Wall clock time and date at job start Wed Apr 1 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47822 * 2 1 4 4 C 1.53006 * 109.47183 * 120.00155 * 2 1 3 5 5 N 1.46898 * 109.47322 * 175.16090 * 4 2 1 6 6 C 1.46901 * 111.00042 * 198.92220 * 5 4 2 7 7 C 1.46900 * 111.00027 * 74.97120 * 5 4 2 8 8 C 1.50699 * 109.47106 * 189.99762 * 7 5 4 9 9 O 1.21293 * 120.00100 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00056 * 179.97438 * 8 7 5 11 11 C 1.37091 * 120.00127 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00024 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99983 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99752 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47245 * 90.00141 * 15 13 11 17 17 H 1.48497 * 109.46939 * 210.00285 * 15 13 11 18 18 H 1.48496 * 109.47179 * 330.00329 * 15 13 11 19 19 N 1.46506 * 109.47285 * 239.99407 * 2 1 3 20 20 C 1.34771 * 119.99844 * 82.99091 * 19 2 1 21 21 O 1.21289 * 119.99806 * 0.02562 * 20 19 2 22 22 C 1.50698 * 120.00454 * 180.02562 * 20 19 2 23 23 C 1.55884 * 110.82659 * 179.97438 * 22 20 19 24 24 S 1.83082 * 82.43987 * 217.25977 * 23 22 20 25 25 O 1.42107 * 111.35838 * 130.46496 * 24 23 22 26 26 O 1.42095 * 111.36414 * 269.41412 * 24 23 22 27 27 C 1.56453 * 110.95074 * 66.21690 * 22 20 19 28 28 H 1.08999 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46995 * 300.00582 * 1 2 3 30 30 H 1.08997 * 109.47268 * 60.00220 * 1 2 3 31 31 H 1.09005 * 109.46686 * 295.15804 * 4 2 1 32 32 H 1.08995 * 109.47278 * 55.15535 * 4 2 1 33 33 H 1.09002 * 109.46440 * 54.12190 * 6 5 4 34 34 H 1.08999 * 109.47092 * 174.12295 * 6 5 4 35 35 H 1.08996 * 109.47162 * 294.12311 * 6 5 4 36 36 H 1.09003 * 109.46856 * 310.00382 * 7 5 4 37 37 H 1.09004 * 109.47186 * 69.99588 * 7 5 4 38 38 H 0.97001 * 119.99375 * 0.02562 * 10 8 7 39 39 H 0.97007 * 119.99720 * 180.02562 * 14 13 11 40 40 H 0.97001 * 120.00301 * 262.99637 * 19 2 1 41 41 H 1.08996 * 110.39578 * 303.18119 * 22 20 19 42 42 H 1.09007 * 114.37677 * 103.86586 * 23 22 20 43 43 H 1.08993 * 114.38151 * 330.65657 * 23 22 20 44 44 H 1.09004 * 114.38195 * 29.32995 * 27 22 20 45 45 H 1.09006 * 114.50236 * 255.99566 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5043 -0.8233 1.1923 6 6 3.9951 -1.8668 2.1024 7 6 4.1340 0.4708 1.4867 8 6 5.6078 0.3932 1.1817 9 8 6.0864 -0.6385 0.7601 10 7 6.3939 1.4706 1.3765 11 6 7.7345 1.4002 1.0986 12 1 8.1608 0.4813 0.7239 13 6 8.5450 2.5107 1.2999 14 7 9.8302 2.4431 1.0339 15 14 7.8078 4.0998 1.9485 16 1 7.8619 4.1011 3.4325 17 1 8.5806 5.2543 1.4240 18 1 6.3948 4.2074 1.5047 19 7 2.0183 -0.6908 -1.1961 20 6 2.1087 -0.0290 -2.3667 21 8 1.7861 1.1385 -2.4298 22 6 2.6105 -0.7396 -3.5973 23 6 2.6270 0.2218 -4.8243 24 16 2.1049 -1.2923 -5.7115 25 8 0.9693 -1.0470 -6.5298 26 8 3.2247 -2.0199 -6.1970 27 6 1.6131 -1.8599 -4.0422 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7491 -0.1598 2.1371 32 1 1.6075 -1.7208 1.2937 33 1 3.4877 -2.8066 1.8849 34 1 5.0690 -1.9932 1.9648 35 1 3.7928 -1.5746 3.1329 36 1 3.6760 1.2459 0.8722 37 1 3.9932 0.7121 2.5403 38 1 6.0110 2.2957 1.7133 39 1 10.3961 3.2183 1.1748 40 1 2.2766 -1.6244 -1.1456 41 1 3.6014 -1.1564 -3.4177 42 1 3.6177 0.5847 -5.0981 43 1 1.8717 1.0069 -4.7910 44 1 0.5717 -1.6620 -3.7883 45 1 1.9335 -2.8730 -3.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569119613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:00 Heat of formation + Delta-G solvation = -99.807528 kcal Electronic energy + Delta-G solvation = -29197.337155 eV Core-core repulsion = 24957.940158 eV Total energy + Delta-G solvation = -4239.396997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -40.25317 -38.88568 -37.51451 -37.25099 -36.34406 -35.47103 -34.87149 -33.87669 -31.71226 -31.17781 -28.33313 -27.80363 -27.11055 -24.77576 -24.52198 -22.44300 -20.89020 -20.29675 -19.38244 -19.07548 -18.32449 -18.00968 -16.98923 -16.81303 -16.34238 -16.25327 -15.69703 -15.51335 -15.14515 -15.03558 -14.46418 -14.36733 -13.98366 -13.89694 -13.75806 -13.62958 -13.24269 -13.04529 -12.67102 -12.54562 -12.48158 -12.46370 -12.41034 -12.27007 -12.14636 -12.05636 -11.87946 -11.62971 -11.39058 -11.19282 -10.99663 -10.81620 -10.74242 -10.62011 -10.00953 -9.90033 -9.57474 -9.14612 -8.65388 -8.22659 -8.07458 -6.34453 -3.85896 -0.35092 1.88680 2.39568 2.89839 3.00996 3.04282 3.13135 3.18694 3.57769 3.67707 3.68613 3.73278 3.84152 4.07569 4.45806 4.51541 4.72402 4.78522 4.80126 4.95245 5.03547 5.07182 5.17734 5.24661 5.28714 5.37695 5.45005 5.46548 5.49280 5.57657 5.72026 5.78686 5.80497 5.89572 5.96148 6.35047 6.42071 7.01946 7.15342 7.41585 7.54550 8.09972 8.10677 8.56272 8.91520 9.38869 9.79000 10.78519 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.003024 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.878127 B = 9257.491045 C =10592.118200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.021 3.979 7 C 0.040 3.960 8 C 0.453 3.547 9 O -0.561 6.561 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.880 5.880 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.699 5.699 20 C 0.540 3.460 21 O -0.536 6.536 22 C -0.169 4.169 23 C -0.535 4.535 24 S 2.379 3.621 25 O -0.935 6.935 26 O -0.918 6.918 27 C -0.560 4.560 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.016 0.984 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.406 0.594 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.150 0.850 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.409 -6.839 -3.949 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.240 5.240 6 C -0.126 4.126 7 C -0.091 4.091 8 C 0.239 3.761 9 O -0.443 6.443 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.705 3.295 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.349 5.349 20 C 0.324 3.676 21 O -0.413 6.413 22 C -0.194 4.194 23 C -0.665 4.665 24 S 2.562 3.438 25 O -0.932 6.932 26 O -0.915 6.915 27 C -0.688 4.688 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.035 0.965 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.241 0.759 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.168 0.832 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.966 -7.142 -5.819 22.900 hybrid contribution -0.281 1.569 2.633 3.078 sum -21.247 -5.573 -3.185 22.195 Atomic orbital electron populations 1.22153 0.94968 1.02174 1.02796 1.20997 0.93319 0.97728 0.83967 0.89489 1.22505 0.89103 1.01014 0.96072 1.61558 1.03312 1.05684 1.53432 1.22575 1.04311 0.93433 0.92291 1.21972 0.95372 0.92119 0.99639 1.19578 0.86972 0.84944 0.84625 1.90510 1.75014 1.29908 1.48839 1.42220 1.09158 1.11737 1.59803 1.19409 0.80822 1.01507 1.41633 0.86266 1.25033 0.95320 0.98030 0.97689 1.69622 1.03897 1.31034 1.47451 0.86691 0.79234 0.83852 0.79760 1.19650 1.20090 1.19478 1.45679 1.65859 1.15357 1.07999 1.19527 0.77637 0.86631 0.83796 1.90710 1.49488 1.15993 1.85075 1.23466 1.03014 0.95151 0.97730 1.30821 1.14415 1.15347 1.05891 1.10261 0.76197 0.80114 0.77190 1.93594 1.50224 1.83641 1.65729 1.93694 1.50886 1.69113 1.77835 1.31009 1.07114 1.05676 1.25027 0.92346 0.91582 0.91731 0.93172 0.90104 0.92147 0.88313 0.96544 0.89445 0.93279 0.79762 0.91580 0.75910 0.83943 0.83128 0.82291 0.83173 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.46 37.15 0.35 -0.94 16 2 C 0.15 1.46 2.55 -67.93 -0.17 1.29 16 3 H 0.09 1.09 6.41 -51.93 -0.33 0.76 16 4 C 0.04 0.40 4.54 -3.82 -0.02 0.39 16 5 N -0.52 -7.04 4.16 -244.37 -1.02 -8.05 16 6 C 0.02 0.29 9.17 60.07 0.55 0.84 16 7 C 0.04 0.64 5.28 -4.98 -0.03 0.62 16 8 C 0.45 9.90 7.52 -10.98 -0.08 9.82 16 9 O -0.56 -14.15 13.88 5.55 0.08 -14.08 16 10 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 11 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16 12 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 14 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 15 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 19 N -0.70 -7.09 4.83 -53.80 -0.26 -7.35 16 20 C 0.54 6.28 7.14 -10.99 -0.08 6.20 16 21 O -0.54 -8.03 15.39 5.55 0.09 -7.95 16 22 C -0.17 -1.43 3.22 -88.37 -0.28 -1.72 16 23 C -0.53 -4.25 8.20 38.70 0.32 -3.94 16 24 S 2.38 17.76 6.80 -107.50 -0.73 17.03 16 25 O -0.94 -10.15 18.18 -57.47 -1.04 -11.20 16 26 O -0.92 -10.05 18.18 -57.47 -1.04 -11.10 16 27 C -0.56 -2.94 8.54 39.02 0.33 -2.61 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 31 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 32 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16 33 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.10 1.73 5.92 -51.93 -0.31 1.42 16 35 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 36 H 0.09 1.32 6.66 -51.93 -0.35 0.97 16 37 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.41 3.47 8.58 -40.82 -0.35 3.12 16 41 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.16 1.32 7.40 -51.93 -0.38 0.93 16 44 H 0.15 0.63 8.10 -51.93 -0.42 0.21 16 45 H 0.15 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -39.35 383.58 -8.05 -47.40 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.55 Total: 11.19 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 0.64 Total: 2.35 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.56 Total: -54.06 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.93 Total: -44.32 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Atomic # 16 Polarization: 17.76 SS G_CDS: -0.73 Total: 17.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.35 -8.05 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569119613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.406 kcal (2) G-P(sol) polarization free energy of solvation -39.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds