Wall clock time and date at job start Wed Apr 1 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47729 * 2 1 4 4 N 1.46503 * 109.47100 * 120.00568 * 2 1 3 5 5 C 1.36931 * 119.99905 * 274.99312 * 4 2 1 6 6 H 1.08005 * 119.99962 * 0.28104 * 5 4 2 7 7 C 1.38811 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99636 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47397 * 59.99763 * 9 7 5 11 11 H 1.48501 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46709 * 299.99464 * 9 7 5 13 13 C 1.52998 * 109.46553 * 240.00267 * 2 1 3 14 14 H 1.09000 * 110.88944 * 300.10126 * 13 2 1 15 15 C 1.55156 * 111.00561 * 176.22624 * 13 2 1 16 16 C 1.54374 * 102.92262 * 206.45417 * 15 13 2 17 17 N 1.47019 * 107.28505 * 22.13479 * 16 15 13 18 18 C 1.34783 * 125.64367 * 181.05675 * 17 16 15 19 19 O 1.21679 * 119.99857 * 180.02562 * 18 17 16 20 20 C 1.46720 * 120.00047 * 0.04443 * 18 17 16 21 21 O 1.35343 * 126.64374 * 359.68468 * 20 18 17 22 22 C 1.33668 * 107.68290 * 179.84200 * 21 20 18 23 23 N 1.30614 * 109.15423 * 0.43167 * 22 21 20 24 24 C 1.33690 * 108.99425 * 359.73209 * 23 22 21 25 25 C 1.50705 * 126.27149 * 180.02562 * 24 23 22 26 26 F 1.39903 * 109.47318 * 269.95727 * 25 24 23 27 27 F 1.39902 * 109.47244 * 29.95987 * 25 24 23 28 28 F 1.39899 * 109.47087 * 149.95616 * 25 24 23 29 29 C 1.47421 * 108.70707 * 1.09413 * 17 16 15 30 30 H 1.09008 * 109.46362 * 294.91786 * 1 2 3 31 31 H 1.09001 * 109.47176 * 54.90827 * 1 2 3 32 32 H 1.08996 * 109.47277 * 174.91480 * 1 2 3 33 33 H 0.97004 * 119.99618 * 94.99664 * 4 2 1 34 34 H 0.97002 * 119.99541 * 180.02562 * 8 7 5 35 35 H 1.09007 * 110.71991 * 324.78604 * 15 13 2 36 36 H 1.08997 * 110.72613 * 88.05829 * 15 13 2 37 37 H 1.08998 * 109.84270 * 262.72728 * 16 15 13 38 38 H 1.09004 * 109.90069 * 141.57543 * 16 15 13 39 39 H 1.07998 * 125.42493 * 180.16169 * 22 21 20 40 40 H 1.09001 * 110.36709 * 217.03149 * 29 17 16 41 41 H 1.08997 * 110.46218 * 94.75593 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0077 2.3757 6 1 1.8882 1.0391 2.4253 7 6 2.6125 -0.6620 3.5089 8 7 2.9254 -1.9392 3.4497 9 14 2.7904 0.2696 5.1182 10 1 1.4677 0.8055 5.5288 11 1 3.3006 -0.6486 6.1679 12 1 3.7449 1.3926 4.9370 13 6 2.0399 -0.7212 -1.2493 14 1 1.6879 -1.7525 -1.2736 15 6 3.5879 -0.6600 -1.3340 16 6 3.8556 -0.7751 -2.8500 17 7 2.6287 -0.3559 -3.5432 18 6 2.4498 -0.3337 -4.8789 19 8 1.3874 0.0340 -5.3444 20 6 3.5360 -0.7534 -5.7716 21 8 4.7665 -1.1787 -5.4021 22 6 5.4482 -1.4658 -6.5155 23 7 4.6930 -1.2266 -7.5540 24 6 3.5032 -0.7847 -7.1343 25 6 2.3388 -0.3934 -8.0073 26 9 2.4246 0.9684 -8.3165 27 9 2.3690 -1.1426 -9.1884 28 9 1.1417 -0.6427 -7.3275 29 6 1.6269 0.0369 -2.5355 30 1 -0.3632 0.4330 0.9321 31 1 -0.3633 0.5908 -0.8409 32 1 -0.3633 -1.0236 -0.0911 33 1 2.2490 -1.6320 1.1524 34 1 3.2487 -2.3965 4.2417 35 1 3.9580 0.2900 -0.9484 36 1 4.0369 -1.4961 -0.7979 37 1 4.0921 -1.8077 -3.1066 38 1 4.6819 -0.1224 -3.1315 39 1 6.4633 -1.8327 -6.5509 40 1 0.6299 -0.2689 -2.8526 41 1 1.6573 1.1134 -2.3676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501061489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:44 Heat of formation + Delta-G solvation = -157.426430 kcal Electronic energy + Delta-G solvation = -31084.178363 eV Core-core repulsion = 26164.982132 eV Total energy + Delta-G solvation = -4919.196232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.27371 -48.82285 -48.73046 -44.91476 -41.24772 -39.21994 -36.99635 -36.45726 -34.29526 -32.75748 -31.82415 -30.83287 -29.08356 -27.97691 -26.33706 -25.42931 -24.18941 -23.27816 -22.81337 -21.47868 -21.08258 -19.82461 -19.72482 -19.40479 -19.16402 -18.63600 -18.25119 -17.55164 -17.17515 -16.72086 -16.49452 -15.88000 -15.76154 -15.64895 -15.36975 -15.30700 -15.17658 -14.95327 -14.88359 -14.85953 -14.66147 -14.13470 -13.97781 -13.89247 -13.58624 -13.49578 -13.20595 -13.04227 -12.89273 -12.74265 -12.35736 -12.25253 -12.20009 -11.98296 -11.71195 -11.56872 -11.54317 -11.35438 -10.88633 -10.73041 -9.88033 -8.95086 -7.88957 -5.15465 -0.79119 0.83589 0.96698 1.32194 1.51097 1.52198 1.57934 1.58348 1.73404 2.32020 2.59911 2.63580 3.04810 3.15267 3.44140 3.49114 3.52948 3.58560 3.71768 3.84272 4.02175 4.21472 4.27245 4.34632 4.49869 4.60942 4.65997 4.72446 4.81060 4.85277 4.94411 5.01063 5.09768 5.20713 5.30912 5.40307 5.57653 5.63300 5.97282 6.12956 6.33622 6.59303 7.40837 8.16958 8.40150 9.34083 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.002335 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.844652 B =11990.716339 C =12725.361059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.079 0.921 15 C -0.110 4.110 16 C 0.102 3.898 17 N -0.596 5.596 18 C 0.601 3.399 19 O -0.525 6.525 20 C -0.030 4.030 21 O -0.164 6.164 22 C 0.252 3.748 23 N -0.493 5.493 24 C -0.040 4.040 25 C 0.548 3.452 26 F -0.172 7.172 27 F -0.167 7.167 28 F -0.150 7.150 29 C 0.120 3.880 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.328 0.672 40 H 0.083 0.917 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 1.084 -22.685 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.793 3.207 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.205 1.205 13 C -0.114 4.114 14 H 0.098 0.902 15 C -0.148 4.148 16 C -0.020 4.020 17 N -0.328 5.328 18 C 0.387 3.613 19 O -0.404 6.404 20 C -0.089 4.089 21 O -0.050 6.050 22 C 0.028 3.972 23 N -0.219 5.219 24 C -0.165 4.165 25 C 0.492 3.508 26 F -0.153 7.153 27 F -0.149 7.149 28 F -0.131 7.131 29 C -0.002 4.002 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.342 0.658 40 H 0.101 0.899 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.175 1.352 -23.470 24.307 hybrid contribution -0.251 0.027 1.618 1.638 sum 5.924 1.379 -21.852 22.683 Atomic orbital electron populations 1.22388 0.98179 1.00918 1.00677 1.20299 0.92354 0.95010 0.84929 0.93203 1.42500 1.78339 1.10293 1.05896 1.19508 1.34320 0.94120 0.88323 0.90884 1.25401 1.03383 0.96757 1.00950 1.69787 1.52840 1.09967 1.29260 0.85360 0.77737 0.77430 0.80125 1.20995 1.22581 1.20460 1.22489 0.96168 0.99816 0.92956 0.90228 1.22509 0.95198 1.03712 0.93405 1.22373 0.85899 1.01600 0.92080 1.48432 1.17474 1.63002 1.03883 1.16084 0.84831 0.79526 0.80852 1.91013 1.25499 1.48984 1.74875 1.22604 0.86644 1.06314 0.93367 1.84731 1.20698 1.61546 1.37985 1.29921 1.00283 0.92447 0.74590 1.70222 1.00851 1.17446 1.33386 1.21578 0.96048 1.07636 0.91223 1.16893 0.81264 0.74950 0.77654 1.93226 1.96293 1.32512 1.93256 1.93223 1.96593 1.76260 1.48776 1.93381 1.46955 1.93798 1.78981 1.22350 0.92092 1.00000 0.85743 0.94618 0.91335 0.93819 0.79423 0.94238 0.90643 0.90075 0.89495 0.89069 0.65821 0.89905 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.23 71.98 0.66 -4.57 16 2 C 0.18 6.26 2.40 44.99 0.11 6.37 16 3 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 4 N -0.73 -33.10 4.88 -322.94 -1.58 -34.68 16 5 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 6 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 8 N -0.97 -56.31 13.06 21.65 0.28 -56.02 16 9 Si 0.96 44.36 29.55 68.60 2.03 46.39 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 C -0.09 -2.56 2.63 -9.40 -0.02 -2.58 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.11 -2.70 6.19 31.80 0.20 -2.50 16 16 C 0.10 1.92 5.56 86.75 0.48 2.40 16 17 N -0.60 -13.70 3.33 -816.37 -2.72 -16.42 16 18 C 0.60 15.33 7.77 86.46 0.67 16.01 16 19 O -0.53 -16.41 13.39 -4.28 -0.06 -16.47 16 20 C -0.03 -0.63 6.94 24.04 0.17 -0.47 16 21 O -0.16 -2.19 8.51 -7.11 -0.06 -2.25 16 22 C 0.25 2.03 13.21 130.42 1.72 3.75 16 23 N -0.49 -8.61 11.21 -303.13 -3.40 -12.01 16 24 C -0.04 -0.90 6.49 41.83 0.27 -0.63 16 25 C 0.55 13.80 3.34 71.24 0.24 14.03 16 26 F -0.17 -4.42 17.30 44.97 0.78 -3.64 16 27 F -0.17 -4.07 17.27 44.97 0.78 -3.30 16 28 F -0.15 -4.28 13.47 44.97 0.61 -3.68 16 29 C 0.12 2.90 5.52 86.86 0.48 3.38 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.80 7.60 -2.39 -0.02 1.78 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.37 18.30 7.80 -92.70 -0.72 17.58 16 34 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.07 1.96 8.04 -2.38 -0.02 1.94 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.09 1.42 7.71 -2.39 -0.02 1.41 16 38 H 0.09 1.41 7.81 -2.38 -0.02 1.39 16 39 H 0.33 -1.95 8.06 -2.91 -0.02 -1.98 16 40 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 41 H 0.08 1.95 8.03 -2.39 -0.02 1.93 16 Total: -1.00 -69.83 357.86 3.31 -66.51 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.37 Total: 14.94 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.28 Total: 20.62 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -7.41 Total: -119.13 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.12 Total: -18.72 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 2.16 Total: -10.62 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.83 3.31 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501061489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.913 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds