09002 * 110.46081 * 143.01961 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.9242 -1.9389 -3.4504 9 14 2.7777 0.2670 -5.1215 10 1 4.1379 0.8564 -5.2102 11 1 2.5678 -0.6665 -6.2571 12 1 1.7640 1.3508 -5.1777 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0657 2.5383 16 6 1.4924 -1.2299 3.5519 17 7 1.4919 -2.4813 2.7803 18 6 1.5225 -3.7245 3.2998 19 8 1.5182 -4.6923 2.5623 20 6 1.5616 -3.9109 4.7547 21 8 1.5771 -2.9364 5.6937 22 6 1.6104 -3.5278 6.8920 23 7 1.6245 -4.8237 6.7300 24 6 1.5953 -5.0993 5.4221 25 6 1.5983 -6.4718 4.7998 26 9 2.9177 -6.8782 4.5733 27 9 0.9732 -7.3770 5.6640 28 9 0.9068 -6.4341 3.5842 29 6 1.4512 -2.1509 1.3441 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2468 -2.3964 -4.2426 35 1 2.1253 0.7453 2.8722 36 1 0.4612 0.2923 2.3771 37 1 0.6050 -1.1832 4.1832 38 1 2.3893 -1.1753 4.1690 39 1 1.6273 -3.0155 7.8426 40 1 0.4235 -2.1629 0.9810 41 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501061487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:42 Heat of formation + Delta-G solvation = -127.999424 kcal Electronic energy + Delta-G solvation = -31356.676714 eV Core-core repulsion = 26438.756533 eV Total energy + Delta-G solvation = -4917.920181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.20483 -47.76438 -47.63192 -44.19540 -40.21767 -38.15783 -35.95045 -35.21375 -32.71107 -31.72319 -30.66319 -28.92478 -28.05597 -26.95680 -25.04654 -24.14369 -23.45903 -22.44020 -21.86698 -20.61800 -19.00471 -18.89835 -18.68514 -18.35373 -17.81197 -17.51764 -17.10687 -16.46614 -16.32562 -15.74523 -15.03194 -14.85379 -14.66145 -14.48561 -14.34783 -14.09732 -13.98498 -13.79584 -13.76516 -13.64884 -13.38055 -13.04757 -12.97834 -12.66796 -12.33200 -12.27151 -12.15270 -11.76545 -11.50734 -11.18048 -11.05011 -10.88409 -10.65255 -10.48526 -10.40379 -10.28152 -9.94263 -9.91459 -9.66415 -8.95918 -8.76991 -7.01089 -5.78550 -3.08681 0.04873 1.60995 1.64941 2.25301 2.62367 2.65449 3.21998 3.41951 3.46972 3.49234 3.53893 3.85424 4.19664 4.31374 4.48053 4.51301 4.54412 4.71950 4.79233 4.87169 5.17997 5.24788 5.36136 5.50598 5.54943 5.65951 5.68584 5.82199 5.93793 6.00327 6.06925 6.12456 6.31369 6.45445 6.60017 6.68533 6.75344 7.03086 7.15802 7.66628 7.67439 8.39050 9.50421 10.06267 10.40366 11.43666 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002686 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.209788 B =10422.069542 C =11605.928159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.185 3.815 3 H 0.054 0.946 4 N -0.725 5.725 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.087 0.913 15 C -0.130 4.130 16 C 0.098 3.902 17 N -0.597 5.597 18 C 0.599 3.401 19 O -0.484 6.484 20 C -0.013 4.013 21 O -0.172 6.172 22 C 0.209 3.791 23 N -0.458 5.458 24 C -0.036 4.036 25 C 0.552 3.448 26 F -0.166 7.166 27 F -0.168 7.168 28 F -0.138 7.138 29 C 0.108 3.892 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -0.360 24.528 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.075 3.925 3 H 0.072 0.928 4 N -0.367 5.367 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.105 0.895 15 C -0.168 4.168 16 C -0.025 4.025 17 N -0.330 5.330 18 C 0.383 3.617 19 O -0.359 6.359 20 C -0.071 4.071 21 O -0.057 6.057 22 C -0.018 4.018 23 N -0.184 5.184 24 C -0.161 4.161 25 C 0.496 3.504 26 F -0.147 7.147 27 F -0.149 7.149 28 F -0.119 7.119 29 C -0.013 4.013 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.284 0.716 40 H 0.104 0.896 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.041 -1.249 24.460 24.823 hybrid contribution 0.185 0.513 -1.130 1.255 sum -3.856 -0.736 23.329 23.657 Atomic orbital electron populations 1.22639 0.99431 1.01055 1.00151 1.20074 0.91855 0.95389 0.85228 0.92819 1.42446 1.78212 1.10809 1.05186 1.19200 1.36926 0.93964 0.87215 0.91154 1.24750 1.02009 0.95954 0.98074 1.69656 1.50469 1.08694 1.28979 0.86216 0.77739 0.78585 0.83766 1.21746 1.21788 1.20794 1.22736 1.00866 0.93352 0.95260 0.89482 1.22844 1.03218 0.96376 0.94340 1.22215 1.01887 0.83539 0.94846 1.48442 1.70340 1.04432 1.09804 1.15948 0.79537 0.83490 0.82701 1.91075 1.49613 1.38206 1.57025 1.23245 1.06577 0.86130 0.91179 1.84693 1.67777 1.36918 1.16294 1.28507 0.96950 0.87031 0.89265 1.70176 1.17297 1.15408 1.15553 1.21706 1.09277 0.94287 0.90862 1.16728 0.74897 0.82055 0.76712 1.93251 1.35625 1.91195 1.94652 1.93226 1.82479 1.69159 1.70020 1.93422 1.78890 1.96148 1.43396 1.22670 1.02983 0.97239 0.78374 0.94099 0.92580 0.93097 0.78169 0.93412 0.89742 0.89437 0.91125 0.91095 0.71608 0.89589 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 8.84 37.16 0.33 -2.43 16 2 C 0.18 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -17.06 5.07 -53.42 -0.27 -17.33 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 9 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.10 -1.45 3.07 -88.47 -0.27 -1.72 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -1.29 6.31 -24.87 -0.16 -1.45 16 16 C 0.10 0.94 5.56 -3.04 -0.02 0.92 16 17 N -0.60 -7.90 3.33 -172.02 -0.57 -8.48 16 18 C 0.60 8.74 7.77 -12.83 -0.10 8.64 16 19 O -0.48 -8.64 13.39 5.21 0.07 -8.57 16 20 C -0.01 -0.15 6.94 -36.84 -0.26 -0.41 16 21 O -0.17 -1.42 8.50 4.43 0.04 -1.39 16 22 C 0.21 1.27 13.21 52.24 0.69 1.96 16 23 N -0.46 -4.72 11.21 -10.88 -0.12 -4.85 16 24 C -0.04 -0.45 6.49 -82.46 -0.54 -0.99 16 25 C 0.55 7.59 3.34 36.00 0.12 7.71 16 26 F -0.17 -2.36 17.30 2.25 0.04 -2.32 16 27 F -0.17 -2.20 17.27 2.25 0.04 -2.16 16 28 F -0.14 -2.14 13.47 2.25 0.03 -2.11 16 29 C 0.11 1.64 5.68 -2.53 -0.01 1.63 16 30 H 0.04 0.52 6.07 -51.93 -0.32 0.20 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.84 6.04 -51.93 -0.31 0.52 16 33 H 0.38 9.73 7.06 -40.82 -0.29 9.44 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.83 5.75 -51.93 -0.30 0.53 16 37 H 0.07 0.57 7.82 -51.93 -0.41 0.17 16 38 H 0.07 0.60 7.69 -51.93 -0.40 0.20 16 39 H 0.27 -0.04 8.06 -52.48 -0.42 -0.46 16 40 H 0.09 1.35 5.66 -51.93 -0.29 1.05 16 41 H 0.09 1.59 7.79 -51.93 -0.40 1.19 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -33.29 349.55 -4.81 -38.10 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.38 Total: 3.97 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.65 Total: 9.89 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.24 Total: -57.66 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.11 Total: -9.96 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.29 -4.81 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501061487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.902 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds