Wall clock time and date at job start Wed Apr 1 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47407 * 2 1 4 4 C 1.52997 * 109.46848 * 239.99799 * 2 1 3 5 5 N 1.46907 * 109.47001 * 185.18427 * 4 2 1 6 6 C 1.46901 * 110.99810 * 163.93941 * 5 4 2 7 7 C 1.46901 * 111.00039 * 287.89194 * 5 4 2 8 8 C 1.50697 * 109.46870 * 169.99796 * 7 5 4 9 9 O 1.21295 * 120.00029 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99921 * 180.02562 * 8 7 5 11 11 C 1.37100 * 120.00368 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99545 * 359.97438 * 11 10 8 13 13 C 1.38944 * 120.00258 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99916 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00016 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47332 * 89.99878 * 15 13 11 17 17 H 1.48501 * 109.46968 * 209.99896 * 15 13 11 18 18 H 1.48497 * 109.47035 * 329.99942 * 15 13 11 19 19 N 1.46505 * 109.46875 * 120.00121 * 2 1 3 20 20 C 1.34776 * 119.99805 * 274.59925 * 19 2 1 21 21 O 1.21276 * 120.00120 * 0.02562 * 20 19 2 22 22 C 1.50705 * 119.99693 * 180.02562 * 20 19 2 23 23 C 1.53046 * 113.15220 * 280.37663 * 22 20 19 24 24 S 1.81420 * 89.88848 * 211.85595 * 23 22 20 25 25 O 1.42107 * 112.75233 * 280.47411 * 24 23 22 26 26 O 1.42099 * 112.75492 * 136.72949 * 24 23 22 27 27 C 1.53043 * 113.14867 * 180.02562 * 22 20 19 28 28 H 1.09001 * 109.47129 * 300.00047 * 1 2 3 29 29 H 1.09001 * 109.47355 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47497 * 305.18511 * 4 2 1 32 32 H 1.09004 * 109.47263 * 65.18914 * 4 2 1 33 33 H 1.08994 * 109.47342 * 54.89224 * 6 5 4 34 34 H 1.08998 * 109.47074 * 174.89650 * 6 5 4 35 35 H 1.09002 * 109.47255 * 294.89234 * 6 5 4 36 36 H 1.08996 * 109.46979 * 290.00237 * 7 5 4 37 37 H 1.09001 * 109.46624 * 49.99977 * 7 5 4 38 38 H 0.97005 * 119.99912 * 0.02562 * 10 8 7 39 39 H 0.97004 * 119.99771 * 179.97438 * 14 13 11 40 40 H 0.97006 * 119.99639 * 94.60823 * 19 2 1 41 41 H 1.08997 * 112.49450 * 50.21759 * 22 20 19 42 42 H 1.09002 * 113.14878 * 327.11577 * 23 22 20 43 43 H 1.08998 * 113.14961 * 96.59553 * 23 22 20 44 44 H 1.08999 * 113.14659 * 263.40487 * 27 22 20 45 45 H 1.08998 * 113.14921 * 32.88992 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5037 -0.8306 -1.1883 6 6 3.9975 -1.8271 -2.1481 7 6 4.1389 0.4750 -1.4113 8 6 5.6103 0.3772 -1.1013 9 8 6.0835 -0.6766 -0.7314 10 7 6.4006 1.4607 -1.2350 11 6 7.7395 1.3717 -0.9534 12 1 8.1607 0.4333 -0.6241 13 6 8.5543 2.4886 -1.0918 14 7 9.8374 2.4033 -0.8214 15 14 7.8258 4.1114 -1.6621 16 1 7.3757 4.8937 -0.4827 17 1 8.8553 4.8826 -2.4041 18 1 6.6671 3.8480 -2.5527 19 7 2.0183 -0.6907 1.1962 20 6 2.1546 -0.0164 2.3552 21 8 1.8727 1.1620 2.4079 22 6 2.6575 -0.7267 3.5855 23 6 1.5768 -1.5523 4.2876 24 16 2.3703 -1.2252 5.8859 25 8 3.4977 -2.0579 6.1204 26 8 1.4367 -0.9015 6.9070 27 6 2.7510 0.1854 4.8109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6028 -1.7187 -1.2969 32 1 1.7544 -0.1566 -2.1368 33 1 3.6343 -1.5816 -3.1460 34 1 5.0875 -1.8235 -2.1470 35 1 3.6371 -2.8156 -1.8633 36 1 4.0056 0.7709 -2.4518 37 1 3.6790 1.2186 -0.7603 38 1 6.0222 2.3036 -1.5304 39 1 10.4064 3.1830 -0.9184 40 1 2.2436 -1.6333 1.1540 41 1 3.5726 -1.2883 3.3981 42 1 0.5820 -1.1144 4.2054 43 1 1.5935 -2.6058 4.0085 44 1 3.7514 0.5877 4.9702 45 1 1.9824 0.9580 4.8296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569119610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:49:54 Heat of formation + Delta-G solvation = -99.761666 kcal Electronic energy + Delta-G solvation = -29206.961002 eV Core-core repulsion = 24967.565994 eV Total energy + Delta-G solvation = -4239.395008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -40.26432 -38.89210 -37.66893 -37.30426 -36.42468 -35.91573 -34.82953 -33.85508 -31.69585 -31.18890 -28.30994 -27.11393 -26.96580 -24.93805 -24.60429 -22.45864 -20.88807 -20.34801 -19.35377 -19.12529 -18.29912 -18.01759 -16.84233 -16.59799 -16.33019 -16.28079 -15.74634 -15.53232 -15.17485 -15.03027 -14.49060 -14.39675 -14.07631 -13.94109 -13.70236 -13.43191 -13.22471 -13.01248 -12.61085 -12.55563 -12.53312 -12.46469 -12.27471 -12.17778 -12.11881 -11.89233 -11.78309 -11.64652 -11.34444 -11.29427 -11.14953 -10.78048 -10.68421 -10.60486 -9.99495 -9.87402 -9.55544 -9.10629 -8.61285 -8.20338 -8.07058 -6.32933 -3.84291 -0.19903 1.61762 2.50517 3.01268 3.01808 3.06719 3.14444 3.34475 3.70156 3.73967 3.80760 3.87265 4.09054 4.27175 4.50423 4.57800 4.80436 4.81807 4.84295 4.99214 5.04754 5.09121 5.19622 5.27302 5.39326 5.39579 5.47281 5.50908 5.57798 5.61434 5.76922 5.80609 5.82770 5.92391 5.97317 6.36332 6.44368 7.05036 7.17570 7.47197 7.56205 8.12273 8.16621 8.57935 8.93135 9.40590 9.80755 10.80075 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.003143 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.172062 B = 8906.102156 C =10431.642290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.088 0.912 4 C 0.043 3.957 5 N -0.516 5.516 6 C 0.023 3.977 7 C 0.039 3.961 8 C 0.453 3.547 9 O -0.560 6.560 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.043 3.957 14 N -0.880 5.880 15 Si 0.878 3.122 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.700 5.700 20 C 0.543 3.457 21 O -0.538 6.538 22 C -0.096 4.096 23 C -0.593 4.593 24 S 2.417 3.583 25 O -0.908 6.908 26 O -0.925 6.925 27 C -0.579 4.579 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.406 0.594 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.677 -6.685 4.424 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.125 4.125 7 C -0.092 4.092 8 C 0.239 3.761 9 O -0.442 6.442 10 N -0.229 5.229 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.705 3.295 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.350 5.350 20 C 0.326 3.674 21 O -0.414 6.414 22 C -0.119 4.119 23 C -0.721 4.721 24 S 2.597 3.403 25 O -0.905 6.905 26 O -0.922 6.922 27 C -0.708 4.708 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.240 0.760 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.037 -7.066 6.297 23.068 hybrid contribution -0.575 1.716 -2.582 3.153 sum -21.612 -5.351 3.715 22.572 Atomic orbital electron populations 1.22150 0.95021 1.02149 1.02687 1.20998 0.93310 0.97812 0.84036 0.89368 1.22497 0.89090 1.00979 0.96043 1.61555 1.03155 1.07158 1.52065 1.22534 1.03974 0.94510 0.91475 1.21957 0.95356 0.91899 0.99986 1.19581 0.86955 0.85021 0.84554 1.90522 1.75216 1.28449 1.50016 1.42225 1.09263 1.10208 1.61249 1.19412 0.81046 1.00198 1.42686 0.86257 1.25026 0.95305 0.98067 0.97660 1.69619 1.03864 1.30766 1.47789 0.86694 0.79193 0.84232 0.79401 1.19535 1.20154 1.19582 1.45685 1.66399 1.14148 1.08750 1.19577 0.77264 0.86791 0.83740 1.90698 1.50417 1.15500 1.84831 1.21592 0.99655 0.96426 0.94222 1.30963 1.09578 1.08712 1.22867 1.08256 0.76641 0.79316 0.76062 1.93751 1.48166 1.63355 1.85226 1.93647 1.61440 1.82209 1.54882 1.30861 1.13314 1.17586 1.09017 0.91847 0.91615 0.92354 0.90083 0.93298 0.96681 0.88565 0.91938 0.93343 0.89403 0.79768 0.91597 0.75956 0.84210 0.83605 0.84914 0.84908 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.49 37.16 0.35 -0.96 16 2 C 0.14 1.48 2.52 -67.93 -0.17 1.31 16 3 H 0.09 1.12 6.22 -51.93 -0.32 0.80 16 4 C 0.04 0.42 4.53 -3.82 -0.02 0.41 16 5 N -0.52 -7.18 4.17 -244.37 -1.02 -8.20 16 6 C 0.02 0.31 9.19 60.07 0.55 0.87 16 7 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 8 C 0.45 10.00 7.42 -10.99 -0.08 9.92 16 9 O -0.56 -14.25 13.96 5.54 0.08 -14.18 16 10 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 11 C -0.30 -8.54 10.16 -14.93 -0.15 -8.70 16 12 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 14 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 15 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 19 N -0.70 -7.33 4.79 -53.81 -0.26 -7.59 16 20 C 0.54 6.56 7.30 -10.98 -0.08 6.48 16 21 O -0.54 -8.34 15.60 5.56 0.09 -8.26 16 22 C -0.10 -0.86 3.82 -91.72 -0.35 -1.21 16 23 C -0.59 -3.34 7.48 37.18 0.28 -3.06 16 24 S 2.42 17.08 7.55 -107.50 -0.81 16.27 16 25 O -0.91 -9.55 18.18 -57.30 -1.04 -10.59 16 26 O -0.92 -9.44 18.18 -57.30 -1.04 -10.48 16 27 C -0.58 -4.76 7.18 37.18 0.27 -4.50 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.66 7.99 -51.93 -0.42 0.24 16 32 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 33 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 34 H 0.10 1.71 5.79 -51.93 -0.30 1.41 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.09 1.35 6.50 -51.93 -0.34 1.01 16 38 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.41 3.59 8.61 -40.82 -0.35 3.23 16 41 H 0.14 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.15 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.15 1.30 7.57 -51.93 -0.39 0.90 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -39.31 383.39 -8.31 -47.62 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.55 Total: 11.52 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.47 Total: 2.24 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.56 Total: -54.67 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.92 Total: -43.51 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Atomic # 16 Polarization: 17.08 SS G_CDS: -0.81 Total: 16.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.31 -8.31 -47.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569119610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.146 kcal (2) G-P(sol) polarization free energy of solvation -39.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds