Wall clock time and date at job start Wed Apr 1 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47227 * 89.99498 * 9 7 5 11 11 H 1.48496 * 109.47434 * 209.99930 * 9 7 5 12 12 H 1.48507 * 109.46769 * 330.00032 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09003 * 110.88555 * 179.29709 * 13 2 1 15 15 C 1.55160 * 111.00374 * 303.17602 * 13 2 1 16 16 C 1.54365 * 102.91732 * 153.54491 * 15 13 2 17 17 N 1.47019 * 107.29483 * 337.86631 * 16 15 13 18 18 C 1.34777 * 125.65214 * 178.94531 * 17 16 15 19 19 O 1.21681 * 119.99848 * 179.97438 * 18 17 16 20 20 C 1.46721 * 119.99901 * 359.95395 * 18 17 16 21 21 O 1.35340 * 126.64279 * 359.68762 * 20 18 17 22 22 C 1.33667 * 107.68382 * 179.87594 * 21 20 18 23 23 N 1.30614 * 109.15205 * 0.39846 * 22 21 20 24 24 C 1.33695 * 108.99920 * 359.75429 * 23 22 21 25 25 C 1.50699 * 126.27604 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.46929 * 269.97177 * 25 24 23 27 27 F 1.39897 * 109.47111 * 29.97239 * 25 24 23 28 28 F 1.39903 * 109.47165 * 149.97257 * 25 24 23 29 29 C 1.47427 * 108.69817 * 358.90490 * 17 16 15 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 0.97000 * 120.00679 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.71988 * 271.94244 * 15 13 2 36 36 H 1.09006 * 110.71781 * 35.21855 * 15 13 2 37 37 H 1.09005 * 109.90277 * 218.42504 * 16 15 13 38 38 H 1.09002 * 109.97324 * 97.34542 * 16 15 13 39 39 H 1.08003 * 125.42416 * 180.15438 * 22 21 20 40 40 H 1.09005 * 110.36679 * 265.28986 * 29 17 16 41 41 H 1.09002 * 110.46081 * 143.01961 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.9242 -1.9389 -3.4504 9 14 2.7777 0.2670 -5.1215 10 1 4.1379 0.8564 -5.2102 11 1 2.5678 -0.6665 -6.2571 12 1 1.7640 1.3508 -5.1777 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0657 2.5383 16 6 1.4924 -1.2299 3.5519 17 7 1.4919 -2.4813 2.7803 18 6 1.5225 -3.7245 3.2998 19 8 1.5182 -4.6923 2.5623 20 6 1.5616 -3.9109 4.7547 21 8 1.5771 -2.9364 5.6937 22 6 1.6104 -3.5278 6.8920 23 7 1.6245 -4.8237 6.7300 24 6 1.5953 -5.0993 5.4221 25 6 1.5983 -6.4718 4.7998 26 9 2.9177 -6.8782 4.5733 27 9 0.9732 -7.3770 5.6640 28 9 0.9068 -6.4341 3.5842 29 6 1.4512 -2.1509 1.3441 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2468 -2.3964 -4.2426 35 1 2.1253 0.7453 2.8722 36 1 0.4612 0.2923 2.3771 37 1 0.6050 -1.1832 4.1832 38 1 2.3893 -1.1753 4.1690 39 1 1.6273 -3.0155 7.8426 40 1 0.4235 -2.1629 0.9810 41 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501061487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:41 Heat of formation + Delta-G solvation = -153.562883 kcal Electronic energy + Delta-G solvation = -31357.785229 eV Core-core repulsion = 26438.756533 eV Total energy + Delta-G solvation = -4919.028696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.29379 -48.84538 -48.75418 -44.91472 -41.29992 -39.34211 -36.97065 -36.44094 -34.37805 -32.73496 -31.94489 -30.25939 -29.37199 -27.98940 -26.27196 -25.64288 -24.41555 -23.34431 -23.08314 -21.56785 -20.28164 -19.86735 -19.74683 -19.43503 -19.25062 -18.57516 -18.22998 -17.51951 -17.20895 -16.78752 -16.52273 -15.99121 -15.79093 -15.63580 -15.44732 -15.31524 -15.20998 -15.10751 -14.92894 -14.86495 -14.78189 -14.35584 -14.08479 -13.71702 -13.54748 -13.50591 -13.10786 -13.03508 -12.76021 -12.70456 -12.27486 -12.24487 -12.15774 -12.12670 -11.64968 -11.60142 -11.41301 -11.37642 -10.89560 -10.74037 -9.83307 -8.98586 -7.90980 -5.19349 -0.79722 0.80673 0.97626 1.31376 1.48280 1.49550 1.57823 1.58008 1.74705 2.31176 2.58028 2.62677 3.07425 3.12939 3.42735 3.48877 3.52116 3.57912 3.70139 3.91262 4.00990 4.14605 4.26758 4.36982 4.46375 4.58330 4.65804 4.76430 4.83221 4.90102 4.93646 5.01655 5.09881 5.21476 5.32171 5.41269 5.56637 5.69962 5.97548 6.16742 6.31027 6.60914 7.36856 8.15042 8.35106 9.32543 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002686 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.209788 B =10422.069542 C =11605.928159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.741 5.741 5 C -0.232 4.232 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.288 1.288 11 H -0.302 1.302 12 H -0.267 1.267 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.115 4.115 16 C 0.095 3.905 17 N -0.596 5.596 18 C 0.593 3.407 19 O -0.533 6.533 20 C -0.025 4.025 21 O -0.160 6.160 22 C 0.255 3.745 23 N -0.494 5.494 24 C -0.041 4.041 25 C 0.544 3.456 26 F -0.174 7.174 27 F -0.166 7.166 28 F -0.153 7.153 29 C 0.113 3.887 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.332 0.668 40 H 0.079 0.921 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 2.772 28.022 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.077 0.923 4 N -0.381 5.381 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.192 1.192 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.026 4.026 17 N -0.327 5.327 18 C 0.379 3.621 19 O -0.412 6.412 20 C -0.085 4.085 21 O -0.045 6.045 22 C 0.031 3.969 23 N -0.220 5.220 24 C -0.165 4.165 25 C 0.489 3.511 26 F -0.155 7.155 27 F -0.147 7.147 28 F -0.134 7.134 29 C -0.009 4.009 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.346 0.654 40 H 0.097 0.903 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.795 1.955 28.021 28.495 hybrid contribution 0.386 -0.409 -2.016 2.092 sum -4.410 1.547 26.005 26.421 Atomic orbital electron populations 1.22488 0.97679 1.00775 1.01291 1.20352 0.92878 0.95321 0.84415 0.92311 1.42733 1.78506 1.10411 1.06451 1.19639 1.34236 0.94329 0.88180 0.90203 1.25542 1.03380 0.96793 1.01510 1.69832 1.52896 1.10424 1.29245 0.85195 0.77876 0.77415 0.79628 1.21568 1.22888 1.19184 1.22523 1.00082 0.92782 0.96115 0.90770 1.22858 1.04135 0.96917 0.91339 1.22514 1.04170 0.81223 0.94713 1.48481 1.69617 1.05468 1.09182 1.16255 0.78811 0.83190 0.83822 1.91044 1.51749 1.39725 1.58692 1.22450 1.08950 0.86684 0.90381 1.84702 1.67767 1.35669 1.16364 1.29991 0.91180 0.85869 0.89890 1.70215 1.19820 1.17815 1.14113 1.21510 1.09555 0.93328 0.92099 1.16979 0.74436 0.83263 0.76410 1.93224 1.36129 1.91439 1.94729 1.93218 1.82406 1.69348 1.69766 1.93389 1.79183 1.96301 1.44533 1.22410 1.01745 0.97119 0.79653 0.89672 0.94658 0.94125 0.79815 0.94327 0.86912 0.88180 0.88404 0.89164 0.65359 0.90259 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 8.84 71.98 0.64 -4.32 16 2 C 0.18 6.13 2.84 44.99 0.13 6.25 16 3 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 4 N -0.74 -35.67 5.07 -322.93 -1.64 -37.31 16 5 C -0.23 -12.47 9.93 84.03 0.83 -11.63 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 8 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 9 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C -0.09 -2.60 3.07 -9.40 -0.03 -2.63 16 14 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.11 -1.82 6.31 31.80 0.20 -1.62 16 16 C 0.09 1.46 5.56 86.74 0.48 1.94 16 17 N -0.60 -15.31 3.33 -816.36 -2.72 -18.02 16 18 C 0.59 17.50 7.77 86.46 0.67 18.17 16 19 O -0.53 -20.34 13.39 -4.29 -0.06 -20.40 16 20 C -0.03 -0.57 6.94 24.05 0.17 -0.40 16 21 O -0.16 -1.97 8.50 -7.07 -0.06 -2.03 16 22 C 0.26 1.80 13.21 130.42 1.72 3.52 16 23 N -0.49 -8.81 11.21 -303.12 -3.40 -12.21 16 24 C -0.04 -0.98 6.49 41.83 0.27 -0.71 16 25 C 0.54 15.48 3.34 71.24 0.24 15.72 16 26 F -0.17 -5.18 17.30 44.97 0.78 -4.40 16 27 F -0.17 -4.44 17.27 44.97 0.78 -3.66 16 28 F -0.15 -5.07 13.47 44.97 0.61 -4.47 16 29 C 0.11 3.52 5.68 86.85 0.49 4.01 16 30 H 0.08 1.83 6.07 -2.39 -0.01 1.81 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.04 1.32 6.04 -2.39 -0.01 1.30 16 33 H 0.37 19.75 7.06 -92.70 -0.65 19.09 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.37 5.75 -2.38 -0.01 1.36 16 37 H 0.10 1.06 7.82 -2.38 -0.02 1.04 16 38 H 0.09 1.10 7.69 -2.39 -0.02 1.09 16 39 H 0.33 -2.63 8.06 -2.91 -0.02 -2.65 16 40 H 0.08 2.56 5.66 -2.38 -0.01 2.55 16 41 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 Total: -1.00 -79.22 349.55 3.34 -75.87 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.46 Total: 14.49 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 6.28 Total: 24.17 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.47 Total: -127.68 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.12 Total: -22.42 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 2.16 Total: -12.53 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -79.22 3.34 -75.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501061487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.692 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds