Wall clock time and date at job start Wed Apr 1 2020 06:49:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47822 * 2 1
4 4 C 1.53006 * 109.47183 * 120.00155 * 2 1 3
5 5 N 1.46898 * 109.47322 * 175.16090 * 4 2 1
6 6 C 1.46901 * 111.00042 * 198.92220 * 5 4 2
7 7 C 1.46900 * 111.00027 * 74.97120 * 5 4 2
8 8 C 1.50699 * 109.47106 * 189.99762 * 7 5 4
9 9 O 1.21293 * 120.00100 * 0.02562 * 8 7 5
10 10 N 1.34780 * 120.00056 * 179.97438 * 8 7 5
11 11 C 1.37091 * 120.00127 * 180.02562 * 10 8 7
12 12 H 1.08000 * 120.00024 * 359.97438 * 11 10 8
13 13 C 1.38952 * 119.99983 * 180.02562 * 11 10 8
14 14 N 1.31414 * 119.99752 * 179.97438 * 13 11 10
15 15 Si 1.86799 * 120.00065 * 359.97438 * 13 11 10
16 16 H 1.48498 * 109.47245 * 90.00141 * 15 13 11
17 17 H 1.48497 * 109.46939 * 210.00285 * 15 13 11
18 18 H 1.48496 * 109.47179 * 330.00329 * 15 13 11
19 19 N 1.46506 * 109.47285 * 239.99407 * 2 1 3
20 20 C 1.34771 * 119.99844 * 82.99091 * 19 2 1
21 21 O 1.21289 * 119.99806 * 0.02562 * 20 19 2
22 22 C 1.50698 * 120.00454 * 180.02562 * 20 19 2
23 23 C 1.55884 * 110.82659 * 179.97438 * 22 20 19
24 24 S 1.83082 * 82.43987 * 217.25977 * 23 22 20
25 25 O 1.42107 * 111.35838 * 130.46496 * 24 23 22
26 26 O 1.42095 * 111.36414 * 269.41412 * 24 23 22
27 27 C 1.56453 * 110.95074 * 66.21690 * 22 20 19
28 28 H 1.08999 * 109.47374 * 180.02562 * 1 2 3
29 29 H 1.09006 * 109.46995 * 300.00582 * 1 2 3
30 30 H 1.08997 * 109.47268 * 60.00220 * 1 2 3
31 31 H 1.09005 * 109.46686 * 295.15804 * 4 2 1
32 32 H 1.08995 * 109.47278 * 55.15535 * 4 2 1
33 33 H 1.09002 * 109.46440 * 54.12190 * 6 5 4
34 34 H 1.08999 * 109.47092 * 174.12295 * 6 5 4
35 35 H 1.08996 * 109.47162 * 294.12311 * 6 5 4
36 36 H 1.09003 * 109.46856 * 310.00382 * 7 5 4
37 37 H 1.09004 * 109.47186 * 69.99588 * 7 5 4
38 38 H 0.97001 * 119.99375 * 0.02562 * 10 8 7
39 39 H 0.97007 * 119.99720 * 180.02562 * 14 13 11
40 40 H 0.97001 * 120.00301 * 262.99637 * 19 2 1
41 41 H 1.08996 * 110.39578 * 303.18119 * 22 20 19
42 42 H 1.09007 * 114.37677 * 103.86586 * 23 22 20
43 43 H 1.08993 * 114.38151 * 330.65657 * 23 22 20
44 44 H 1.09004 * 114.38195 * 29.32995 * 27 22 20
45 45 H 1.09006 * 114.50236 * 255.99566 * 27 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 1.2493
5 7 3.5043 -0.8233 1.1923
6 6 3.9951 -1.8668 2.1024
7 6 4.1340 0.4708 1.4867
8 6 5.6078 0.3932 1.1817
9 8 6.0864 -0.6385 0.7601
10 7 6.3939 1.4706 1.3765
11 6 7.7345 1.4002 1.0986
12 1 8.1608 0.4813 0.7239
13 6 8.5450 2.5107 1.2999
14 7 9.8302 2.4431 1.0339
15 14 7.8078 4.0998 1.9485
16 1 7.8619 4.1011 3.4325
17 1 8.5806 5.2543 1.4240
18 1 6.3948 4.2074 1.5047
19 7 2.0183 -0.6908 -1.1961
20 6 2.1087 -0.0290 -2.3667
21 8 1.7861 1.1385 -2.4298
22 6 2.6105 -0.7396 -3.5973
23 6 2.6270 0.2218 -4.8243
24 16 2.1049 -1.2923 -5.7115
25 8 0.9693 -1.0470 -6.5298
26 8 3.2247 -2.0199 -6.1970
27 6 1.6131 -1.8599 -4.0422
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5140 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7491 -0.1598 2.1371
32 1 1.6075 -1.7208 1.2937
33 1 3.4877 -2.8066 1.8849
34 1 5.0690 -1.9932 1.9648
35 1 3.7928 -1.5746 3.1329
36 1 3.6760 1.2459 0.8722
37 1 3.9932 0.7121 2.5403
38 1 6.0110 2.2957 1.7133
39 1 10.3961 3.2183 1.1748
40 1 2.2766 -1.6244 -1.1456
41 1 3.6014 -1.1564 -3.4177
42 1 3.6177 0.5847 -5.0981
43 1 1.8717 1.0069 -4.7910
44 1 0.5717 -1.6620 -3.7883
45 1 1.9335 -2.8730 -3.7990
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569119613.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:49:59
Heat of formation + Delta-G solvation = -135.603464 kcal
Electronic energy + Delta-G solvation = -29198.889383 eV
Core-core repulsion = 24957.940158 eV
Total energy + Delta-G solvation = -4240.949225 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.13641 -40.43769 -38.44316 -38.23714 -37.10679 -36.30614 -36.03616 -35.56139
-33.75650 -31.96795 -29.74054 -28.37853 -27.94658 -26.49295 -25.38376 -23.51879
-21.80714 -21.21606 -21.07791 -20.15765 -19.72142 -18.78405 -17.85352 -17.68702
-17.48987 -17.13269 -16.80794 -16.65911 -16.51427 -16.05276 -15.73048 -15.54262
-15.11282 -14.98617 -14.77012 -14.67630 -14.34623 -14.28621 -14.09748 -13.60657
-13.37560 -13.27022 -13.20155 -13.17198 -13.12313 -12.89042 -12.82067 -12.79104
-12.63260 -12.47600 -12.37847 -12.01344 -11.73516 -11.64178 -11.46779 -11.45356
-10.76214 -10.35882 -10.23789 -9.97922 -9.21184 -8.42691 -6.02544 -0.97963
1.26921 1.27785 1.31784 1.40805 1.58742 1.95255 2.15156 2.20282
2.51888 2.63462 2.95639 3.02541 3.13546 3.13821 3.22088 3.79139
3.85076 4.04960 4.12282 4.19598 4.22698 4.33238 4.33940 4.48083
4.58014 4.59254 4.67733 4.72291 4.74577 4.80890 4.83764 4.87245
5.09663 5.25607 5.34261 5.51349 5.59405 5.89036 6.00303 6.20228
6.58591 6.61840 6.87969 7.28442 7.39395 7.96179 8.74839
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.010403 B = 0.003024 C = 0.002643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2690.878127 B = 9257.491045 C =10592.118200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.141 3.859
3 H 0.060 0.940
4 C 0.049 3.951
5 N -0.532 5.532
6 C 0.027 3.973
7 C 0.053 3.947
8 C 0.453 3.547
9 O -0.599 6.599
10 N -0.596 5.596
11 C -0.324 4.324
12 H 0.058 0.942
13 C -0.014 4.014
14 N -0.934 5.934
15 Si 0.960 3.040
16 H -0.255 1.255
17 H -0.276 1.276
18 H -0.237 1.237
19 N -0.693 5.693
20 C 0.533 3.467
21 O -0.576 6.576
22 C -0.179 4.179
23 C -0.540 4.540
24 S 2.401 3.599
25 O -0.971 6.971
26 O -0.956 6.956
27 C -0.521 4.521
28 H 0.078 0.922
29 H 0.079 0.921
30 H 0.046 0.954
31 H 0.069 0.931
32 H 0.109 0.891
33 H 0.089 0.911
34 H 0.050 0.950
35 H 0.030 0.970
36 H 0.100 0.900
37 H 0.078 0.922
38 H 0.386 0.614
39 H 0.278 0.722
40 H 0.415 0.585
41 H 0.148 0.852
42 H 0.153 0.847
43 H 0.155 0.845
44 H 0.170 0.830
45 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.951 -6.726 -1.962 25.916
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.036 3.964
3 H 0.078 0.922
4 C -0.079 4.079
5 N -0.256 5.256
6 C -0.121 4.121
7 C -0.078 4.078
8 C 0.241 3.759
9 O -0.483 6.483
10 N -0.238 5.238
11 C -0.453 4.453
12 H 0.076 0.924
13 C -0.212 4.212
14 N -0.575 5.575
15 Si 0.780 3.220
16 H -0.179 1.179
17 H -0.201 1.201
18 H -0.161 1.161
19 N -0.343 5.343
20 C 0.317 3.683
21 O -0.456 6.456
22 C -0.203 4.203
23 C -0.670 4.670
24 S 2.588 3.412
25 O -0.968 6.968
26 O -0.953 6.953
27 C -0.652 4.652
28 H 0.097 0.903
29 H 0.098 0.902
30 H 0.065 0.935
31 H 0.087 0.913
32 H 0.128 0.872
33 H 0.108 0.892
34 H 0.069 0.931
35 H 0.049 0.951
36 H 0.118 0.882
37 H 0.096 0.904
38 H 0.221 0.779
39 H 0.088 0.912
40 H 0.252 0.748
41 H 0.165 0.835
42 H 0.171 0.829
43 H 0.173 0.827
44 H 0.188 0.812
45 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges -24.535 -7.065 -3.848 25.820
hybrid contribution 0.822 1.373 2.039 2.592
sum -23.713 -5.691 -1.809 24.454
Atomic orbital electron populations
1.22064 0.93008 1.03440 1.02634 1.21065 0.94789 0.96398 0.84121
0.92172 1.22582 0.86015 1.02976 0.96327 1.61468 1.05807 1.04420
1.53925 1.22445 1.01637 0.94882 0.93130 1.21838 0.90437 0.94049
1.01492 1.20844 0.89458 0.83569 0.82061 1.90503 1.76610 1.31389
1.49751 1.42095 1.07629 1.13168 1.60913 1.18986 0.83347 0.99984
1.43026 0.92362 1.26041 0.95463 1.02359 0.97366 1.69799 1.05937
1.32721 1.49002 0.85433 0.79768 0.77162 0.79611 1.17936 1.20073
1.16101 1.45730 1.65102 1.15740 1.07740 1.19982 0.77126 0.86344
0.84807 1.90690 1.51374 1.17741 1.85787 1.23645 1.04106 0.95978
0.96563 1.30875 1.14586 1.15717 1.05834 1.09567 0.74746 0.79274
0.77630 1.93539 1.51188 1.84160 1.67913 1.93641 1.52343 1.69832
1.79447 1.31034 1.07582 1.06342 1.20273 0.90301 0.90204 0.93486
0.91286 0.87246 0.89238 0.93121 0.95128 0.88154 0.90434 0.77872
0.91203 0.74822 0.83465 0.82876 0.82730 0.81221 0.79646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.89 9.46 71.98 0.68 -1.21 16
2 C 0.14 2.41 2.55 44.99 0.11 2.53 16
3 H 0.06 1.38 6.41 -2.39 -0.02 1.36 16
4 C 0.05 0.72 4.54 86.31 0.39 1.11 16
5 N -0.53 -12.95 4.16 -927.03 -3.86 -16.81 16
6 C 0.03 0.66 9.17 127.69 1.17 1.83 16
7 C 0.05 1.56 5.28 85.56 0.45 2.01 16
8 C 0.45 19.80 7.52 87.66 0.66 20.45 16
9 O -0.60 -31.28 13.88 -3.07 -0.04 -31.32 16
10 N -0.60 -28.01 5.09 -306.98 -1.56 -29.58 16
11 C -0.32 -18.87 10.16 84.04 0.85 -18.01 16
12 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16
13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16
14 N -0.93 -56.32 13.96 21.66 0.30 -56.01 16
15 Si 0.96 39.29 27.74 68.60 1.90 41.20 16
16 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16
17 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16
18 H -0.24 -8.41 6.52 99.48 0.65 -7.76 16
19 N -0.69 -12.28 4.83 -442.53 -2.14 -14.41 16
20 C 0.53 11.65 7.14 87.66 0.63 12.27 16
21 O -0.58 -17.03 15.39 -3.06 -0.05 -17.08 16
22 C -0.18 -2.79 3.22 -9.34 -0.03 -2.82 16
23 C -0.54 -8.63 8.20 72.98 0.60 -8.03 16
24 S 2.40 34.72 6.80 -56.49 -0.38 34.34 16
25 O -0.97 -20.99 18.18 -127.71 -2.32 -23.31 16
26 O -0.96 -20.92 18.18 -127.71 -2.32 -23.24 16
27 C -0.52 -4.03 8.54 73.19 0.62 -3.40 16
28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16
30 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16
31 H 0.07 0.84 8.01 -2.38 -0.02 0.82 16
32 H 0.11 1.07 7.81 -2.39 -0.02 1.05 16
33 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16
34 H 0.05 1.76 5.92 -2.39 -0.01 1.75 16
35 H 0.03 0.66 8.13 -2.39 -0.02 0.64 16
36 H 0.10 2.75 6.66 -2.39 -0.02 2.73 16
37 H 0.08 1.88 8.11 -2.38 -0.02 1.86 16
38 H 0.39 15.37 5.76 -92.71 -0.53 14.83 16
39 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16
40 H 0.42 5.72 8.58 -92.71 -0.80 4.92 16
41 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16
42 H 0.15 2.27 8.14 -2.38 -0.02 2.25 16
43 H 0.15 2.64 7.40 -2.39 -0.02 2.62 16
44 H 0.17 0.80 8.10 -2.38 -0.02 0.78 16
45 H 0.19 0.31 8.14 -2.38 -0.02 0.29 16
Total: -1.00 -92.52 383.58 -4.21 -96.74
By element:
Atomic # 1 Polarization: 33.42 SS G_CDS: -0.35 Total: 33.07 kcal
Atomic # 6 Polarization: -0.18 SS G_CDS: 6.61 Total: 6.43 kcal
Atomic # 7 Polarization: -109.56 SS G_CDS: -7.25 Total: -116.81 kcal
Atomic # 8 Polarization: -90.22 SS G_CDS: -4.73 Total: -94.96 kcal
Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal
Atomic # 16 Polarization: 34.72 SS G_CDS: -0.38 Total: 34.34 kcal
Total: -92.52 -4.21 -96.74 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569119613.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal
(2) G-P(sol) polarization free energy of solvation -92.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.603 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds