Wall clock time and date at job start Wed Apr 1 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64136 * 2 1 4 4 C 1.54320 * 110.72507 * 123.14654 * 2 1 3 5 5 N 1.47019 * 107.27230 * 96.16679 * 4 2 1 6 6 C 1.34777 * 125.65200 * 178.97474 * 5 4 2 7 7 O 1.21284 * 120.00276 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99695 * 359.97438 * 6 5 4 9 9 S 1.81396 * 109.47071 * 179.97438 * 8 6 5 10 10 C 1.81406 * 101.92193 * 179.97438 * 9 8 6 11 11 O 1.42098 * 108.57993 * 294.48276 * 9 8 6 12 12 O 1.42101 * 108.58055 * 65.51483 * 9 8 6 13 13 C 1.47426 * 108.70606 * 358.94663 * 5 4 2 14 14 C 1.54913 * 104.82930 * 24.12615 * 13 5 4 15 15 H 1.08995 * 111.00761 * 81.06678 * 14 13 5 16 16 N 1.46899 * 111.00465 * 204.91971 * 14 13 5 17 17 C 1.46898 * 110.99810 * 267.19573 * 16 14 13 18 18 C 1.50701 * 109.47049 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00137 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00123 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00283 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99536 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99921 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00232 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99801 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46941 * 90.00003 * 25 23 21 27 27 H 1.48497 * 109.47296 * 209.99691 * 25 23 21 28 28 H 1.48506 * 109.47269 * 329.99996 * 25 23 21 29 29 H 1.09002 * 109.47153 * 298.30586 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.30777 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.30758 * 1 2 3 32 32 H 1.09001 * 109.88687 * 215.59104 * 4 2 1 33 33 H 1.09003 * 109.87981 * 336.59810 * 4 2 1 34 34 H 1.09001 * 109.46881 * 299.99525 * 8 6 5 35 35 H 1.09006 * 109.47455 * 59.99649 * 8 6 5 36 36 H 1.08997 * 109.46653 * 59.99976 * 10 9 8 37 37 H 1.08999 * 109.47313 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47138 * 299.99729 * 10 9 8 39 39 H 1.09002 * 110.36978 * 142.95985 * 13 5 4 40 40 H 1.09003 * 110.36785 * 265.18010 * 13 5 4 41 41 H 1.00898 * 111.00297 * 143.23965 * 16 14 13 42 42 H 1.08996 * 109.47266 * 299.99560 * 17 16 14 43 43 H 1.08999 * 109.47382 * 60.00338 * 17 16 14 44 44 H 0.96999 * 119.99748 * 0.02562 * 20 18 17 45 45 H 0.97000 * 119.99663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 2.3716 -2.1519 0.7424 6 6 2.8851 -3.1453 1.4947 7 8 3.0885 -4.2352 1.0031 8 6 3.2065 -2.9018 2.9468 9 16 3.8766 -4.4194 3.6805 10 6 4.1854 -3.9035 5.3920 11 8 2.8574 -5.4096 3.6826 12 8 5.1235 -4.7085 3.0633 13 6 2.0126 -2.2520 -0.6839 14 6 2.0790 -0.7974 -1.2126 15 1 3.1061 -0.5096 -1.4368 16 7 1.2173 -0.6251 -2.3897 17 6 1.9720 -0.8430 -3.6310 18 6 1.0573 -0.6575 -4.8142 19 8 -0.1088 -0.3724 -4.6405 20 7 1.5349 -0.8085 -6.0654 21 6 0.7026 -0.6403 -7.1419 22 1 -0.3356 -0.3864 -6.9872 23 6 1.1950 -0.7964 -8.4318 24 7 2.4582 -1.1059 -8.6200 25 14 0.0612 -0.5665 -9.8984 26 1 0.0881 0.8551 -10.3268 27 1 0.5180 -1.4294 -11.0173 28 1 -1.3240 -0.9425 -9.5171 29 1 -0.3633 0.4873 0.9048 30 1 -0.3633 -1.0272 -0.0303 31 1 -0.3634 0.5399 -0.8744 32 1 2.9869 -0.3180 1.5780 33 1 1.3274 -0.8199 2.0001 34 1 3.9438 -2.1030 3.0267 35 1 2.2987 -2.6127 3.4764 36 1 3.2491 -3.5844 5.8498 37 1 4.5987 -4.7405 5.9548 38 1 4.8944 -3.0757 5.3996 39 1 2.7294 -2.8807 -1.2123 40 1 1.0046 -2.6519 -0.7943 41 1 0.7795 0.2839 -2.3875 42 1 2.7906 -0.1257 -3.6892 43 1 2.3751 -1.8557 -3.6382 44 1 2.4674 -1.0369 -6.2043 45 1 2.8017 -1.2152 -9.5205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502703721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:21 Heat of formation + Delta-G solvation = -123.828499 kcal Electronic energy + Delta-G solvation = -28292.387377 eV Core-core repulsion = 24051.948753 eV Total energy + Delta-G solvation = -4240.438624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.61643 -38.72809 -37.96679 -37.32259 -36.31626 -34.92931 -33.85667 -32.47024 -31.35393 -31.21974 -29.98849 -28.62617 -26.90296 -26.26798 -24.20330 -22.76504 -20.27736 -19.93549 -19.32205 -19.08425 -18.02795 -17.85678 -17.04943 -16.91417 -16.41583 -16.30045 -15.83589 -15.47049 -15.28154 -15.09928 -14.51696 -14.40069 -13.95082 -13.85148 -13.79254 -13.73405 -13.46988 -13.34747 -13.14882 -12.68681 -12.53352 -12.44415 -12.37165 -12.30441 -12.04011 -11.80130 -11.57097 -11.54693 -11.31777 -11.19786 -11.09843 -10.99772 -10.82133 -10.49461 -10.40044 -10.22991 -9.52451 -9.02658 -8.52781 -8.19361 -7.98083 -6.42853 -3.83912 -0.56695 2.09547 2.27858 2.42331 3.17129 3.26213 3.30253 3.32297 3.53339 3.83418 3.87787 3.98729 4.11284 4.14576 4.25223 4.28391 4.35512 4.54135 4.57276 4.63726 4.99037 5.00544 5.08396 5.09142 5.16622 5.23458 5.27082 5.50901 5.61714 5.65334 5.76551 5.77381 5.87761 5.95273 5.96602 6.21941 6.25822 7.03154 7.08567 7.51859 7.54156 7.59249 8.04410 8.59052 9.16230 9.52347 10.03132 10.74740 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.001889 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.788814 B =14815.179368 C =15611.977698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.091 0.909 4 C 0.103 3.897 5 N -0.606 5.606 6 C 0.555 3.445 7 O -0.526 6.526 8 C -0.656 4.656 9 S 2.454 3.546 10 C -0.662 4.662 11 O -0.919 6.919 12 O -0.920 6.920 13 C 0.113 3.887 14 C 0.076 3.924 15 H 0.064 0.936 16 N -0.653 5.653 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.356 0.644 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 2.853 29.584 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.109 0.891 4 C -0.020 4.020 5 N -0.340 5.340 6 C 0.341 3.659 7 O -0.403 6.403 8 C -0.783 4.783 9 S 2.630 3.370 10 C -0.811 4.811 11 O -0.917 6.917 12 O -0.917 6.917 13 C -0.009 4.009 14 C -0.035 4.035 15 H 0.082 0.918 16 N -0.287 5.287 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.178 0.822 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.415 0.953 28.896 29.246 hybrid contribution 0.551 1.804 -0.421 1.932 sum 4.966 2.757 28.475 29.035 Atomic orbital electron populations 1.21717 0.92715 1.03268 1.01979 1.22412 0.97914 0.98972 0.93311 0.89052 1.22219 1.00346 0.81792 0.97690 1.48218 1.62225 1.11472 1.12063 1.18670 0.77769 0.83874 0.85582 1.90903 1.53262 1.22966 1.73155 1.30887 1.15185 1.26955 1.05303 1.07240 0.75943 0.76366 0.77452 1.30396 1.12046 1.13514 1.25193 1.93610 1.59423 1.52675 1.85947 1.93609 1.42670 1.81424 1.73980 1.22412 1.02378 0.97530 0.78626 1.22678 0.95915 0.94335 0.90612 0.91801 1.59994 1.30826 1.38653 0.99262 1.21782 0.94982 1.01939 0.89759 1.19738 0.88894 0.84915 0.83879 1.90522 1.17708 1.53361 1.85243 1.41867 1.12602 1.61105 1.04288 1.19698 0.94853 1.44683 0.83725 0.87885 1.25277 0.96479 0.97169 0.99044 1.69613 1.13395 1.47949 1.23215 0.85846 0.80057 0.78125 0.80179 1.20442 1.20905 1.19386 0.92800 0.91686 0.91009 0.91057 0.90676 0.82374 0.82351 0.85209 0.84811 0.85215 0.89990 0.89412 0.82182 0.93634 0.89438 0.77431 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.49 37.16 0.32 -0.90 16 2 C -0.11 -0.84 3.40 -88.78 -0.30 -1.14 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.10 0.68 6.07 -3.07 -0.02 0.66 16 5 N -0.61 -6.24 3.33 -170.52 -0.57 -6.80 16 6 C 0.56 6.38 7.87 -10.98 -0.09 6.30 16 7 O -0.53 -8.61 15.88 2.56 0.04 -8.57 16 8 C -0.66 -3.55 5.48 36.01 0.20 -3.35 16 9 S 2.45 18.57 4.60 -107.50 -0.49 18.08 16 10 C -0.66 -1.33 10.62 101.05 1.07 -0.26 16 11 O -0.92 -11.14 17.95 -59.52 -1.07 -12.21 16 12 O -0.92 -11.12 17.94 -59.53 -1.07 -12.19 16 13 C 0.11 1.40 6.28 -2.53 -0.02 1.38 16 14 C 0.08 0.83 3.17 -65.56 -0.21 0.63 16 15 H 0.06 0.67 7.83 -51.93 -0.41 0.27 16 16 N -0.65 -9.45 5.38 -105.72 -0.57 -10.02 16 17 C 0.05 0.80 6.03 -4.98 -0.03 0.77 16 18 C 0.44 10.12 7.82 -10.98 -0.09 10.03 16 19 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 20 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 31 H 0.07 0.73 6.75 -51.93 -0.35 0.38 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.36 7.84 -51.93 -0.41 -0.05 16 34 H 0.16 0.25 8.14 -51.92 -0.42 -0.17 16 35 H 0.16 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.13 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.13 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 40 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 41 H 0.36 5.18 6.72 -39.29 -0.26 4.92 16 42 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -40.53 387.55 -8.25 -48.78 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.69 Total: 8.17 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 0.60 Total: 6.15 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.47 Total: -54.76 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.01 Total: -48.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 18.57 SS G_CDS: -0.49 Total: 18.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.53 -8.25 -48.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502703721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.047 kcal (2) G-P(sol) polarization free energy of solvation -40.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds