Wall clock time and date at job start Wed Apr 1 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47822 * 2 1 4 4 C 1.53006 * 109.47183 * 120.00155 * 2 1 3 5 5 N 1.46898 * 109.47322 * 175.16090 * 4 2 1 6 6 C 1.46901 * 111.00042 * 198.92220 * 5 4 2 7 7 C 1.46900 * 111.00027 * 74.97120 * 5 4 2 8 8 C 1.50699 * 109.47106 * 189.99762 * 7 5 4 9 9 O 1.21293 * 120.00100 * 0.02562 * 8 7 5 10 10 N 1.34780 * 120.00056 * 179.97438 * 8 7 5 11 11 C 1.37091 * 120.00127 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00024 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99983 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99752 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47245 * 90.00141 * 15 13 11 17 17 H 1.48497 * 109.46939 * 210.00285 * 15 13 11 18 18 H 1.48496 * 109.47179 * 330.00329 * 15 13 11 19 19 N 1.46506 * 109.47285 * 239.99407 * 2 1 3 20 20 C 1.34771 * 119.99844 * 82.99091 * 19 2 1 21 21 O 1.21289 * 119.99806 * 0.02562 * 20 19 2 22 22 C 1.50698 * 120.00454 * 180.02562 * 20 19 2 23 23 C 1.55884 * 110.82659 * 179.97438 * 22 20 19 24 24 S 1.83082 * 82.43987 * 217.25977 * 23 22 20 25 25 O 1.42107 * 111.35838 * 130.46496 * 24 23 22 26 26 O 1.42095 * 111.36414 * 269.41412 * 24 23 22 27 27 C 1.56453 * 110.95074 * 66.21690 * 22 20 19 28 28 H 1.08999 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46995 * 300.00582 * 1 2 3 30 30 H 1.08997 * 109.47268 * 60.00220 * 1 2 3 31 31 H 1.09005 * 109.46686 * 295.15804 * 4 2 1 32 32 H 1.08995 * 109.47278 * 55.15535 * 4 2 1 33 33 H 1.09002 * 109.46440 * 54.12190 * 6 5 4 34 34 H 1.08999 * 109.47092 * 174.12295 * 6 5 4 35 35 H 1.08996 * 109.47162 * 294.12311 * 6 5 4 36 36 H 1.09003 * 109.46856 * 310.00382 * 7 5 4 37 37 H 1.09004 * 109.47186 * 69.99588 * 7 5 4 38 38 H 0.97001 * 119.99375 * 0.02562 * 10 8 7 39 39 H 0.97007 * 119.99720 * 180.02562 * 14 13 11 40 40 H 0.97001 * 120.00301 * 262.99637 * 19 2 1 41 41 H 1.08996 * 110.39578 * 303.18119 * 22 20 19 42 42 H 1.09007 * 114.37677 * 103.86586 * 23 22 20 43 43 H 1.08993 * 114.38151 * 330.65657 * 23 22 20 44 44 H 1.09004 * 114.38195 * 29.32995 * 27 22 20 45 45 H 1.09006 * 114.50236 * 255.99566 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5043 -0.8233 1.1923 6 6 3.9951 -1.8668 2.1024 7 6 4.1340 0.4708 1.4867 8 6 5.6078 0.3932 1.1817 9 8 6.0864 -0.6385 0.7601 10 7 6.3939 1.4706 1.3765 11 6 7.7345 1.4002 1.0986 12 1 8.1608 0.4813 0.7239 13 6 8.5450 2.5107 1.2999 14 7 9.8302 2.4431 1.0339 15 14 7.8078 4.0998 1.9485 16 1 7.8619 4.1011 3.4325 17 1 8.5806 5.2543 1.4240 18 1 6.3948 4.2074 1.5047 19 7 2.0183 -0.6908 -1.1961 20 6 2.1087 -0.0290 -2.3667 21 8 1.7861 1.1385 -2.4298 22 6 2.6105 -0.7396 -3.5973 23 6 2.6270 0.2218 -4.8243 24 16 2.1049 -1.2923 -5.7115 25 8 0.9693 -1.0470 -6.5298 26 8 3.2247 -2.0199 -6.1970 27 6 1.6131 -1.8599 -4.0422 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7491 -0.1598 2.1371 32 1 1.6075 -1.7208 1.2937 33 1 3.4877 -2.8066 1.8849 34 1 5.0690 -1.9932 1.9648 35 1 3.7928 -1.5746 3.1329 36 1 3.6760 1.2459 0.8722 37 1 3.9932 0.7121 2.5403 38 1 6.0110 2.2957 1.7133 39 1 10.3961 3.2183 1.1748 40 1 2.2766 -1.6244 -1.1456 41 1 3.6014 -1.1564 -3.4177 42 1 3.6177 0.5847 -5.0981 43 1 1.8717 1.0069 -4.7910 44 1 0.5717 -1.6620 -3.7883 45 1 1.9335 -2.8730 -3.7990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569119613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:49:59 Heat of formation + Delta-G solvation = -135.603464 kcal Electronic energy + Delta-G solvation = -29198.889383 eV Core-core repulsion = 24957.940158 eV Total energy + Delta-G solvation = -4240.949225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13641 -40.43769 -38.44316 -38.23714 -37.10679 -36.30614 -36.03616 -35.56139 -33.75650 -31.96795 -29.74054 -28.37853 -27.94658 -26.49295 -25.38376 -23.51879 -21.80714 -21.21606 -21.07791 -20.15765 -19.72142 -18.78405 -17.85352 -17.68702 -17.48987 -17.13269 -16.80794 -16.65911 -16.51427 -16.05276 -15.73048 -15.54262 -15.11282 -14.98617 -14.77012 -14.67630 -14.34623 -14.28621 -14.09748 -13.60657 -13.37560 -13.27022 -13.20155 -13.17198 -13.12313 -12.89042 -12.82067 -12.79104 -12.63260 -12.47600 -12.37847 -12.01344 -11.73516 -11.64178 -11.46779 -11.45356 -10.76214 -10.35882 -10.23789 -9.97922 -9.21184 -8.42691 -6.02544 -0.97963 1.26921 1.27785 1.31784 1.40805 1.58742 1.95255 2.15156 2.20282 2.51888 2.63462 2.95639 3.02541 3.13546 3.13821 3.22088 3.79139 3.85076 4.04960 4.12282 4.19598 4.22698 4.33238 4.33940 4.48083 4.58014 4.59254 4.67733 4.72291 4.74577 4.80890 4.83764 4.87245 5.09663 5.25607 5.34261 5.51349 5.59405 5.89036 6.00303 6.20228 6.58591 6.61840 6.87969 7.28442 7.39395 7.96179 8.74839 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.003024 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.878127 B = 9257.491045 C =10592.118200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.060 0.940 4 C 0.049 3.951 5 N -0.532 5.532 6 C 0.027 3.973 7 C 0.053 3.947 8 C 0.453 3.547 9 O -0.599 6.599 10 N -0.596 5.596 11 C -0.324 4.324 12 H 0.058 0.942 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.960 3.040 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.237 1.237 19 N -0.693 5.693 20 C 0.533 3.467 21 O -0.576 6.576 22 C -0.179 4.179 23 C -0.540 4.540 24 S 2.401 3.599 25 O -0.971 6.971 26 O -0.956 6.956 27 C -0.521 4.521 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.030 0.970 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.278 0.722 40 H 0.415 0.585 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.170 0.830 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.951 -6.726 -1.962 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.079 4.079 5 N -0.256 5.256 6 C -0.121 4.121 7 C -0.078 4.078 8 C 0.241 3.759 9 O -0.483 6.483 10 N -0.238 5.238 11 C -0.453 4.453 12 H 0.076 0.924 13 C -0.212 4.212 14 N -0.575 5.575 15 Si 0.780 3.220 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.161 1.161 19 N -0.343 5.343 20 C 0.317 3.683 21 O -0.456 6.456 22 C -0.203 4.203 23 C -0.670 4.670 24 S 2.588 3.412 25 O -0.968 6.968 26 O -0.953 6.953 27 C -0.652 4.652 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.252 0.748 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.535 -7.065 -3.848 25.820 hybrid contribution 0.822 1.373 2.039 2.592 sum -23.713 -5.691 -1.809 24.454 Atomic orbital electron populations 1.22064 0.93008 1.03440 1.02634 1.21065 0.94789 0.96398 0.84121 0.92172 1.22582 0.86015 1.02976 0.96327 1.61468 1.05807 1.04420 1.53925 1.22445 1.01637 0.94882 0.93130 1.21838 0.90437 0.94049 1.01492 1.20844 0.89458 0.83569 0.82061 1.90503 1.76610 1.31389 1.49751 1.42095 1.07629 1.13168 1.60913 1.18986 0.83347 0.99984 1.43026 0.92362 1.26041 0.95463 1.02359 0.97366 1.69799 1.05937 1.32721 1.49002 0.85433 0.79768 0.77162 0.79611 1.17936 1.20073 1.16101 1.45730 1.65102 1.15740 1.07740 1.19982 0.77126 0.86344 0.84807 1.90690 1.51374 1.17741 1.85787 1.23645 1.04106 0.95978 0.96563 1.30875 1.14586 1.15717 1.05834 1.09567 0.74746 0.79274 0.77630 1.93539 1.51188 1.84160 1.67913 1.93641 1.52343 1.69832 1.79447 1.31034 1.07582 1.06342 1.20273 0.90301 0.90204 0.93486 0.91286 0.87246 0.89238 0.93121 0.95128 0.88154 0.90434 0.77872 0.91203 0.74822 0.83465 0.82876 0.82730 0.81221 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.46 71.98 0.68 -1.21 16 2 C 0.14 2.41 2.55 44.99 0.11 2.53 16 3 H 0.06 1.38 6.41 -2.39 -0.02 1.36 16 4 C 0.05 0.72 4.54 86.31 0.39 1.11 16 5 N -0.53 -12.95 4.16 -927.03 -3.86 -16.81 16 6 C 0.03 0.66 9.17 127.69 1.17 1.83 16 7 C 0.05 1.56 5.28 85.56 0.45 2.01 16 8 C 0.45 19.80 7.52 87.66 0.66 20.45 16 9 O -0.60 -31.28 13.88 -3.07 -0.04 -31.32 16 10 N -0.60 -28.01 5.09 -306.98 -1.56 -29.58 16 11 C -0.32 -18.87 10.16 84.04 0.85 -18.01 16 12 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.93 -56.32 13.96 21.66 0.30 -56.01 16 15 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 17 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.24 -8.41 6.52 99.48 0.65 -7.76 16 19 N -0.69 -12.28 4.83 -442.53 -2.14 -14.41 16 20 C 0.53 11.65 7.14 87.66 0.63 12.27 16 21 O -0.58 -17.03 15.39 -3.06 -0.05 -17.08 16 22 C -0.18 -2.79 3.22 -9.34 -0.03 -2.82 16 23 C -0.54 -8.63 8.20 72.98 0.60 -8.03 16 24 S 2.40 34.72 6.80 -56.49 -0.38 34.34 16 25 O -0.97 -20.99 18.18 -127.71 -2.32 -23.31 16 26 O -0.96 -20.92 18.18 -127.71 -2.32 -23.24 16 27 C -0.52 -4.03 8.54 73.19 0.62 -3.40 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.07 0.84 8.01 -2.38 -0.02 0.82 16 32 H 0.11 1.07 7.81 -2.39 -0.02 1.05 16 33 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16 34 H 0.05 1.76 5.92 -2.39 -0.01 1.75 16 35 H 0.03 0.66 8.13 -2.39 -0.02 0.64 16 36 H 0.10 2.75 6.66 -2.39 -0.02 2.73 16 37 H 0.08 1.88 8.11 -2.38 -0.02 1.86 16 38 H 0.39 15.37 5.76 -92.71 -0.53 14.83 16 39 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 40 H 0.42 5.72 8.58 -92.71 -0.80 4.92 16 41 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.15 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.15 2.64 7.40 -2.39 -0.02 2.62 16 44 H 0.17 0.80 8.10 -2.38 -0.02 0.78 16 45 H 0.19 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -92.52 383.58 -4.21 -96.74 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.35 Total: 33.07 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.61 Total: 6.43 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.25 Total: -116.81 kcal Atomic # 8 Polarization: -90.22 SS G_CDS: -4.73 Total: -94.96 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Atomic # 16 Polarization: 34.72 SS G_CDS: -0.38 Total: 34.34 kcal Total: -92.52 -4.21 -96.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569119613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal (2) G-P(sol) polarization free energy of solvation -92.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds