Wall clock time and date at job start Wed Apr 1 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.30365 * 2 1 4 4 C 1.54393 * 110.34421 * 122.28632 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.74101 * 4 2 1 6 6 C 1.34777 * 127.83866 * 140.41856 * 5 4 2 7 7 O 1.21589 * 119.99599 * 179.97438 * 6 5 4 8 8 C 1.47506 * 120.00063 * 359.97438 * 6 5 4 9 9 C 1.36826 * 126.94180 * 179.97438 * 8 6 5 10 10 C 1.41262 * 103.84422 * 179.97438 * 9 8 6 11 11 C 1.50701 * 126.70418 * 179.97438 * 10 9 8 12 12 F 1.39901 * 109.47402 * 90.00390 * 11 10 9 13 13 F 1.39905 * 109.47183 * 209.99962 * 11 10 9 14 14 F 1.39897 * 109.47128 * 330.00068 * 11 10 9 15 15 N 1.30132 * 106.59203 * 0.02562 * 10 9 8 16 16 O 1.20884 * 111.98105 * 359.69444 * 15 10 9 17 17 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 18 18 C 1.54283 * 110.34759 * 237.82267 * 2 1 3 19 19 H 1.08997 * 110.34370 * 122.15005 * 18 2 1 20 20 C 1.53004 * 110.34155 * 0.02562 * 18 2 1 21 21 N 1.46499 * 109.47198 * 176.47418 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47173 * 60.00435 * 26 24 22 28 28 H 1.48497 * 109.47172 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47132 * 300.00314 * 26 24 22 30 30 H 1.08998 * 109.46692 * 182.17389 * 1 2 3 31 31 H 1.08996 * 109.47452 * 302.18042 * 1 2 3 32 32 H 1.09000 * 109.46682 * 62.17536 * 1 2 3 33 33 H 1.09004 * 110.40591 * 261.52516 * 4 2 1 34 34 H 1.09000 * 110.40490 * 23.83061 * 4 2 1 35 35 H 1.07992 * 128.07696 * 0.02562 * 9 8 6 36 36 H 1.08998 * 110.38541 * 280.73226 * 17 5 4 37 37 H 1.09004 * 110.50344 * 158.25046 * 17 5 4 38 38 H 1.09009 * 109.46730 * 56.47206 * 20 18 2 39 39 H 1.08998 * 109.46846 * 296.47750 * 20 18 2 40 40 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 41 41 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2238 5 7 3.2665 -1.4823 0.7213 6 6 4.4425 -1.6676 1.3532 7 8 5.3388 -2.2774 0.8026 8 6 4.6420 -1.1308 2.7125 9 6 5.7695 -1.2354 3.4806 10 6 5.4305 -0.5573 4.6726 11 6 6.3111 -0.3634 5.8801 12 9 7.0377 0.8241 5.7417 13 9 5.5170 -0.2927 7.0298 14 9 7.1958 -1.4414 5.9900 15 7 4.2090 -0.1337 4.5246 16 8 3.7535 -0.4340 3.4459 17 6 2.8819 -1.9415 -0.6355 18 6 2.0665 -0.7703 -1.2244 19 1 2.7081 -0.1265 -1.8258 20 6 0.9063 -1.3010 -2.0690 21 7 1.4348 -1.9554 -3.2685 22 6 0.5765 -2.5052 -4.1830 23 1 -0.4898 -2.4603 -4.0177 24 6 1.0771 -3.1201 -5.3224 25 7 2.3767 -3.1750 -5.5235 26 14 -0.0937 -3.8707 -6.5694 27 1 -0.9964 -2.8167 -7.0979 28 1 0.6857 -4.4615 -7.6869 29 1 -0.9010 -4.9313 -5.9146 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8697 32 1 -0.3633 0.4797 -0.9089 33 1 2.3401 -0.0814 2.0206 34 1 1.3227 -1.4861 1.5792 35 1 6.7013 -1.7219 3.2330 36 1 2.2668 -2.8392 -0.5723 37 1 3.7689 -2.1293 -1.2407 38 1 0.2611 -0.4725 -2.3614 39 1 0.3317 -2.0206 -1.4858 40 1 2.3926 -1.9953 -3.4170 41 1 2.7264 -3.6051 -6.3195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569840785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:49 Heat of formation + Delta-G solvation = -94.844077 kcal Electronic energy + Delta-G solvation = -30306.026034 eV Core-core repulsion = 25389.543577 eV Total energy + Delta-G solvation = -4916.482457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.76675 -48.29136 -48.25599 -45.91454 -40.30990 -38.34555 -35.36968 -34.74064 -33.26398 -32.61465 -31.23725 -29.20962 -27.84530 -26.99805 -25.61039 -24.35091 -23.75879 -22.83570 -22.08904 -21.00884 -19.30072 -19.06480 -19.01423 -18.59819 -18.39333 -17.62585 -17.00922 -16.64725 -16.03402 -15.92605 -15.24629 -15.11126 -15.06198 -14.69521 -14.66186 -14.47079 -14.38455 -14.34350 -14.01509 -13.85628 -13.56657 -13.12927 -13.06305 -12.62964 -12.52250 -12.24486 -12.09383 -12.04025 -11.80626 -11.56372 -11.01726 -10.87904 -10.65162 -10.54419 -10.53412 -10.46264 -10.28085 -10.00174 -9.71600 -8.99910 -8.88666 -6.96038 -5.79098 -3.08618 0.13422 0.91219 1.61655 1.93422 2.59310 2.60731 2.78041 3.14238 3.42305 3.46876 3.48111 3.68712 3.88677 4.02874 4.15901 4.40045 4.46047 4.54652 4.70569 4.84099 5.04123 5.22043 5.32688 5.37573 5.50755 5.55327 5.65451 5.70411 5.81098 5.96480 6.01920 6.04043 6.22220 6.30593 6.39930 6.67667 6.76893 7.01581 7.18876 7.62314 7.66495 8.39330 9.50504 10.07128 10.40947 11.43440 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.002065 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.929711 B =13554.079035 C =14313.627376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.096 3.904 5 N -0.607 5.607 6 C 0.618 3.382 7 O -0.503 6.503 8 C -0.055 4.055 9 C -0.115 4.115 10 C -0.086 4.086 11 C 0.561 3.439 12 F -0.162 7.162 13 F -0.162 7.162 14 F -0.159 7.159 15 N -0.292 5.292 16 O 0.153 5.847 17 C 0.117 3.883 18 C -0.106 4.106 19 H 0.084 0.916 20 C 0.162 3.838 21 N -0.734 5.734 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.200 0.800 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.383 0.617 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 7.869 23.749 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.027 4.027 5 N -0.339 5.339 6 C 0.402 3.598 7 O -0.378 6.378 8 C -0.121 4.121 9 C -0.138 4.138 10 C -0.244 4.244 11 C 0.506 3.494 12 F -0.143 7.143 13 F -0.144 7.144 14 F -0.140 7.140 15 N 0.016 4.984 16 O 0.069 5.931 17 C -0.003 4.003 18 C -0.126 4.126 19 H 0.102 0.898 20 C 0.034 3.966 21 N -0.379 5.379 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.217 0.783 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.217 0.783 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.353 8.152 24.285 25.984 hybrid contribution 0.460 -0.739 -0.838 1.208 sum 4.813 7.413 23.447 25.057 Atomic orbital electron populations 1.21908 0.93559 1.02826 1.02152 1.22056 0.96873 0.99240 0.93486 0.90038 1.22830 0.86493 0.95948 0.97392 1.48976 1.11956 1.54176 1.18770 1.15905 0.82211 0.80492 0.81154 1.90949 1.41364 1.41323 1.64153 1.24467 0.90242 1.00899 0.96447 1.22690 1.01088 1.00062 0.89931 1.23409 0.94846 1.07592 0.98572 1.16569 0.77796 0.74655 0.80385 1.93284 1.78383 1.46981 1.95691 1.93272 1.73640 1.95979 1.51471 1.93269 1.69404 1.55194 1.96147 1.73811 1.10034 1.14608 0.99905 1.85125 1.37502 1.51928 1.18588 1.22672 1.00192 0.97602 0.79861 1.22375 0.98297 0.96124 0.95784 0.89754 1.20858 0.92764 0.95027 0.87927 1.42410 1.06594 1.67802 1.21081 1.19144 0.89764 1.29140 0.99293 0.91217 1.24749 0.95826 1.01618 0.98661 1.69647 1.10468 1.49158 1.28740 0.86277 0.79799 0.79039 0.81098 1.21279 1.21704 1.21264 0.91600 0.92900 0.91186 0.89815 0.89765 0.78319 0.89466 0.89014 0.95387 0.95757 0.78298 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.94 37.16 0.29 -1.11 16 2 C -0.10 -1.00 3.66 -89.22 -0.33 -1.33 16 3 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 4 C 0.10 0.91 6.28 -2.41 -0.02 0.90 16 5 N -0.61 -7.41 3.32 -170.40 -0.57 -7.98 16 6 C 0.62 7.95 7.91 -12.48 -0.10 7.85 16 7 O -0.50 -8.08 17.18 5.29 0.09 -7.99 16 8 C -0.06 -0.57 7.11 -36.32 -0.26 -0.83 16 9 C -0.12 -1.05 10.65 -38.94 -0.41 -1.47 16 10 C -0.09 -0.82 6.63 -82.16 -0.54 -1.36 16 11 C 0.56 4.87 3.56 36.01 0.13 4.99 16 12 F -0.16 -1.44 17.30 2.25 0.04 -1.40 16 13 F -0.16 -1.51 17.27 2.25 0.04 -1.47 16 14 F -0.16 -1.30 17.08 2.25 0.04 -1.26 16 15 N -0.29 -3.00 12.00 33.52 0.40 -2.60 16 16 O 0.15 1.49 8.51 15.55 0.13 1.62 16 17 C 0.12 1.69 6.35 -2.32 -0.01 1.68 16 18 C -0.11 -1.48 3.11 -89.22 -0.28 -1.76 16 19 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.16 2.84 4.39 -4.04 -0.02 2.83 16 21 N -0.73 -17.37 5.46 -59.90 -0.33 -17.69 16 22 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 30 H 0.07 0.66 6.85 -51.93 -0.36 0.31 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.73 6.71 -51.93 -0.35 0.39 16 33 H 0.08 0.68 5.61 -51.93 -0.29 0.39 16 34 H 0.08 0.72 7.83 -51.93 -0.41 0.32 16 35 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.09 1.32 7.78 -51.93 -0.40 0.91 16 37 H 0.09 1.51 7.89 -51.93 -0.41 1.10 16 38 H 0.03 0.50 6.58 -51.92 -0.34 0.16 16 39 H 0.02 0.43 6.89 -51.93 -0.36 0.07 16 40 H 0.38 9.64 7.56 -40.82 -0.31 9.33 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.67 357.43 -5.31 -35.99 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.46 Total: 4.11 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.79 Total: 3.30 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.23 Total: -55.18 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.22 Total: -6.37 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.12 Total: -4.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.67 -5.31 -35.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569840785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.854 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds