Wall clock time and date at job start Wed Apr 1 2020 06:50:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47822 * 2 1
4 4 C 1.53006 * 109.47183 * 120.00155 * 2 1 3
5 5 N 1.46898 * 109.47322 * 175.16090 * 4 2 1
6 6 C 1.46901 * 111.00042 * 198.92220 * 5 4 2
7 7 C 1.46900 * 111.00027 * 74.97120 * 5 4 2
8 8 C 1.50699 * 109.47106 * 189.99762 * 7 5 4
9 9 O 1.21293 * 120.00100 * 0.02562 * 8 7 5
10 10 N 1.34780 * 120.00056 * 179.97438 * 8 7 5
11 11 C 1.37091 * 120.00127 * 180.02562 * 10 8 7
12 12 H 1.08000 * 120.00024 * 359.97438 * 11 10 8
13 13 C 1.38952 * 119.99983 * 180.02562 * 11 10 8
14 14 N 1.31414 * 119.99752 * 179.97438 * 13 11 10
15 15 Si 1.86799 * 120.00065 * 359.97438 * 13 11 10
16 16 H 1.48498 * 109.47245 * 90.00141 * 15 13 11
17 17 H 1.48497 * 109.46939 * 210.00285 * 15 13 11
18 18 H 1.48496 * 109.47179 * 330.00329 * 15 13 11
19 19 N 1.46506 * 109.47285 * 239.99407 * 2 1 3
20 20 C 1.34771 * 119.99844 * 82.99091 * 19 2 1
21 21 O 1.21289 * 119.99806 * 0.02562 * 20 19 2
22 22 C 1.50698 * 120.00454 * 180.02562 * 20 19 2
23 23 C 1.55884 * 110.82659 * 179.97438 * 22 20 19
24 24 S 1.83082 * 82.43987 * 217.25977 * 23 22 20
25 25 O 1.42107 * 111.35838 * 130.46496 * 24 23 22
26 26 O 1.42095 * 111.36414 * 269.41412 * 24 23 22
27 27 C 1.56453 * 110.95074 * 66.21690 * 22 20 19
28 28 H 1.08999 * 109.47374 * 180.02562 * 1 2 3
29 29 H 1.09006 * 109.46995 * 300.00582 * 1 2 3
30 30 H 1.08997 * 109.47268 * 60.00220 * 1 2 3
31 31 H 1.09005 * 109.46686 * 295.15804 * 4 2 1
32 32 H 1.08995 * 109.47278 * 55.15535 * 4 2 1
33 33 H 1.09002 * 109.46440 * 54.12190 * 6 5 4
34 34 H 1.08999 * 109.47092 * 174.12295 * 6 5 4
35 35 H 1.08996 * 109.47162 * 294.12311 * 6 5 4
36 36 H 1.09003 * 109.46856 * 310.00382 * 7 5 4
37 37 H 1.09004 * 109.47186 * 69.99588 * 7 5 4
38 38 H 0.97001 * 119.99375 * 0.02562 * 10 8 7
39 39 H 0.97007 * 119.99720 * 180.02562 * 14 13 11
40 40 H 0.97001 * 120.00301 * 262.99637 * 19 2 1
41 41 H 1.08996 * 110.39578 * 303.18119 * 22 20 19
42 42 H 1.09007 * 114.37677 * 103.86586 * 23 22 20
43 43 H 1.08993 * 114.38151 * 330.65657 * 23 22 20
44 44 H 1.09004 * 114.38195 * 29.32995 * 27 22 20
45 45 H 1.09006 * 114.50236 * 255.99566 * 27 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 1.2493
5 7 3.5043 -0.8233 1.1923
6 6 3.9951 -1.8668 2.1024
7 6 4.1340 0.4708 1.4867
8 6 5.6078 0.3932 1.1817
9 8 6.0864 -0.6385 0.7601
10 7 6.3939 1.4706 1.3765
11 6 7.7345 1.4002 1.0986
12 1 8.1608 0.4813 0.7239
13 6 8.5450 2.5107 1.2999
14 7 9.8302 2.4431 1.0339
15 14 7.8078 4.0998 1.9485
16 1 7.8619 4.1011 3.4325
17 1 8.5806 5.2543 1.4240
18 1 6.3948 4.2074 1.5047
19 7 2.0183 -0.6908 -1.1961
20 6 2.1087 -0.0290 -2.3667
21 8 1.7861 1.1385 -2.4298
22 6 2.6105 -0.7396 -3.5973
23 6 2.6270 0.2218 -4.8243
24 16 2.1049 -1.2923 -5.7115
25 8 0.9693 -1.0470 -6.5298
26 8 3.2247 -2.0199 -6.1970
27 6 1.6131 -1.8599 -4.0422
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5140 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7491 -0.1598 2.1371
32 1 1.6075 -1.7208 1.2937
33 1 3.4877 -2.8066 1.8849
34 1 5.0690 -1.9932 1.9648
35 1 3.7928 -1.5746 3.1329
36 1 3.6760 1.2459 0.8722
37 1 3.9932 0.7121 2.5403
38 1 6.0110 2.2957 1.7133
39 1 10.3961 3.2183 1.1748
40 1 2.2766 -1.6244 -1.1456
41 1 3.6014 -1.1564 -3.4177
42 1 3.6177 0.5847 -5.0981
43 1 1.8717 1.0069 -4.7910
44 1 0.5717 -1.6620 -3.7883
45 1 1.9335 -2.8730 -3.7990
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569119613.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:50:00
Heat of formation + Delta-G solvation = -99.807528 kcal
Electronic energy + Delta-G solvation = -29197.337155 eV
Core-core repulsion = 24957.940158 eV
Total energy + Delta-G solvation = -4239.396997 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 2.91 seconds
Orbital eigenvalues (eV)
-40.25317 -38.88568 -37.51451 -37.25099 -36.34406 -35.47103 -34.87149 -33.87669
-31.71226 -31.17781 -28.33313 -27.80363 -27.11055 -24.77576 -24.52198 -22.44300
-20.89020 -20.29675 -19.38244 -19.07548 -18.32449 -18.00968 -16.98923 -16.81303
-16.34238 -16.25327 -15.69703 -15.51335 -15.14515 -15.03558 -14.46418 -14.36733
-13.98366 -13.89694 -13.75806 -13.62958 -13.24269 -13.04529 -12.67102 -12.54562
-12.48158 -12.46370 -12.41034 -12.27007 -12.14636 -12.05636 -11.87946 -11.62971
-11.39058 -11.19282 -10.99663 -10.81620 -10.74242 -10.62011 -10.00953 -9.90033
-9.57474 -9.14612 -8.65388 -8.22659 -8.07458 -6.34453 -3.85896 -0.35092
1.88680 2.39568 2.89839 3.00996 3.04282 3.13135 3.18694 3.57769
3.67707 3.68613 3.73278 3.84152 4.07569 4.45806 4.51541 4.72402
4.78522 4.80126 4.95245 5.03547 5.07182 5.17734 5.24661 5.28714
5.37695 5.45005 5.46548 5.49280 5.57657 5.72026 5.78686 5.80497
5.89572 5.96148 6.35047 6.42071 7.01946 7.15342 7.41585 7.54550
8.09972 8.10677 8.56272 8.91520 9.38869 9.79000 10.78519
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.010403 B = 0.003024 C = 0.002643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2690.878127 B = 9257.491045 C =10592.118200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.145 3.855
3 H 0.087 0.913
4 C 0.042 3.958
5 N -0.516 5.516
6 C 0.021 3.979
7 C 0.040 3.960
8 C 0.453 3.547
9 O -0.561 6.561
10 N -0.590 5.590
11 C -0.305 4.305
12 H 0.120 0.880
13 C 0.042 3.958
14 N -0.880 5.880
15 Si 0.878 3.122
16 H -0.271 1.271
17 H -0.276 1.276
18 H -0.269 1.269
19 N -0.699 5.699
20 C 0.540 3.460
21 O -0.536 6.536
22 C -0.169 4.169
23 C -0.535 4.535
24 S 2.379 3.621
25 O -0.935 6.935
26 O -0.918 6.918
27 C -0.560 4.560
28 H 0.057 0.943
29 H 0.065 0.935
30 H 0.064 0.936
31 H 0.050 0.950
32 H 0.081 0.919
33 H 0.060 0.940
34 H 0.098 0.902
35 H 0.016 0.984
36 H 0.087 0.913
37 H 0.049 0.951
38 H 0.370 0.630
39 H 0.274 0.726
40 H 0.406 0.594
41 H 0.143 0.857
42 H 0.151 0.849
43 H 0.159 0.841
44 H 0.150 0.850
45 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.409 -6.839 -3.949 22.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.040 3.960
3 H 0.105 0.895
4 C -0.087 4.087
5 N -0.240 5.240
6 C -0.126 4.126
7 C -0.091 4.091
8 C 0.239 3.761
9 O -0.443 6.443
10 N -0.229 5.229
11 C -0.434 4.434
12 H 0.137 0.863
13 C -0.161 4.161
14 N -0.520 5.520
15 Si 0.705 3.295
16 H -0.197 1.197
17 H -0.201 1.201
18 H -0.195 1.195
19 N -0.349 5.349
20 C 0.324 3.676
21 O -0.413 6.413
22 C -0.194 4.194
23 C -0.665 4.665
24 S 2.562 3.438
25 O -0.932 6.932
26 O -0.915 6.915
27 C -0.688 4.688
28 H 0.077 0.923
29 H 0.084 0.916
30 H 0.083 0.917
31 H 0.068 0.932
32 H 0.099 0.901
33 H 0.079 0.921
34 H 0.117 0.883
35 H 0.035 0.965
36 H 0.106 0.894
37 H 0.067 0.933
38 H 0.202 0.798
39 H 0.084 0.916
40 H 0.241 0.759
41 H 0.161 0.839
42 H 0.169 0.831
43 H 0.177 0.823
44 H 0.168 0.832
45 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -20.966 -7.142 -5.819 22.900
hybrid contribution -0.281 1.569 2.633 3.078
sum -21.247 -5.573 -3.185 22.195
Atomic orbital electron populations
1.22153 0.94968 1.02174 1.02796 1.20997 0.93319 0.97728 0.83967
0.89489 1.22505 0.89103 1.01014 0.96072 1.61558 1.03312 1.05684
1.53432 1.22575 1.04311 0.93433 0.92291 1.21972 0.95372 0.92119
0.99639 1.19578 0.86972 0.84944 0.84625 1.90510 1.75014 1.29908
1.48839 1.42220 1.09158 1.11737 1.59803 1.19409 0.80822 1.01507
1.41633 0.86266 1.25033 0.95320 0.98030 0.97689 1.69622 1.03897
1.31034 1.47451 0.86691 0.79234 0.83852 0.79760 1.19650 1.20090
1.19478 1.45679 1.65859 1.15357 1.07999 1.19527 0.77637 0.86631
0.83796 1.90710 1.49488 1.15993 1.85075 1.23466 1.03014 0.95151
0.97730 1.30821 1.14415 1.15347 1.05891 1.10261 0.76197 0.80114
0.77190 1.93594 1.50224 1.83641 1.65729 1.93694 1.50886 1.69113
1.77835 1.31009 1.07114 1.05676 1.25027 0.92346 0.91582 0.91731
0.93172 0.90104 0.92147 0.88313 0.96544 0.89445 0.93279 0.79762
0.91580 0.75910 0.83943 0.83128 0.82291 0.83173 0.82896
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 45.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.30 9.46 37.15 0.35 -0.94 16
2 C 0.15 1.46 2.55 -67.93 -0.17 1.29 16
3 H 0.09 1.09 6.41 -51.93 -0.33 0.76 16
4 C 0.04 0.40 4.54 -3.82 -0.02 0.39 16
5 N -0.52 -7.04 4.16 -244.37 -1.02 -8.05 16
6 C 0.02 0.29 9.17 60.07 0.55 0.84 16
7 C 0.04 0.64 5.28 -4.98 -0.03 0.62 16
8 C 0.45 9.90 7.52 -10.98 -0.08 9.82 16
9 O -0.56 -14.15 13.88 5.55 0.08 -14.08 16
10 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16
11 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16
12 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16
13 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16
14 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16
15 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16
16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16
18 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16
19 N -0.70 -7.09 4.83 -53.80 -0.26 -7.35 16
20 C 0.54 6.28 7.14 -10.99 -0.08 6.20 16
21 O -0.54 -8.03 15.39 5.55 0.09 -7.95 16
22 C -0.17 -1.43 3.22 -88.37 -0.28 -1.72 16
23 C -0.53 -4.25 8.20 38.70 0.32 -3.94 16
24 S 2.38 17.76 6.80 -107.50 -0.73 17.03 16
25 O -0.94 -10.15 18.18 -57.47 -1.04 -11.20 16
26 O -0.92 -10.05 18.18 -57.47 -1.04 -11.10 16
27 C -0.56 -2.94 8.54 39.02 0.33 -2.61 16
28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16
31 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16
32 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16
33 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16
34 H 0.10 1.73 5.92 -51.93 -0.31 1.42 16
35 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16
36 H 0.09 1.32 6.66 -51.93 -0.35 0.97 16
37 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16
38 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16
39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
40 H 0.41 3.47 8.58 -40.82 -0.35 3.12 16
41 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16
43 H 0.16 1.32 7.40 -51.93 -0.38 0.93 16
44 H 0.15 0.63 8.10 -51.93 -0.42 0.21 16
45 H 0.15 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 383.58 15.07 5.78 5.78
Total: -1.00 -39.35 383.58 -8.05 -47.40
By element:
Atomic # 1 Polarization: 17.74 SS G_CDS: -6.55 Total: 11.19 kcal
Atomic # 6 Polarization: 1.71 SS G_CDS: 0.64 Total: 2.35 kcal
Atomic # 7 Polarization: -53.50 SS G_CDS: -0.56 Total: -54.06 kcal
Atomic # 8 Polarization: -42.39 SS G_CDS: -1.93 Total: -44.32 kcal
Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal
Atomic # 16 Polarization: 17.76 SS G_CDS: -0.73 Total: 17.03 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -39.35 -8.05 -47.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569119613.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.406 kcal
(2) G-P(sol) polarization free energy of solvation -39.348 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.92 seconds