Wall clock time and date at job start Wed Apr 1 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47407 * 2 1 4 4 C 1.52997 * 109.46848 * 239.99799 * 2 1 3 5 5 N 1.46907 * 109.47001 * 185.18427 * 4 2 1 6 6 C 1.46901 * 110.99810 * 163.93941 * 5 4 2 7 7 C 1.46901 * 111.00039 * 287.89194 * 5 4 2 8 8 C 1.50697 * 109.46870 * 169.99796 * 7 5 4 9 9 O 1.21295 * 120.00029 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99921 * 180.02562 * 8 7 5 11 11 C 1.37100 * 120.00368 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99545 * 359.97438 * 11 10 8 13 13 C 1.38944 * 120.00258 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99916 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00016 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47332 * 89.99878 * 15 13 11 17 17 H 1.48501 * 109.46968 * 209.99896 * 15 13 11 18 18 H 1.48497 * 109.47035 * 329.99942 * 15 13 11 19 19 N 1.46505 * 109.46875 * 120.00121 * 2 1 3 20 20 C 1.34776 * 119.99805 * 274.59925 * 19 2 1 21 21 O 1.21276 * 120.00120 * 0.02562 * 20 19 2 22 22 C 1.50705 * 119.99693 * 180.02562 * 20 19 2 23 23 C 1.53046 * 113.15220 * 280.37663 * 22 20 19 24 24 S 1.81420 * 89.88848 * 211.85595 * 23 22 20 25 25 O 1.42107 * 112.75233 * 280.47411 * 24 23 22 26 26 O 1.42099 * 112.75492 * 136.72949 * 24 23 22 27 27 C 1.53043 * 113.14867 * 180.02562 * 22 20 19 28 28 H 1.09001 * 109.47129 * 300.00047 * 1 2 3 29 29 H 1.09001 * 109.47355 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47497 * 305.18511 * 4 2 1 32 32 H 1.09004 * 109.47263 * 65.18914 * 4 2 1 33 33 H 1.08994 * 109.47342 * 54.89224 * 6 5 4 34 34 H 1.08998 * 109.47074 * 174.89650 * 6 5 4 35 35 H 1.09002 * 109.47255 * 294.89234 * 6 5 4 36 36 H 1.08996 * 109.46979 * 290.00237 * 7 5 4 37 37 H 1.09001 * 109.46624 * 49.99977 * 7 5 4 38 38 H 0.97005 * 119.99912 * 0.02562 * 10 8 7 39 39 H 0.97004 * 119.99771 * 179.97438 * 14 13 11 40 40 H 0.97006 * 119.99639 * 94.60823 * 19 2 1 41 41 H 1.08997 * 112.49450 * 50.21759 * 22 20 19 42 42 H 1.09002 * 113.14878 * 327.11577 * 23 22 20 43 43 H 1.08998 * 113.14961 * 96.59553 * 23 22 20 44 44 H 1.08999 * 113.14659 * 263.40487 * 27 22 20 45 45 H 1.08998 * 113.14921 * 32.88992 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5037 -0.8306 -1.1883 6 6 3.9975 -1.8271 -2.1481 7 6 4.1389 0.4750 -1.4113 8 6 5.6103 0.3772 -1.1013 9 8 6.0835 -0.6766 -0.7314 10 7 6.4006 1.4607 -1.2350 11 6 7.7395 1.3717 -0.9534 12 1 8.1607 0.4333 -0.6241 13 6 8.5543 2.4886 -1.0918 14 7 9.8374 2.4033 -0.8214 15 14 7.8258 4.1114 -1.6621 16 1 7.3757 4.8937 -0.4827 17 1 8.8553 4.8826 -2.4041 18 1 6.6671 3.8480 -2.5527 19 7 2.0183 -0.6907 1.1962 20 6 2.1546 -0.0164 2.3552 21 8 1.8727 1.1620 2.4079 22 6 2.6575 -0.7267 3.5855 23 6 1.5768 -1.5523 4.2876 24 16 2.3703 -1.2252 5.8859 25 8 3.4977 -2.0579 6.1204 26 8 1.4367 -0.9015 6.9070 27 6 2.7510 0.1854 4.8109 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6028 -1.7187 -1.2969 32 1 1.7544 -0.1566 -2.1368 33 1 3.6343 -1.5816 -3.1460 34 1 5.0875 -1.8235 -2.1470 35 1 3.6371 -2.8156 -1.8633 36 1 4.0056 0.7709 -2.4518 37 1 3.6790 1.2186 -0.7603 38 1 6.0222 2.3036 -1.5304 39 1 10.4064 3.1830 -0.9184 40 1 2.2436 -1.6333 1.1540 41 1 3.5726 -1.2883 3.3981 42 1 0.5820 -1.1144 4.2054 43 1 1.5935 -2.6058 4.0085 44 1 3.7514 0.5877 4.9702 45 1 1.9824 0.9580 4.8296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569119610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:49:53 Heat of formation + Delta-G solvation = -135.372812 kcal Electronic energy + Delta-G solvation = -29208.505218 eV Core-core repulsion = 24967.565994 eV Total energy + Delta-G solvation = -4240.939223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.16753 -40.45530 -38.53869 -38.34067 -37.20009 -36.72413 -36.11252 -35.54157 -33.75667 -32.00901 -29.74219 -27.96193 -27.56447 -26.49176 -25.66377 -23.55581 -21.83518 -21.26294 -21.11590 -20.14674 -19.77106 -18.80942 -17.86565 -17.57269 -17.30741 -17.08578 -16.81492 -16.67579 -16.57674 -16.10545 -15.75472 -15.53656 -15.18009 -15.01101 -14.91067 -14.75815 -14.35361 -14.11152 -14.05793 -13.58013 -13.38196 -13.32905 -13.30127 -13.15318 -12.94221 -12.86817 -12.81721 -12.68321 -12.53119 -12.43205 -12.37795 -12.02984 -12.00072 -11.67451 -11.47031 -11.33070 -10.78686 -10.35255 -10.23681 -9.96967 -9.21235 -8.42607 -6.02442 -0.83937 1.00621 1.26710 1.32631 1.40399 1.63932 1.95090 2.20215 2.23755 2.64436 2.72392 3.09275 3.13312 3.17234 3.22553 3.59622 3.80961 3.95510 4.04979 4.10591 4.19783 4.29276 4.32106 4.34030 4.48351 4.53904 4.58362 4.67602 4.73401 4.81185 4.83568 4.86288 4.96174 5.09314 5.23522 5.33215 5.51432 5.60766 5.89055 6.00519 6.19948 6.58615 6.64434 6.87861 7.31351 7.39329 7.95934 8.74926 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.003143 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.172062 B = 8906.102156 C =10431.642290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 H 0.062 0.938 4 C 0.049 3.951 5 N -0.532 5.532 6 C 0.028 3.972 7 C 0.053 3.947 8 C 0.453 3.547 9 O -0.598 6.598 10 N -0.596 5.596 11 C -0.324 4.324 12 H 0.059 0.941 13 C -0.013 4.013 14 N -0.933 5.933 15 Si 0.959 3.041 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.233 1.233 19 N -0.693 5.693 20 C 0.535 3.465 21 O -0.579 6.579 22 C -0.109 4.109 23 C -0.565 4.565 24 S 2.457 3.543 25 O -0.941 6.941 26 O -0.954 6.954 27 C -0.590 4.590 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.386 0.614 39 H 0.279 0.721 40 H 0.415 0.585 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.129 0.871 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.354 -6.470 2.751 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.078 4.078 5 N -0.256 5.256 6 C -0.120 4.120 7 C -0.078 4.078 8 C 0.241 3.759 9 O -0.482 6.482 10 N -0.238 5.238 11 C -0.453 4.453 12 H 0.077 0.923 13 C -0.212 4.212 14 N -0.574 5.574 15 Si 0.779 3.221 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.157 1.157 19 N -0.344 5.344 20 C 0.319 3.681 21 O -0.459 6.459 22 C -0.132 4.132 23 C -0.695 4.695 24 S 2.640 3.360 25 O -0.939 6.939 26 O -0.951 6.951 27 C -0.719 4.719 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.184 0.816 44 H 0.147 0.853 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.737 -6.888 4.623 26.091 hybrid contribution 0.571 1.497 -2.067 2.615 sum -24.166 -5.391 2.556 24.891 Atomic orbital electron populations 1.22057 0.92983 1.03388 1.02590 1.21074 0.94839 0.96484 0.84124 0.91983 1.22577 0.86017 1.02898 0.96336 1.61486 1.05638 1.05874 1.52617 1.22407 1.01021 0.95770 0.92766 1.21812 0.90496 0.93801 1.01733 1.20827 0.89392 0.83729 0.81967 1.90511 1.76783 1.29993 1.50912 1.42097 1.07750 1.11610 1.62338 1.18990 0.83536 0.98548 1.44266 0.92334 1.26026 0.95418 1.02604 0.97112 1.69794 1.05885 1.32523 1.49229 0.85447 0.79491 0.77497 0.79627 1.18650 1.19787 1.15663 1.45735 1.65582 1.14550 1.08501 1.20038 0.76745 0.86485 0.84787 1.90675 1.52391 1.17253 1.85577 1.21716 1.01010 0.97152 0.93343 1.30788 1.08948 1.10394 1.19329 1.07017 0.75421 0.77854 0.75756 1.93702 1.49997 1.64080 1.86072 1.93602 1.62056 1.82615 1.56797 1.30990 1.13213 1.18297 1.09353 0.93528 0.90171 0.90386 0.87316 0.91371 0.94599 0.93315 0.89731 0.90577 0.88181 0.77898 0.91197 0.74884 0.83738 0.82149 0.81632 0.85251 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.49 71.98 0.68 -1.26 16 2 C 0.14 2.48 2.52 44.99 0.11 2.60 16 3 H 0.06 1.46 6.22 -2.39 -0.01 1.44 16 4 C 0.05 0.77 4.53 86.30 0.39 1.16 16 5 N -0.53 -13.38 4.17 -927.04 -3.87 -17.25 16 6 C 0.03 0.71 9.19 127.69 1.17 1.88 16 7 C 0.05 1.59 5.30 85.56 0.45 2.04 16 8 C 0.45 20.09 7.42 87.66 0.65 20.74 16 9 O -0.60 -31.61 13.96 -3.08 -0.04 -31.65 16 10 N -0.60 -28.33 5.09 -306.99 -1.56 -29.89 16 11 C -0.32 -19.00 10.16 84.04 0.85 -18.15 16 12 H 0.06 4.06 7.39 -2.91 -0.02 4.03 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.93 -56.55 13.96 21.66 0.30 -56.25 16 15 Si 0.96 39.63 27.74 68.60 1.90 41.53 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 19 N -0.69 -13.02 4.79 -442.54 -2.12 -15.14 16 20 C 0.53 12.37 7.30 87.66 0.64 13.01 16 21 O -0.58 -17.85 15.60 -3.02 -0.05 -17.90 16 22 C -0.11 -1.84 3.82 -11.51 -0.04 -1.88 16 23 C -0.56 -5.00 7.48 72.00 0.54 -4.46 16 24 S 2.46 33.11 7.55 -56.49 -0.43 32.68 16 25 O -0.94 -19.53 18.18 -127.88 -2.32 -21.86 16 26 O -0.95 -18.95 18.18 -127.88 -2.32 -21.28 16 27 C -0.59 -9.74 7.18 72.00 0.52 -9.22 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.17 7.99 -2.39 -0.02 1.15 16 32 H 0.07 0.88 8.05 -2.38 -0.02 0.86 16 33 H 0.04 0.75 8.13 -2.39 -0.02 0.73 16 34 H 0.05 1.73 5.79 -2.39 -0.01 1.71 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 37 H 0.10 2.83 6.50 -2.39 -0.02 2.82 16 38 H 0.39 15.58 5.76 -92.70 -0.53 15.04 16 39 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.41 6.17 8.61 -92.70 -0.80 5.37 16 41 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.16 1.10 8.11 -2.39 -0.02 1.08 16 43 H 0.17 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.15 2.59 7.57 -2.39 -0.02 2.57 16 Total: -1.00 -91.86 383.39 -4.43 -96.29 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.36 Total: 34.50 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 6.44 Total: 6.20 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.25 Total: -118.53 kcal Atomic # 8 Polarization: -87.94 SS G_CDS: -4.74 Total: -92.68 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Atomic # 16 Polarization: 33.11 SS G_CDS: -0.43 Total: 32.68 kcal Total: -91.86 -4.43 -96.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569119610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.079 kcal (2) G-P(sol) polarization free energy of solvation -91.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds