Wall clock time and date at job start Wed Apr 1 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47729 * 2 1 4 4 N 1.46503 * 109.47100 * 120.00568 * 2 1 3 5 5 C 1.36931 * 119.99905 * 274.99312 * 4 2 1 6 6 H 1.08005 * 119.99962 * 0.28104 * 5 4 2 7 7 C 1.38811 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99636 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47397 * 59.99763 * 9 7 5 11 11 H 1.48501 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46709 * 299.99464 * 9 7 5 13 13 C 1.52998 * 109.46553 * 240.00267 * 2 1 3 14 14 H 1.09000 * 110.88944 * 300.10126 * 13 2 1 15 15 C 1.55156 * 111.00561 * 176.22624 * 13 2 1 16 16 C 1.54374 * 102.92262 * 206.45417 * 15 13 2 17 17 N 1.47019 * 107.28505 * 22.13479 * 16 15 13 18 18 C 1.34783 * 125.64367 * 181.05675 * 17 16 15 19 19 O 1.21679 * 119.99857 * 180.02562 * 18 17 16 20 20 C 1.46720 * 120.00047 * 0.04443 * 18 17 16 21 21 O 1.35343 * 126.64374 * 359.68468 * 20 18 17 22 22 C 1.33668 * 107.68290 * 179.84200 * 21 20 18 23 23 N 1.30614 * 109.15423 * 0.43167 * 22 21 20 24 24 C 1.33690 * 108.99425 * 359.73209 * 23 22 21 25 25 C 1.50705 * 126.27149 * 180.02562 * 24 23 22 26 26 F 1.39903 * 109.47318 * 269.95727 * 25 24 23 27 27 F 1.39902 * 109.47244 * 29.95987 * 25 24 23 28 28 F 1.39899 * 109.47087 * 149.95616 * 25 24 23 29 29 C 1.47421 * 108.70707 * 1.09413 * 17 16 15 30 30 H 1.09008 * 109.46362 * 294.91786 * 1 2 3 31 31 H 1.09001 * 109.47176 * 54.90827 * 1 2 3 32 32 H 1.08996 * 109.47277 * 174.91480 * 1 2 3 33 33 H 0.97004 * 119.99618 * 94.99664 * 4 2 1 34 34 H 0.97002 * 119.99541 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.71991 * 324.78604 * 15 13 2 36 36 H 1.08997 * 110.72613 * 88.05829 * 15 13 2 37 37 H 1.08998 * 109.84270 * 262.72728 * 16 15 13 38 38 H 1.09004 * 109.90069 * 141.57543 * 16 15 13 39 39 H 1.07998 * 125.42493 * 180.16169 * 22 21 20 40 40 H 1.09001 * 110.36709 * 217.03149 * 29 17 16 41 41 H 1.08997 * 110.46218 * 94.75593 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0077 2.3757 6 1 1.8882 1.0391 2.4253 7 6 2.6125 -0.6620 3.5089 8 7 2.9254 -1.9392 3.4497 9 14 2.7904 0.2696 5.1182 10 1 1.4677 0.8055 5.5288 11 1 3.3006 -0.6486 6.1679 12 1 3.7449 1.3926 4.9370 13 6 2.0399 -0.7212 -1.2493 14 1 1.6879 -1.7525 -1.2736 15 6 3.5879 -0.6600 -1.3340 16 6 3.8556 -0.7751 -2.8500 17 7 2.6287 -0.3559 -3.5432 18 6 2.4498 -0.3337 -4.8789 19 8 1.3874 0.0340 -5.3444 20 6 3.5360 -0.7534 -5.7716 21 8 4.7665 -1.1787 -5.4021 22 6 5.4482 -1.4658 -6.5155 23 7 4.6930 -1.2266 -7.5540 24 6 3.5032 -0.7847 -7.1343 25 6 2.3388 -0.3934 -8.0073 26 9 2.4246 0.9684 -8.3165 27 9 2.3690 -1.1426 -9.1884 28 9 1.1417 -0.6427 -7.3275 29 6 1.6269 0.0369 -2.5355 30 1 -0.3632 0.4330 0.9321 31 1 -0.3633 0.5908 -0.8409 32 1 -0.3633 -1.0236 -0.0911 33 1 2.2490 -1.6320 1.1524 34 1 3.2487 -2.3965 4.2417 35 1 3.9580 0.2900 -0.9484 36 1 4.0369 -1.4961 -0.7979 37 1 4.0921 -1.8077 -3.1066 38 1 4.6819 -0.1224 -3.1315 39 1 6.4633 -1.8327 -6.5509 40 1 0.6299 -0.2689 -2.8526 41 1 1.6573 1.1134 -2.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501061489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:45 Heat of formation + Delta-G solvation = -134.803946 kcal Electronic energy + Delta-G solvation = -31083.197379 eV Core-core repulsion = 26164.982132 eV Total energy + Delta-G solvation = -4918.215247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.28832 -47.84401 -47.71987 -44.22191 -40.22950 -38.08541 -35.96887 -35.28340 -32.65765 -31.77609 -30.65925 -29.40602 -27.82448 -26.99438 -25.11492 -24.10665 -23.16432 -22.40408 -21.57850 -20.55698 -19.76855 -18.96383 -18.76984 -18.43497 -17.84889 -17.50958 -17.11527 -16.52794 -16.37099 -15.78109 -15.01704 -14.97225 -14.65624 -14.45438 -14.26181 -14.18732 -14.02825 -13.87473 -13.76845 -13.58645 -13.29697 -13.00289 -12.81347 -12.58551 -12.55606 -12.33405 -12.23078 -11.84786 -11.56749 -11.30402 -10.94002 -10.80625 -10.68994 -10.60532 -10.46369 -10.30748 -9.96645 -9.95109 -9.70656 -8.97586 -8.91563 -7.03815 -5.83290 -3.12089 0.00421 1.58376 1.61986 2.19060 2.53588 2.58851 3.16362 3.39261 3.44580 3.44862 3.47593 3.81785 4.11928 4.27103 4.44360 4.51428 4.61201 4.70487 4.78646 4.97243 5.16343 5.21103 5.37797 5.46414 5.53995 5.74187 5.77007 5.83297 5.91974 5.97117 6.11883 6.26364 6.33877 6.46976 6.55840 6.65948 6.78875 7.02579 7.06885 7.56490 7.63834 8.35156 9.46752 10.02806 10.37747 11.39159 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.002335 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.844652 B =11990.716339 C =12725.361059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.084 0.916 15 C -0.114 4.114 16 C 0.093 3.907 17 N -0.597 5.597 18 C 0.602 3.398 19 O -0.492 6.492 20 C -0.015 4.015 21 O -0.170 6.170 22 C 0.212 3.788 23 N -0.459 5.459 24 C -0.036 4.036 25 C 0.552 3.448 26 F -0.167 7.167 27 F -0.167 7.167 28 F -0.139 7.139 29 C 0.114 3.886 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 0.768 -21.699 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.102 0.898 15 C -0.152 4.152 16 C -0.029 4.029 17 N -0.329 5.329 18 C 0.387 3.613 19 O -0.369 6.369 20 C -0.074 4.074 21 O -0.054 6.054 22 C -0.014 4.014 23 N -0.186 5.186 24 C -0.161 4.161 25 C 0.497 3.503 26 F -0.148 7.148 27 F -0.148 7.148 28 F -0.120 7.120 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.285 0.715 40 H 0.103 0.897 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.591 1.003 -22.448 22.935 hybrid contribution 0.199 0.120 1.419 1.437 sum 4.790 1.123 -21.030 21.598 Atomic orbital electron populations 1.22509 0.99123 1.00720 1.00576 1.20126 0.91891 0.95160 0.85295 0.93160 1.42351 1.78207 1.10644 1.05090 1.19161 1.36560 0.93916 0.87288 0.91252 1.24718 1.02152 0.95939 0.97991 1.69646 1.50840 1.08614 1.29032 0.86296 0.77799 0.78606 0.83639 1.21297 1.21739 1.21296 1.22717 0.95182 1.00423 0.93952 0.89804 1.22604 0.96405 1.04555 0.91644 1.22370 0.86124 1.00197 0.94203 1.48443 1.17175 1.63203 1.04050 1.15931 0.84674 0.80020 0.80711 1.91035 1.24020 1.47512 1.74300 1.23157 0.85743 1.04393 0.94098 1.84720 1.21803 1.61589 1.37309 1.28546 0.99674 0.96793 0.76348 1.70185 1.01035 1.15516 1.31813 1.21694 0.95742 1.07447 0.91223 1.16721 0.81019 0.75106 0.77471 1.93243 1.96270 1.32122 1.93183 1.93232 1.96581 1.76309 1.48698 1.93408 1.46075 1.93746 1.78740 1.22489 0.91921 0.99952 0.86385 0.92455 0.94321 0.93509 0.78279 0.93464 0.89908 0.89062 0.90989 0.91033 0.71528 0.89708 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.23 37.16 0.34 -2.46 16 2 C 0.19 3.24 2.40 -67.93 -0.16 3.08 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.33 4.88 -53.43 -0.26 -16.59 16 5 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 6 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 9 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 C -0.10 -1.44 2.63 -88.47 -0.23 -1.68 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -1.47 6.19 -24.87 -0.15 -1.62 16 16 C 0.09 0.99 5.56 -3.04 -0.02 0.98 16 17 N -0.60 -7.36 3.33 -172.02 -0.57 -7.93 16 18 C 0.60 8.02 7.77 -12.83 -0.10 7.93 16 19 O -0.49 -7.74 13.39 5.21 0.07 -7.67 16 20 C -0.02 -0.17 6.94 -36.84 -0.26 -0.43 16 21 O -0.17 -1.43 8.51 4.42 0.04 -1.40 16 22 C 0.21 1.31 13.21 52.24 0.69 2.00 16 23 N -0.46 -4.62 11.21 -10.88 -0.12 -4.74 16 24 C -0.04 -0.43 6.49 -82.47 -0.54 -0.96 16 25 C 0.55 7.01 3.34 36.01 0.12 7.13 16 26 F -0.17 -2.15 17.30 2.25 0.04 -2.11 16 27 F -0.17 -2.05 17.27 2.25 0.04 -2.01 16 28 F -0.14 -1.95 13.47 2.25 0.03 -1.92 16 29 C 0.11 1.45 5.52 -2.53 -0.01 1.44 16 30 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.04 0.54 7.60 -51.93 -0.39 0.14 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.38 9.27 7.80 -40.82 -0.32 8.96 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.13 8.04 -51.92 -0.42 0.71 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 38 H 0.07 0.67 7.81 -51.93 -0.41 0.27 16 39 H 0.27 0.05 8.06 -52.49 -0.42 -0.37 16 40 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 41 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.56 357.86 -5.06 -36.62 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.85 Total: 3.26 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.56 Total: 8.67 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.23 Total: -55.30 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.11 Total: -9.07 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.11 Total: -6.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.56 -5.06 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501061489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.184 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds