Wall clock time and date at job start Wed Apr 1 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.53036 * 113.15414 * 275.37361 * 9 8 6 11 11 S 1.81426 * 89.89138 * 211.85192 * 10 9 8 12 12 O 1.42100 * 112.75335 * 280.47287 * 11 10 9 13 13 O 1.42102 * 112.75469 * 136.72725 * 11 10 9 14 14 C 1.53042 * 113.15435 * 174.99623 * 9 8 6 15 15 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 16 16 C 1.46901 * 111.00002 * 274.99677 * 15 2 1 17 17 C 1.50699 * 109.47447 * 179.97438 * 16 15 2 18 18 O 1.21296 * 119.99473 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00376 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00436 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99808 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00419 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99887 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00153 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46939 * 89.99632 * 24 22 20 26 26 H 1.48502 * 109.47288 * 209.99639 * 24 22 20 27 27 H 1.48499 * 109.47231 * 329.99808 * 24 22 20 28 28 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 30 30 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 31 31 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 32 32 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 34 34 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 35 35 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 36 36 H 1.09003 * 112.49544 * 45.21408 * 9 8 6 37 37 H 1.09003 * 113.14543 * 327.10868 * 10 9 8 38 38 H 1.08997 * 113.15215 * 96.59323 * 10 9 8 39 39 H 1.09006 * 113.14842 * 263.40594 * 14 9 8 40 40 H 1.09006 * 113.14575 * 32.88971 * 14 9 8 41 41 H 1.00897 * 111.00541 * 151.04270 * 15 2 1 42 42 H 1.09001 * 109.47268 * 300.00240 * 16 15 2 43 43 H 1.08998 * 109.47179 * 59.99719 * 16 15 2 44 44 H 0.97005 * 120.00056 * 0.02562 * 19 17 16 45 45 H 0.97002 * 120.00086 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 6.1537 -3.7682 -3.2635 11 16 7.6154 -3.8830 -4.3321 12 8 7.2999 -3.7488 -5.7111 13 8 8.5712 -4.8210 -3.8569 14 6 7.7134 -2.2865 -3.4761 15 7 2.0196 -0.6926 1.1993 16 6 2.0825 0.2224 2.3468 17 6 2.5874 -0.5220 3.5559 18 8 2.8677 -1.6990 3.4700 19 7 2.7284 0.1202 4.7324 20 6 3.1882 -0.5570 5.8322 21 1 3.4370 -1.6051 5.7560 22 6 3.3330 0.1050 7.0453 23 7 3.0298 1.3803 7.1383 24 14 3.9589 -0.8178 8.5440 25 1 5.4399 -0.7248 8.5998 26 1 3.3786 -0.2183 9.7725 27 1 3.5557 -2.2440 8.4512 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.7515 -0.1582 -2.1370 32 1 1.6053 -1.7197 -1.2952 33 1 3.9824 -0.4622 -0.4320 34 1 6.1067 -0.5264 -2.0889 35 1 5.9679 -2.0904 -1.2506 36 1 5.7145 -1.8769 -4.2999 37 1 6.3368 -4.1191 -2.2479 38 1 5.2635 -4.2154 -3.7057 39 1 8.1295 -1.4926 -4.0964 40 1 8.1971 -2.3518 -2.5014 41 1 2.9172 -1.1206 1.0286 42 1 2.7589 1.0461 2.1182 43 1 1.0872 0.6162 2.5525 44 1 2.5045 1.0615 4.8010 45 1 3.1312 1.8425 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690593595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:54 Heat of formation + Delta-G solvation = -120.946048 kcal Electronic energy + Delta-G solvation = -27727.091581 eV Core-core repulsion = 23486.777949 eV Total energy + Delta-G solvation = -4240.313632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.24016 -38.58385 -37.83041 -37.45819 -36.78730 -36.36664 -34.22246 -33.81006 -31.44274 -31.04652 -29.73129 -27.08417 -26.75574 -25.91257 -24.01473 -21.84539 -20.77723 -20.41567 -19.39141 -19.22109 -18.03357 -17.66718 -17.00059 -16.77720 -16.50477 -16.36535 -16.11217 -15.81946 -15.47167 -15.05859 -14.86951 -14.52352 -13.98926 -13.94089 -13.59089 -13.51585 -13.38683 -13.11837 -12.87195 -12.62782 -12.61782 -12.59461 -12.42562 -11.97400 -11.82303 -11.79340 -11.72324 -11.60546 -11.48675 -11.13900 -11.02423 -10.93188 -10.71201 -10.44751 -10.28415 -10.08650 -9.58075 -9.32405 -8.56171 -8.21751 -8.03914 -6.48742 -3.89817 -0.24513 1.59780 2.39105 2.85478 3.12574 3.22129 3.27867 3.28431 3.59212 3.72130 3.81644 3.96987 4.15215 4.21424 4.42862 4.54320 4.62007 4.70960 4.82113 4.89886 4.96756 5.09437 5.12362 5.16200 5.17845 5.21479 5.39120 5.44924 5.60356 5.61237 5.67292 5.69911 5.87792 5.90979 6.09013 6.17180 6.28506 7.06074 7.18028 7.48211 7.48661 7.94559 7.98658 8.53154 9.10621 9.46211 9.97153 10.68777 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.002010 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.537795 B =13929.363101 C =15901.662933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.731 5.731 6 C 0.515 3.485 7 O -0.539 6.539 8 C -0.122 4.122 9 C -0.051 4.051 10 C -0.595 4.595 11 S 2.408 3.592 12 O -0.915 6.915 13 O -0.928 6.928 14 C -0.602 4.602 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.438 3.562 18 O -0.583 6.583 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.347 0.653 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -0.079 -20.783 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.301 3.699 7 O -0.416 6.416 8 C -0.164 4.164 9 C -0.072 4.072 10 C -0.724 4.724 11 S 2.590 3.410 12 O -0.912 6.912 13 O -0.925 6.925 14 C -0.730 4.730 15 N -0.299 5.299 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.468 6.468 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.037 -2.055 -21.991 22.654 hybrid contribution 0.499 1.788 1.976 2.711 sum 5.536 -0.268 -20.015 20.768 Atomic orbital electron populations 1.21738 0.93352 1.02997 1.01589 1.21813 0.97198 0.95894 0.88998 0.93348 1.21619 0.79233 1.02087 0.97653 1.46080 1.08259 1.60347 1.23762 1.20543 0.89928 0.77274 0.82107 1.90708 1.70399 1.47187 1.33276 1.21532 0.92336 1.03453 0.99036 1.21198 0.91847 0.92905 1.01271 1.31041 1.21747 1.02840 1.16806 1.08428 0.78367 0.78124 0.76101 1.93723 1.83590 1.85882 1.28016 1.93651 1.57768 1.58518 1.82540 1.31078 1.02634 1.24150 1.15142 1.60113 1.34773 1.32314 1.02715 1.21758 1.01539 0.93753 0.91278 1.19780 0.85178 0.88218 0.84465 1.90532 1.55413 1.16078 1.84747 1.41868 1.57564 1.12425 1.07982 1.19698 1.40055 0.96445 0.86793 0.87903 1.25274 0.97569 0.95796 0.99273 1.69608 1.48429 1.08871 1.27288 0.85852 0.78762 0.79545 0.80105 1.20393 1.20883 1.19372 0.91498 0.91946 0.92477 0.90794 0.90272 0.76472 0.87746 0.87622 0.85918 0.83748 0.85140 0.85531 0.83593 0.83203 0.93865 0.89384 0.77461 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 2 C 0.07 0.76 2.81 -67.72 -0.19 0.57 16 3 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 4 C 0.12 1.20 5.31 -4.04 -0.02 1.18 16 5 N -0.73 -6.87 4.99 -60.29 -0.30 -7.17 16 6 C 0.52 5.15 7.83 -10.99 -0.09 5.06 16 7 O -0.54 -7.20 15.78 5.55 0.09 -7.11 16 8 C -0.12 -0.79 5.48 -27.88 -0.15 -0.94 16 9 C -0.05 -0.32 2.80 -90.58 -0.25 -0.58 16 10 C -0.60 -3.54 7.48 37.18 0.28 -3.26 16 11 S 2.41 14.51 7.55 -107.50 -0.81 13.70 16 12 O -0.91 -8.77 18.18 -57.30 -1.04 -9.81 16 13 O -0.93 -8.86 18.18 -57.30 -1.04 -9.90 16 14 C -0.60 -2.38 7.49 37.18 0.28 -2.10 16 15 N -0.66 -9.55 5.92 -107.99 -0.64 -10.19 16 16 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 17 C 0.44 9.77 7.82 -10.99 -0.09 9.68 16 18 O -0.58 -15.13 15.78 5.54 0.09 -15.04 16 19 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 20 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 24 Si 0.93 20.50 29.55 -169.99 -5.02 15.47 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 3.25 7.37 -40.82 -0.30 2.95 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.56 7.89 -51.93 -0.41 0.15 16 36 H 0.12 0.86 7.71 -51.93 -0.40 0.46 16 37 H 0.14 0.69 7.94 -51.93 -0.41 0.28 16 38 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.15 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.35 5.04 6.41 -39.29 -0.25 4.79 16 42 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 43 H 0.09 1.32 7.44 -51.93 -0.39 0.94 16 44 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 45 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -38.07 389.72 -8.88 -46.95 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.59 Total: 12.41 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.15 Total: 1.56 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.27 Total: -54.11 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.91 Total: -41.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 14.51 SS G_CDS: -0.81 Total: 13.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.07 -8.88 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690593595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.993 kcal (2) G-P(sol) polarization free energy of solvation -38.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds